Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001116

Physical Location & Seq

Genomic Coordinates Forward (+)

39164852 .. 39165175

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCCCAACCAATCCCCACCATCGACCTCTCCGACCTCCACTCCGATCTCTCGCTCCGCCATCGTCGACCAAGTTAGCGGTGCGTGCCGCAACTTCGATTTCTTCCGCATCACCAACCACGGCATTTCGTTGGTGGTTCTCGACCATACCATCGCTGCCGTCAAGGCCTCCCACGAGCAGCCGACGGCGGTCAAGGCGCGGTTCTACCGTAGAGAGATGGGCCGGGCGTATCGTATCTGTCCAACGTCGACCCGTACACCTCCAAAGCCGCCACCGGCGCGACATGCTTCAAGGAAGCCTCGGCCCTGTTCCGGCTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

107

Amino Acids

11.71

Weight (kDa)

10.85

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	16 - 78	2.8e-09	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001116)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33740
malus_domestica	MD07G1178500.v1.1 MD16G1019700.v1.1 MD16G1019800.v1.1 MD16G1019900.v1.1 MD16G1020000.v1.1 MD16G1020100.v1.1
prunus_persica	Prupe.1G332200_v2.0.a1
pyrus_communis	pycom16g01780 pycom16g01790 pycom16g01800
rosa_chinensis	RchiOBHm_Chr1g0327761 RchiOBHm_Chr1g0333401 RchiOBHm_Chr4g0443221 RchiOBHm_Chr4g0443231 RchiOBHm_Chr4g0443251 RchiOBHm_Chr4g0443261
rosa_laevigata	RLG00000003074 RLG00000005942 RLG00000005944 RLG00000005945 RLG00000005946 RLG00000008366 RLG00000009730 RLG00000020853
rosa_multiflora	Rmu_co8298297.1_g000001 Rmu_sc0000826.1_g000014 Rmu_sc0000928.1_g000026 Rmu_sc0007238.1_g000006 Rmu_sc0007968.1_g000001 Rmu_sc0018919.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127360 Rroxscaffold_3G00246070 Rroxscaffold_5G00383820 Rroxscaffold_5G00383830 Rroxscaffold_5G00383840 Rroxscaffold_5G00383850 Rroxscaffold_6G00425780
rosa_rugosa	Rorug01G0050200 Rorug04G0344800 Rorug04G0344900 Rorug04G0344900 Rorug04G0345100
rosa_samantha	Rh4AG399600 Rh4AG399800 Rh4AG400000 Rh4BG411300 Rh4BG411600 Rh4BG411700 Rh4BG411800 Rh4CG426900 Rh4CG427000 Rh4DG406400 Rh4DG406500 Rh4DG406700 Rh4DG406900
rosa_wichuraiana	Rw1G006780 Rw4G034470 Rw4G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	66, 248
AccII	CGCG	2 cut(s)	199, 280
AciI	CCGC	7 cut(s)	57, 78, 88, 106, 188, 199, 269
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	291
AoxI	GGCC	3 cut(s)	165, 220, 302
ApeKI	GCWGC	3 cut(s)	155, 178, 315
AspLEI	GCGC	2 cut(s)	199, 280
AspS9I	GGNCC	2 cut(s)	220, 303
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	103
BauI	CACGAG	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	142, 190, 302
BccI	CCATC	4 cut(s)	28, 68, 158, 211
BceAI	ACGGC	3 cut(s)	136, 143, 201
BcnI	CCSGG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	316
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	5 cut(s)	88, 156, 179, 269, 316
BlsI	GCNGC	5 cut(s)	89, 157, 180, 270, 317
Bme1390I	CCNGG	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	220, 303
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	117
BoxI	GACNNNNGTC	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	118, 299
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse118I	RCCGGY	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	118, 299
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseXI	GCAGC	3 cut(s)	142, 190, 302
Bsh1236I	CGCG	2 cut(s)	199, 280
BshFI	GGCC	3 cut(s)	167, 222, 304
BsiSI	CCGG	3 cut(s)	223, 275, 312
BslI	CCNNNNNNNGG	1 cut(s)	311
BsnI	GGCC	3 cut(s)	167, 222, 304
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	7 cut(s)	57, 78, 88, 106, 188, 199, 269
