Rw4G034470

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001116
Physical Location & Seq
Reverse (-)
61529648 .. 61530830
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G034470.1

Sequence Viewer

Length: 1104 bp
ATGGCGGCAAATGGTACCTTGATCGGCGAACAGGGTTATGATCGAGCCGAAGAAGTGAAGCAATTCGACGACTCCAAGCTCGGAGTCAAAGGCCTCGTCGACTCGGGTCTCTCCTCCATTCCCCGAATCTTCATCCACCCACCCGAAACCTTACAGCAATTGCAGCCCACGACCCGACCCGACGCCCAATCAATCCCCACCATAGACCTCTCCGACCTCCACCACTCCGATCGCCGCTCCGCCATCGTTGACCAAGTCGGCGGCGCCTGCCGCAACTTCGGTTTCTTCCAGATCACCAACCACGGCATACCGACGGTGGTTCTGGACCGTACGATCGCCGCCGTCAAGGCCTTCCACGAGCAGCCGACGGAGGTCAAGGCGCGGTTCTACCGTAGAGAGATGGGCCAGGGCGTGTCGTATCTCTCCAACGTTGACCTGTACACCTCCAAAGCCGCCAGCTGGCGCGACACCCTTCAGGTGAAGCTCGGCCCTGTTCCGGCGGCCGACGACGACGTTCCGGAGATATGTAGGGATGAAATTGTGGCGTGGAACAAGGAGATCCAACGGCTGGGAGAGGAGCTGCTGGGGCTGGTGAGTGAAGGGCTGGGATTGCCTGCGGAGAAGCTGAAGGAGATGACGTGTCTGGAAGGGAGGGTGATGGCGGCCCACTACTACCCGCCGTGCCCACAGCCTGATCTAACGGTTGGGCTTACGTCACACAGTGACCCTGGAGTGTTGACCTTAGTGCTTCAAGATCATATTGGTGGGTTGCAGGTTAAGCACGATGAGGATTGGGTGGATGTGAAACCTGTCCCCGGTGCTCTTGTCATCAACGTTGGTGATTTACTCCAGATCATTTCAAACGAGGAATACAAAAGCGTGGATCACCGGGTGTTGGCAAATCCAAGCCATGAGCCGCGTGTCTCGATCGCCGTGTTTTTGAACCCGAGCAATAGAGAGGGCGTGTTTGGTCCGTTGCCGGAGCTGGTCTCGCCGGAGAAGCCAGCTCTCTACAAAGAGTTCAAGTTTTCGGAATTCATGACGAGGTTCTTCACGAAAGGATTGGATGGCAAAACTCTGGTGAATTACTATAAGCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

367

Amino Acids

40.66

Weight (kDa)

