pycom16g01790

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001116
Physical Location & Seq
Reverse (-)
1097386 .. 1099785
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01790.1

Sequence Viewer

Length: 1188 bp
ATGCACAGTGCCTGCTGCCTAAATCCAGGGCCTCTGTATCATCCTTTCGGACTTTGTGGTAAGCAATTTTCTCTGACCGGAAAAAGAGAACCCATGGCGGCGAACACCACGATCGGCGGTGAACGGGATTACGATAGAGCTGAAGAAGTCAAGAAATTCGACCAATCCAAGTTCGGAGTTAAGGGCCTCGTTGACTCAGGCCTCACCTCCATCCCCCGCTTCTTCATCCACCCACCGGAATCTCTACCCGACCCCCGACACCATACCAAACCCGATACCCCAATCCCCACCATCGACCTGGCGGATCTTCACACCGATCGCCGCTCCTCCGTCGTCGATCAAATCAGCCGCGCCTGCCGGACGTTCGGGTTCTTCCAGATCACTAATCACGGCATCCCATCGGTAACTCTTGACCGCACGATTGCAGCCGTCAGGGCCTTCCACGAGCAGCCGACGGAGGTGAAAGCGCGGTTCTACCGCAGAGAGATGGGCACGGGCGTATCGTATATCTCCAACGTGGACCTCTACAGCTCAAAAGCCGCCAGCTGGAGGGACACGCTTCAAGTGAGGTTGGGCCCGATTCCCGCTGTTCCTGAAGAAGTACCGGAGATTTGCCGGGAGGATGTTGTTGAGTGGGACCGCGAGATCAAACGGCTGGGGGAGGTGCTGATGGAGCTGGCGAGCGAAGGCCTGGGATTGAACGCGAAGAGGTTGCAGGAGATGACGTGTCTGGAAGGGAGGGTAATGGCGGGCCATTACTACCCGTACTGCCCGCAACCTGATCTAACGGTTGGGCTAACATCTCATTCTGACCCGGGGGTGCTGGCCGTGGTGCTTCAGGACCGCATGGGTGGGCTGCAGGTTAAGTACGGTGAGGGTTGGGTGGATGTGAAACCTGTCCCCGGTGCCCTCGTCATCAACGTTGGGGATTTTCTTCAGATTGTGTCCAATGGTGAATACCGAAGTGTGGATCATCGTGTGTTGGCGAACTCATCCCGTGAACCCCGTGTGTCAATCGCTGTGTTTTTCAATGTGAGTAGAAGGGATGACTCATACGGGCCGTTGCCGGAGCTGGTCTCCCCGGAGAAACCAGCGCTTTACCGGCAGTTTACGCTTTCAGAGTTCATGCAAAGGTTCTTCAATAAGGGGTTGGATGGCAAAGCTTTGGTAAATCACTTTGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

396

Amino Acids

44.19

Weight (kDa)