BspANI	GGCC	3 cut(s)	167, 222, 304
BspFNI	CGCG	2 cut(s)	199, 280
BspMAI	CTGCAG	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	118, 299
BssMI	GATC	1 cut(s)	45
BssSI	CACGAG	1 cut(s)	173
Bst2BI	CACGAG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	118
BstFNI	CGCG	2 cut(s)	199, 280
BstHHI	GCGC	2 cut(s)	199, 280
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 164, 194, 277, 284
BstNSI	RCATGY	1 cut(s)	287
BstPAI	GACNNNNGTC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	316
BstUI	CGCG	2 cut(s)	199, 280
BstV1I	GCAGC	3 cut(s)	142, 190, 302
BsuRI	GGCC	3 cut(s)	167, 222, 304
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	2 cut(s)	199, 280
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	220, 303
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	7 cut(s)	167, 181, 222, 268, 298, 304, 315
CviKI_1	RGCY	7 cut(s)	167, 181, 222, 268, 298, 304, 315
CviQI	GTAC	1 cut(s)	255
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	167
FaeI	CATG	1 cut(s)	287
FaiI	YATR	2 cut(s)	147, 285
FatI	CATG	1 cut(s)	283
FblI	GTMKAC	2 cut(s)	66, 248
Fnu4HI	GCNGC	5 cut(s)	88, 156, 179, 269, 316
Fsp4HI	GCNGC	5 cut(s)	88, 156, 179, 269, 316
GlaI	GCGC	2 cut(s)	198, 279
GluI	GCNGC	5 cut(s)	88, 156, 179, 269, 316
HaeIII	GGCC	3 cut(s)	167, 222, 304
HapII	CCGG	3 cut(s)	223, 275, 312
HhaI	GCGC	2 cut(s)	199, 280
Hin1II	CATG	1 cut(s)	287
Hin6I	GCGC	2 cut(s)	197, 278
HinP1I	GCGC	2 cut(s)	197, 278
HincII	GTYRAC	2 cut(s)	67, 249
HindII	GTYRAC	2 cut(s)	67, 249
HpaII	CCGG	3 cut(s)	223, 275, 312
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	3 cut(s)	67, 249, 257
Hpy188I	TCNGA	2 cut(s)	33, 45
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	3 cut(s)	67, 249, 257
Hpy99I	CGWCG	3 cut(s)	68, 187, 250
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 164, 194, 277, 284
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	287
HspAI	GCGC	2 cut(s)	197, 278
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	3 cut(s)	236, 288, 319
Lsp1109I	GCAGC	3 cut(s)	142, 190, 302
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	245
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	1 cut(s)	94
MmeI	TCCRAC	2 cut(s)	56, 266
MnlI	CCTC	5 cut(s)	37, 46, 178, 270, 309
MspI	CCGG	3 cut(s)	223, 275, 312
MspR9I	CCNGG	1 cut(s)	224
MvnI	CGCG	2 cut(s)	199, 280
MwoI	GCNNNNNNNGC	5 cut(s)	84, 164, 194, 277, 284
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	287
NmeAIII	GCCGAG	1 cut(s)	280
NspI	RCATGY	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	89, 157, 180, 270, 317
PshAI	GACNNNNGTC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	220, 303
PstI	CTGCAG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SalI	GTCGAC	2 cut(s)	65, 247
SatI	GCNGC	5 cut(s)	88, 156, 179, 269, 316
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	2 cut(s)	220, 303
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	4 cut(s)	29, 38, 248, 262
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	316
SgrAI	CRCCGGYG	1 cut(s)	274
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	7 cut(s)	57, 78, 88, 106, 188, 199, 269
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	5 cut(s)	23, 66, 96, 141, 248
TauI	GCSGC	2 cut(s)	90, 271
TseI	GCWGC	3 cut(s)	155, 178, 315
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	2 cut(s)	66, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.