5.34

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 65 - 162 2e-20 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 219 - 316 3.3e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 763
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 2 cut(s) 14, 263
AccB7I CCANNNNNTGG 1 cut(s) 568
AccBSI CCGCTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 99
AccII CGCG 3 cut(s) 382, 465, 919
AccIII TCCGGA 1 cut(s) 517
AclI AACGTT 2 cut(s) 429, 834
AclWI GGATC 2 cut(s) 553, 891
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 1 cut(s) 1034
AcuI CTGAAG 2 cut(s) 458, 647
AcyI GRCGYC 2 cut(s) 183, 264
AdeI CACNNNGTG 2 cut(s) 722, 892
AfaI GTAC 3 cut(s) 16, 331, 440
AfiI CCNNNNNNNGG 5 cut(s) 459, 496, 568, 815, 895
AflIII ACRYGT 1 cut(s) 638
AgsI TTSAA 4 cut(s) 752, 861, 943, 1024
AjiI CACGTC 1 cut(s) 639
AjnI CCWGG 2 cut(s) 405, 727
AluBI AGCT 8 cut(s) 79, 459, 484, 580, 625, 985, 1007, 1096
AluI AGCT 8 cut(s) 79, 459, 484, 580, 625, 985, 1007, 1096
Alw21I GWGCWC 1 cut(s) 823
Alw26I GTCTC 3 cut(s) 113, 928, 994
AlwI GGATC 2 cut(s) 553, 891
Ama87I CYCGRG 2 cut(s) 103, 946
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 6 cut(s) 91, 348, 403, 487, 501, 663
ApeKI GCWGC 4 cut(s) 163, 361, 580, 1096
ApoI RAATTY 1 cut(s) 1034
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
Asp700I GAANNNNTTC 1 cut(s) 62
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 3 cut(s) 266, 382, 465
AspS9I GGNCC 5 cut(s) 325, 403, 488, 664, 971
AsuC2I CCSGG 2 cut(s) 816, 890
AsuHPI GGTGA 7 cut(s) 286, 490, 604, 667, 851, 878, 1093
AvaI CYCGRG 2 cut(s) 103, 946
AvaII GGWCC 2 cut(s) 325, 971
BaeGI GKGCMC 1 cut(s) 686
BanI GGYRCC 2 cut(s) 14, 263
BauI CACGAG 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 823
BbvI GCAGC 4 cut(s) 175, 373, 567, 1083
BccI CCATC 4 cut(s) 251, 394, 652, 1061
BceAI ACGGC 5 cut(s) 319, 326, 581, 664, 917
BciT130I CCWGG 2 cut(s) 407, 729
BcnI CCSGG 2 cut(s) 816, 890
BcoDI GTCTC 3 cut(s) 113, 928, 994
BfmI CTRYAG 1 cut(s) 1097
BfoI RGCGCY 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 763
BglI GCCNNNNNGGC 1 cut(s) 347
Bme1390I CCNGG 4 cut(s) 407, 729, 816, 890
Bme18I GGWCC 2 cut(s) 325, 971
BmeT110I CYCGRG 2 cut(s) 103, 946
BmgBI CACGTC 1 cut(s) 639
BmgT120I GGNCC 5 cut(s) 325, 403, 488, 664, 971
BmiI GGNNCC 2 cut(s) 16, 265
BmrFI CCNGG 4 cut(s) 407, 729, 816, 890
BoxI GACNNNNGTC 2 cut(s) 105, 371
BplI GAGNNNNNCTC 2 cut(s) 974, 1006
BpmI CTGGAG 2 cut(s) 750, 833
BpuMI CCSGG 2 cut(s) 816, 890
BsaHI GRCGYC 2 cut(s) 183, 264
BsaI GGTCTC 2 cut(s) 113, 994
BsaJI CCNNGG 4 cut(s) 301, 406, 727, 814
BsaWI WCCGGW 1 cut(s) 517
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 5 cut(s) 459, 496, 568, 815, 895
