Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001116

Physical Location & Seq

Genomic Coordinates Reverse (-)

1428519 .. 1429387

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1019700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCGGCAGCGGCGGTGGAGAACACCTTGATCGGCGAACTGGATTACGATAGAGCTGAAGAAATCAATCAATTGTGCGTAACATTGCAAAGTCGAATTATGTCCAACGGTGAGTACAAAGCTGCTCTTCATCGGGTGTTGGCAAACCCATACCGCGAACCTCGGGTGTCAGTTGCAGTGTTTTTTAGTCCAGGCACTCGAGAGGACACATATGGCCCATTGCCGGAGCTGGTCTCGCCGGTGAAACTGGCACTTATACCGTCAGTTTACTCTTGCAGAGTTCATGCAAAGGTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

100

Amino Acids

10.95

Weight (kDa)

6.72

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001116)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33740
malus_domestica	MD07G1178500.v1.1 MD16G1019700.v1.1 MD16G1019800.v1.1 MD16G1019900.v1.1 MD16G1020000.v1.1 MD16G1020100.v1.1
prunus_persica	Prupe.1G332200_v2.0.a1
pyrus_communis	pycom16g01780 pycom16g01790 pycom16g01800
rosa_chinensis	RchiOBHm_Chr1g0327761 RchiOBHm_Chr1g0333401 RchiOBHm_Chr4g0443221 RchiOBHm_Chr4g0443231 RchiOBHm_Chr4g0443251 RchiOBHm_Chr4g0443261
rosa_laevigata	RLG00000003074 RLG00000005942 RLG00000005944 RLG00000005945 RLG00000005946 RLG00000008366 RLG00000009730 RLG00000020853
rosa_multiflora	Rmu_co8298297.1_g000001 Rmu_sc0000826.1_g000014 Rmu_sc0000928.1_g000026 Rmu_sc0007238.1_g000006 Rmu_sc0007968.1_g000001 Rmu_sc0018919.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127360 Rroxscaffold_3G00246070 Rroxscaffold_5G00383820 Rroxscaffold_5G00383830 Rroxscaffold_5G00383840 Rroxscaffold_5G00383850 Rroxscaffold_6G00425780
rosa_rugosa	Rorug01G0050200 Rorug04G0344800 Rorug04G0344900 Rorug04G0344900 Rorug04G0345100
rosa_samantha	Rh4AG399600 Rh4AG399800 Rh4AG400000 Rh4BG411300 Rh4BG411600 Rh4BG411700 Rh4BG411800 Rh4CG426900 Rh4CG427000 Rh4DG406400 Rh4DG406500 Rh4DG406700 Rh4DG406900
rosa_wichuraiana	Rw1G006780 Rw4G034470 Rw4G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	4 cut(s)	5, 11, 14, 154
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	3 cut(s)	56, 122, 229
AluI	AGCT	3 cut(s)	56, 122, 229
Alw26I	GTCTC	1 cut(s)	238
Ama87I	CYCGRG	2 cut(s)	162, 198
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	8, 122
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	122, 253
AvaI	CYCGRG	2 cut(s)	162, 198
BbvI	GCAGC	2 cut(s)	20, 109
BciT130I	CCWGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	238
BisI	GCNGC	4 cut(s)	6, 9, 12, 123
BlsI	GCNGC	4 cut(s)	7, 10, 13, 124
Bme1390I	CCNGG	1 cut(s)	192
BmeT110I	CYCGRG	2 cut(s)	162, 198
BmgT120I	GGNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	45, 252
Bse3DI	GCAATG	2 cut(s)	83, 218
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	2 cut(s)	83, 218
BseNI	ACTGG	2 cut(s)	45, 252
BseXI	GCAGC	2 cut(s)	20, 109
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	216
BsiHKCI	CYCGRG	2 cut(s)	162, 198
BsiSI	CCGG	2 cut(s)	224, 239
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	2 cut(s)	162, 198
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	4 cut(s)	5, 11, 14, 154
BspANI	GGCC	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	83, 218
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	45, 252
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	110, 261
Bst6I	CTCTTC	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 235
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	20, 109
BsuRI	GGCC	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	4 cut(s)	56, 122, 216, 229
CviKI_1	RGCY	4 cut(s)	56, 122, 216, 229
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	2 cut(s)	162, 198
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	287
FaiI	YATR	6 cut(s)	101, 151, 211, 213, 257, 285
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	1 cut(s)	283
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	6, 9, 12, 123
Fsp4HI	GCNGC	4 cut(s)	6, 9, 12, 123
GluI	GCNGC	4 cut(s)	6, 9, 12, 123
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	2 cut(s)	224, 239
Hin1II	CATG	1 cut(s)	287
HpaII	CCGG	2 cut(s)	224, 239
HphI	GGTGA	2 cut(s)	122, 253
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	110, 261
HpyCH4V	TGCA	4 cut(s)	88, 176, 276, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 235
Hsp92II	CATG	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	26, 177, 204, 215, 233, 237, 252
Lsp1109I	GCAGC	2 cut(s)	20, 109
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	2 cut(s)	71, 119
MfeI	CAATTG	1 cut(s)	71
MluCI	AATT	2 cut(s)	71, 96
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	2 cut(s)	171, 196
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	224, 239
MspR9I	CCNGG	1 cut(s)	192
MunI	CAATTG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	192
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	11, 235
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	287
PaeR7I	CTCGAG	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	7, 10, 13, 124
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	132
SatI	GCNGC	4 cut(s)	6, 9, 12, 123
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	6 cut(s)	29, 58, 124, 163, 231, 294
Sfr274I	CTCGAG	1 cut(s)	198
SgrAI	CRCCGGYG	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	2 cut(s)	71, 96
SsiI	CCGC	4 cut(s)	5, 11, 14, 154
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	110, 261
TaqI	TCGA	2 cut(s)	94, 199
TasI	AATT	2 cut(s)	71, 96
TatI	WGTACW	1 cut(s)	114
TauI	GCSGC	2 cut(s)	8, 14
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	2 cut(s)	8, 122
TspDTI	ATGAA	2 cut(s)	119, 272
TspRI	CASTG	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.