MD07G1178500.v1.1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0001116
Physical Location & Seq
Reverse (-)
25825952 .. 25826203
252 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1178500.v1.1.491

Sequence Viewer

Length: 252 bp
ATGTTGTGGGCAGTACGGGTAGTGCTGGCCGTGGTGCTTCAGGACCGCATAGGTGGGCTGCAGGTTAAGTACGGTGACGGTTGGGTGGATGTGAAACCTGTTCCCGGTGCCCTCGTCATCAACATTGGGGATTTTCTTCAGATTGTGTCCAATGGTGAATACCGAAGTGTAGATCATCGTGTGTTGGCGAACTCATCCCGTGAACCCCGTGTGTCAATCGCTGTGTTTTTCAATGTGAGTAGAAAGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

84

Amino Acids

9.15

Weight (kDa)

9.81

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 8 - 78 2.1e-21 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 107
AciI CCGC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 2 cut(s) 23, 122
AfaI GTAC 2 cut(s) 15, 71
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 232
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 86, 167
AvaII GGWCC 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 14
BcnI CCSGG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 59
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 94, 194
BseLI CCNNNNNNNGG 1 cut(s) 104
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 1 cut(s) 45
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 104
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 74, 80
BstC8I GCNNGC 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 2 cut(s) 94, 194
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 59
BstSLI GKGCMC 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 94, 194
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 2 cut(s) 14, 70
CviJI RGCY 2 cut(s) 29, 58
CviKI_1 RGCY 2 cut(s) 29, 58
CviQI GTAC 2 cut(s) 14, 70
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 23, 122
FaiI YATR 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 2 cut(s) 101, 181
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 105
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 86, 167
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 74, 80
HpyCH4V TGCA 1 cut(s) 61
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 11, 26, 47, 111, 118
Lsp1109I GCAGC 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 112
MnlI CCTC 1 cut(s) 122
MseI TTAA 1 cut(s) 66
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 105
NciI CCSGG 1 cut(s) 105
NdeII GATC 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 43
PstI CTGCAG 1 cut(s) 63
RsaI GTAC 2 cut(s) 15, 71
RsaNI GTAC 2 cut(s) 14, 70
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 112
SetI ASST 3 cut(s) 55, 66, 100
SfcI CTRYAG 1 cut(s) 59
SinI GGWCC 1 cut(s) 43
SsiI CCGC 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 74, 80
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.