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 2 cut(s) 407, 729
BseDI CCNNGG 4 cut(s) 301, 406, 727, 814
BseGI GGATG 4 cut(s) 132, 538, 805, 1072
BseLI CCNNNNNNNGG 5 cut(s) 459, 496, 568, 815, 895
BseRI GAGGAG 2 cut(s) 103, 590
BseSI GKGCMC 1 cut(s) 686
BseX3I CGGCCG 1 cut(s) 501
BseXI GCAGC 4 cut(s) 175, 373, 567, 1083
BseYI CCCAGC 3 cut(s) 568, 583, 604
Bsh1236I CGCG 3 cut(s) 382, 465, 919
Bsh1285I CGRYCG 4 cut(s) 232, 336, 504, 930
BshFI GGCC 6 cut(s) 93, 350, 405, 489, 503, 665
BshNI GGYRCC 2 cut(s) 14, 263
BsiEI CGRYCG 4 cut(s) 232, 336, 504, 930
BsiHKAI GWGCWC 1 cut(s) 823
BsiHKCI CYCGRG 2 cut(s) 103, 946
BsiSI CCGG 6 cut(s) 497, 518, 816, 889, 980, 995
BsiWI CGTACG 1 cut(s) 329
BslFI GGGAC 1 cut(s) 797
BslI CCNNNNNNNGG 5 cut(s) 459, 496, 568, 815, 895
BsmAI GTCTC 3 cut(s) 113, 928, 994
BsmFI GGGAC 1 cut(s) 797
BsnI GGCC 6 cut(s) 93, 350, 405, 489, 503, 665
Bso31I GGTCTC 2 cut(s) 113, 994
BsoBI CYCGRG 2 cut(s) 103, 946
Bsp1286I GDGCHC 2 cut(s) 686, 823
Bsp13I TCCGGA 1 cut(s) 517
Bsp1407I TGTACA 1 cut(s) 438
BspANI GGCC 6 cut(s) 93, 350, 405, 489, 503, 665
BspEI TCCGGA 1 cut(s) 517
BspFNI CGCG 3 cut(s) 382, 465, 919
BspHI TCATGA 1 cut(s) 1038
BspLI GGNNCC 2 cut(s) 16, 265
BspMAI CTGCAG 1 cut(s) 1101
BspMI ACCTGC 1 cut(s) 763
BspPI GGATC 2 cut(s) 553, 891
BspT107I GGYRCC 2 cut(s) 14, 263
BspTNI GGTCTC 2 cut(s) 113, 994
BsrBI CCGCTC 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 438
BssECI CCNNGG 4 cut(s) 301, 406, 727, 814
BssNI GRCGYC 2 cut(s) 183, 264
BssSI CACGAG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 407, 729
Bst4CI ACNGT 5 cut(s) 316, 329, 392, 703, 722
BstACI GRCGYC 2 cut(s) 183, 264
BstAUI TGTACA 1 cut(s) 438
BstC8I GCNNGC 5 cut(s) 268, 457, 461, 615, 1005
BstDEI CTNAG 1 cut(s) 742
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 4 cut(s) 132, 538, 805, 1072
BstFNI CGCG 3 cut(s) 382, 465, 919
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 3 cut(s) 266, 382, 465
BstMAI GTCTC 3 cut(s) 113, 928, 994
BstMCI CGRYCG 4 cut(s) 232, 336, 504, 930
BstMWI GCNNNNNNNGC 9 cut(s) 163, 267, 270, 347, 586, 610, 778, 991, 1000
BstNI CCWGG 2 cut(s) 407, 729
BstPAI GACNNNNGTC 2 cut(s) 105, 371
BstSCI CCNGG 4 cut(s) 405, 727, 814, 888
BstSFI CTRYAG 1 cut(s) 1097
BstSLI GKGCMC 1 cut(s) 686
BstUI CGCG 3 cut(s) 382, 465, 919
BstV1I GCAGC 4 cut(s) 175, 373, 567, 1083
BstX2I RGATCY 1 cut(s) 558
BstYI RGATCY 1 cut(s) 558
BstZI CGGCCG 1 cut(s) 501
BsuRI GGCC 6 cut(s) 93, 350, 405, 489, 503, 665
BtgI CCRYGG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 639
BtsCI GGATG 4 cut(s) 132, 538, 805, 1072
BtsIMutI CAGTG 1 cut(s) 727
BveI ACCTGC 1 cut(s) 763
Cac8I GCNNGC 5 cut(s) 268, 457, 461, 615, 1005
CciI TCATGA 1 cut(s) 1038
