Rroxscaffold_6G00425780

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001116
Physical Location & Seq
Reverse (-)
46772957 .. 46773172
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425780.1

Sequence Viewer

Length: 216 bp
ATGGGCCGTGGCGTATCGTATCTCTCCAACGTCGACTTGTACACCTCCAAAGCCGCCACCGGCGCGACACGCTTCAGTAAGGCTCGGCCTGTTCCGGCGGCCGTTGACGAAGTTACCGAGATTTGTAGAGATGAAATTGTGGCGTGGAACAAGGAGATCCAACCCACATTATGTGGTGTGGAACAAGGAGATCCAACCCACATTATTGGAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

71

Amino Acids

7.59

Weight (kDa)

5.15

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 65
AciI CCGC 2 cut(s) 54, 98
AclWI GGATC 2 cut(s) 151, 185
AcoI YGGCCR 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 58
AfaI GTAC 1 cut(s) 41
AlwI GGATC 2 cut(s) 151, 185
AoxI GGCC 3 cut(s) 4, 86, 99
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 54, 99
BlsI GCNGC 2 cut(s) 55, 100
BmgT120I GGNCC 1 cut(s) 4
BsaJI CCNNGG 1 cut(s) 7
Bse118I RCCGGY 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 7
BseX3I CGGCCG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 3 cut(s) 6, 88, 101
BsiEI CGRYCG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 60, 95
BsnI GGCC 3 cut(s) 6, 88, 101
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 2 cut(s) 156, 190
BspACI CCGC 2 cut(s) 54, 98
BspANI GGCC 3 cut(s) 6, 88, 101
BspFNI CGCG 1 cut(s) 65
BspPI GGATC 2 cut(s) 151, 185
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 156, 190
BstAUI TGTACA 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 7
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 159, 193
BstMBI GATC 2 cut(s) 156, 190
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 62, 69
BstUI CGCG 1 cut(s) 65
BstX2I RGATCY 2 cut(s) 156, 190
BstXI CCANNNNNNTGG 1 cut(s) 206
BstYI RGATCY 2 cut(s) 156, 190
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 3 cut(s) 6, 88, 101
BtgI CCRYGG 1 cut(s) 7
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 5 cut(s) 6, 53, 83, 88, 101
CviKI_1 RGCY 5 cut(s) 6, 53, 83, 88, 101
CviQI GTAC 1 cut(s) 40
DpnI GATC 2 cut(s) 158, 192
DpnII GATC 2 cut(s) 156, 190
EaeI YGGCCR 1 cut(s) 99
EagI CGGCCG 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 58
FaiI YATR 1 cut(s) 172
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 54, 99
Fsp4HI GCNGC 2 cut(s) 54, 99
GlaI GCGC 1 cut(s) 64
GluI GCNGC 2 cut(s) 54, 99
HaeIII GGCC 3 cut(s) 6, 88, 101
HapII CCGG 2 cut(s) 60, 95
HhaI GCGC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 2 cut(s) 34, 106
HindII GTYRAC 2 cut(s) 34, 106
HpaII CCGG 2 cut(s) 60, 95
Hpy166II GTNNAC 3 cut(s) 34, 42, 106
Hpy8I GTNNAC 3 cut(s) 34, 42, 106
Hpy99I CGWCG 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 69
HpySE526I ACGT 1 cut(s) 30
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 156, 190
LpnPI CCDG 3 cut(s) 73, 102, 108
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 112
MalI GATC 2 cut(s) 158, 192
MboI GATC 2 cut(s) 156, 190
MflI RGATCY 2 cut(s) 156, 190
MluCI AATT 1 cut(s) 135
MmeI TCCRAC 2 cut(s) 51, 184
MnlI CCTC 2 cut(s) 55, 203
MspI CCGG 2 cut(s) 60, 95
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 62, 69
NdeII GATC 2 cut(s) 156, 190
NmeAIII GCCGAG 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PkrI GCNGC 2 cut(s) 55, 100
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 2 cut(s) 156, 190
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SalI GTCGAC 1 cut(s) 32
SatI GCNGC 2 cut(s) 54, 99
Sau3AI GATC 2 cut(s) 156, 190
Sau96I GGNCC 1 cut(s) 4
SetI ASST 2 cut(s) 33, 47
SgrAI CRCCGGYG 1 cut(s) 59
Sse9I AATT 1 cut(s) 135
SsiI CCGC 2 cut(s) 54, 98
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 135
TatI WGTACW 1 cut(s) 39
TauI GCSGC 2 cut(s) 56, 101
TspDTI ATGAA 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.