CfoI GCGC 3 cut(s) 266, 382, 465
Cfr13I GGNCC 5 cut(s) 325, 403, 488, 664, 971
CseI GACGC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 15, 330, 439
CviAII CATG 2 cut(s) 911, 1039
CviQI GTAC 3 cut(s) 15, 330, 439
DdeI CTNAG 1 cut(s) 742
DinI GGCGCC 1 cut(s) 265
DraIII CACNNNGTG 2 cut(s) 722, 892
EaeI YGGCCR 1 cut(s) 501
EagI CGGCCG 1 cut(s) 501
EciI GGCGGA 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 501
Eco147I AGGCCT 2 cut(s) 93, 350
Eco31I GGTCTC 2 cut(s) 113, 994
Eco47I GGWCC 2 cut(s) 325, 971
Eco52I CGGCCG 1 cut(s) 501
Eco57I CTGAAG 2 cut(s) 458, 647
Eco88I CYCGRG 2 cut(s) 103, 946
EcoRI GAATTC 1 cut(s) 1034
EcoRII CCWGG 2 cut(s) 405, 727
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
FaeI CATG 2 cut(s) 914, 1042
FaiI YATR 8 cut(s) 39, 203, 308, 526, 759, 912, 1040, 1092
FaqI GGGAC 1 cut(s) 797
FatI CATG 2 cut(s) 910, 1038
FauI CCCGC 1 cut(s) 684
FblI GTMKAC 1 cut(s) 99
FokI GGATG 4 cut(s) 119, 545, 812, 1079
GlaI GCGC 3 cut(s) 265, 381, 464
GsaI CCCAGC 3 cut(s) 572, 587, 608
GsuI CTGGAG 2 cut(s) 750, 833
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 6 cut(s) 93, 350, 405, 489, 503, 665
HapII CCGG 6 cut(s) 497, 518, 816, 889, 980, 995
HgaI GACGC 1 cut(s) 191
HhaI GCGC 3 cut(s) 266, 382, 465
Hin1I GRCGYC 2 cut(s) 183, 264
Hin1II CATG 2 cut(s) 914, 1042
Hin6I GCGC 3 cut(s) 264, 380, 463
HinP1I GCGC 3 cut(s) 264, 380, 463
HincII GTYRAC 4 cut(s) 100, 250, 433, 738
HindII GTYRAC 4 cut(s) 100, 250, 433, 738
HinfI GANTC 4 cut(s) 71, 84, 101, 126
HpaII CCGG 6 cut(s) 497, 518, 816, 889, 980, 995
HphI GGTGA 7 cut(s) 286, 490, 604, 667, 851, 878, 1093
Hpy166II GTNNAC 5 cut(s) 100, 250, 433, 441, 738
Hpy188I TCNGA 4 cut(s) 83, 214, 229, 1033
Hpy188III TCNNGA 9 cut(s) 289, 323, 518, 644, 752, 850, 925, 1039, 1054
Hpy8I GTNNAC 5 cut(s) 100, 250, 433, 441, 738
Hpy99I CGWCG 8 cut(s) 71, 101, 185, 316, 370, 509, 512, 515
HpyAV CCTTC 5 cut(s) 361, 482, 593, 622, 641
HpyCH4III ACNGT 5 cut(s) 316, 329, 392, 703, 722
HpyCH4IV ACGT 5 cut(s) 429, 513, 638, 713, 834
HpyCH4V TGCA 3 cut(s) 163, 772, 1099
HpyF10VI GCNNNNNNNGC 9 cut(s) 163, 267, 270, 347, 586, 610, 778, 991, 1000
HpyF3I CTNAG 1 cut(s) 742
HpySE526I ACGT 5 cut(s) 429, 513, 638, 713, 834
Hsp92I GRCGYC 2 cut(s) 183, 264
Hsp92II CATG 2 cut(s) 914, 1042
HspAI GCGC 3 cut(s) 264, 380, 463
KasI GGCGCC 1 cut(s) 263
Kpn2I TCCGGA 1 cut(s) 517
KpnI GGTACC 1 cut(s) 18
LmnI GCTCC 3 cut(s) 242, 577, 982
Lsp1109I GCAGC 4 cut(s) 175, 373, 567, 1083
MaeII ACGT 5 cut(s) 429, 513, 638, 713, 834
MaeIII GTNAC 2 cut(s) 714, 722
MbiI CCGCTC 1 cut(s) 237
MboII GAAGA 4 cut(s) 62, 121, 277, 1042
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 1 cut(s) 558
MhlI GDGCHC 2 cut(s) 686, 823
MluCI AATT 5 cut(s) 62, 158, 537, 1034, 1084
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 3 cut(s) 65, 93, 95
MmeI TCCRAC 3 cut(s) 237, 450, 586
MroI TCCGGA 1 cut(s) 517
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 6 cut(s) 497, 518, 816, 889, 980, 995
MspR9I CCNGG 4 cut(s) 407, 729, 816, 890
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 2 cut(s) 407, 729
MvnI CGCG 3 cut(s) 382, 465, 919
MwoI GCNNNNNNNGC 9 cut(s) 163, 267, 270, 347, 586, 610, 778, 991, 1000
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 2 cut(s) 816, 890
NlaIII CATG 2 cut(s) 914, 1042
NlaIV GGNNCC 2 cut(s) 16, 265
NmeAIII GCCGAG 1 cut(s) 465
NmuCI GTSAC 2 cut(s) 714, 722
PagI TCATGA 1 cut(s) 1038
PceI AGGCCT 2 cut(s) 93, 350
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 126
Pfl23II CGTACG 1 cut(s) 329
PflFI GACNNNGTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 568
Ple19I CGATCG 3 cut(s) 232, 336, 930
PleI GAGTC 3 cut(s) 65, 92, 95
PluTI GGCGCC 1 cut(s) 267
PpsI GAGTC 3 cut(s) 65, 92, 95
PshAI GACNNNNGTC 2 cut(s) 105, 371
Psp1406I AACGTT 2 cut(s) 429, 834
Psp6I CCWGG 2 cut(s) 405, 727
PspFI CCCAGC 3 cut(s) 568, 583, 604
PspGI CCWGG 2 cut(s) 405, 727
PspLI CGTACG 1 cut(s) 329
PspN4I GGNNCC 2 cut(s) 16, 265
PspPI GGNCC 5 cut(s) 325, 403, 488, 664, 971
PstI CTGCAG 1 cut(s) 1101
PsuI RGATCY 1 cut(s) 558
PsyI GACNNNGTC 1 cut(s) 254
PvuI CGATCG 3 cut(s) 232, 336, 930
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 3 cut(s) 16, 331, 440
RsaNI GTAC 3 cut(s) 15, 330, 439
RseI CAYNNNNRTG 1 cut(s) 762
SalI GTCGAC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 777
Sau96I GGNCC 5 cut(s) 325, 403, 488, 664, 971
SchI GAGTC 3 cut(s) 65, 93, 95
ScrFI CCNGG 4 cut(s) 407, 729, 816, 890
SduI GDGCHC 2 cut(s) 686, 823
SfcI CTRYAG 1 cut(s) 1097
SfoI GGCGCC 1 cut(s) 265
SinI GGWCC 2 cut(s) 325, 971
SmiMI CAYNNNNRTG 1 cut(s) 762
Sse9I AATT 5 cut(s) 62, 158, 537, 1034, 1084
SseBI AGGCCT 2 cut(s) 93, 350
SspDI GGCGCC 1 cut(s) 263
StuI AGGCCT 2 cut(s) 93, 350
StyD4I CCNGG 4 cut(s) 405, 727, 814, 888
TaaI ACNGT 5 cut(s) 316, 329, 392, 703, 722
TaiI ACGT 5 cut(s) 432, 516, 641, 716, 837
TaqI TCGA 4 cut(s) 43, 66, 99, 926
TasI AATT 5 cut(s) 62, 158, 537, 1034, 1084
TatI WGTACW 1 cut(s) 438
TauI GCSGC 9 cut(s) 8, 237, 264, 273, 341, 455, 503, 665, 919
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 2 cut(s) 714, 722
TseI GCWGC 4 cut(s) 163, 361, 580, 1096
Tsp45I GTSAC 2 cut(s) 714, 722
TspDTI ATGAA 3 cut(s) 121, 549, 1027
TspGWI ACGGA 2 cut(s) 383, 963
TspRI CASTG 1 cut(s) 727
Tth111I GACNNNGTC 1 cut(s) 254
Van91I CCANNNNNTGG 1 cut(s) 568
VpaK11BI GGWCC 2 cut(s) 325, 971
XapI RAATTY 1 cut(s) 1034
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.