6.33

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 95 - 190 5e-20 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 248 - 344 3.4e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 850
AccB1I GGYRCC 1 cut(s) 905
AccBSI CCGCTC 1 cut(s) 324
AccII CGCG 4 cut(s) 351, 469, 642, 704
AclI AACGTT 1 cut(s) 921
AclWI GGATC 2 cut(s) 312, 978
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 4 cut(s) 162, 615, 821, 920
AfaI GTAC 3 cut(s) 603, 767, 869
AfeI AGCGCT 1 cut(s) 1095
AfiI CCNNNNNNNGG 5 cut(s) 235, 546, 549, 902, 967
AflIII ACRYGT 1 cut(s) 725
AgsI TTSAA 4 cut(s) 563, 700, 1030, 1141
AjiI CACGTC 1 cut(s) 726
AjnI CCWGG 3 cut(s) 25, 297, 690
AluBI AGCT 7 cut(s) 140, 531, 546, 676, 1072, 1163, 1183
AluI AGCT 7 cut(s) 140, 531, 546, 676, 1072, 1163, 1183
Alw26I GTCTC 1 cut(s) 1081
AlwI GGATC 2 cut(s) 312, 978
AlwNI CAGNNNCTG 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 814
Aor51HI AGCGCT 1 cut(s) 1095
AoxI GGCC 9 cut(s) 29, 184, 199, 435, 574, 688, 751, 825, 1058
ApaI GGGCCC 1 cut(s) 578
ApeKI GCWGC 4 cut(s) 15, 425, 448, 856
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 3 cut(s) 353, 469, 1096
AsuC2I CCSGG 5 cut(s) 617, 815, 816, 903, 1082
AsuHPI GGTGA 5 cut(s) 131, 196, 472, 884, 965
AvaI CYCGRG 1 cut(s) 814
AvaII GGWCC 3 cut(s) 520, 637, 841
BaeGI GKGCMC 3 cut(s) 494, 578, 910
BaeI ACNNNNGTAYC 2 cut(s) 483, 516
BanI GGYRCC 1 cut(s) 905
BanII GRGCYC 1 cut(s) 578
BauI CACGAG 1 cut(s) 443
BbvI GCAGC 4 cut(s) 2, 437, 460, 843
BccI CCATC 6 cut(s) 218, 299, 406, 481, 664, 1148
BceAI ACGGC 5 cut(s) 406, 413, 668, 812, 1045
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 3 cut(s) 27, 299, 692
BcnI CCSGG 5 cut(s) 617, 815, 816, 903, 1082
BcoDI GTCTC 1 cut(s) 1081
BfmI CTRYAG 2 cut(s) 526, 857
BfoI RGCGCY 1 cut(s) 1097
BfuAI ACCTGC 1 cut(s) 850
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 8 cut(s) 16, 99, 322, 349, 426, 449, 540, 857
BlsI GCNGC 8 cut(s) 17, 100, 323, 350, 427, 450, 541, 858
Bme1390I CCNGG 8 cut(s) 27, 299, 617, 692, 815, 816, 903, 1082
Bme18I GGWCC 3 cut(s) 520, 637, 841
BmeT110I CYCGRG 1 cut(s) 814
BmgBI CACGTC 1 cut(s) 726
BmiI GGNNCC 3 cut(s) 576, 638, 907
BmrFI CCNGG 8 cut(s) 27, 299, 617, 692, 815, 816, 903, 1082
BmsI GCATC 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 1061, 1093
BpmI CTGGAG 1 cut(s) 568
BpuMI CCSGG 5 cut(s) 617, 815, 816, 903, 1082
BsaI GGTCTC 1 cut(s) 1081
BsaJI CCNNGG 8 cut(s) 26, 93, 691, 814, 815, 828, 901, 1080
BsaWI WCCGGW 3 cut(s) 77, 235, 604
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 5 cut(s) 235, 546, 549, 902, 967
Bse118I RCCGGY 1 cut(s) 1101
BseBI CCWGG 3 cut(s) 27, 299, 692
BseDI CCNNGG 8 cut(s) 26, 93, 691, 814, 815, 828, 901, 1080
BseGI GGATG 9 cut(s) 40, 210, 225, 393, 628, 892, 992, 1051, 1159
BseLI CCNNNNNNNGG 5 cut(s) 235, 546, 549, 902, 967
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 316
BseSI GKGCMC 3 cut(s) 494, 578, 910
BseXI GCAGC 4 cut(s) 2, 437, 460, 843
BseYI CCCAGC 1 cut(s) 655
Bsh1236I CGCG 4 cut(s) 351, 469, 642, 704
Bsh1285I CGRYCG 2 cut(s) 114, 319
BshFI GGCC 9 cut(s) 31, 186, 201, 437, 576, 690, 753, 827, 1060
BshNI GGYRCC 1 cut(s) 905
BsiEI CGRYCG 2 cut(s) 114, 319
BsiHKCI CYCGRG 1 cut(s) 814
BslFI GGGAC 3 cut(s) 566, 650, 884
BslI CCNNNNNNNGG 5 cut(s) 235, 546, 549, 902, 967
BsmAI GTCTC 1 cut(s) 1081
BsmFI GGGAC 3 cut(s) 566, 650, 884
BsnI GGCC 9 cut(s) 31, 186, 201, 437, 576, 690, 753, 827, 1060
Bso31I GGTCTC 1 cut(s) 1081
BsoBI CYCGRG 1 cut(s) 814
Bsp120I GGGCCC 1 cut(s) 574
Bsp1286I GDGCHC 3 cut(s) 494, 578, 910
Bsp143I GATC 8 cut(s) 111, 304, 316, 337, 378, 645, 781, 970
Bsp19I CCATGG 1 cut(s) 93
BspANI GGCC 9 cut(s) 31, 186, 201, 437, 576, 690, 753, 827, 1060
BspCNI CTCAG 1 cut(s) 209
BspFNI CGCG 4 cut(s) 351, 469, 642, 704
BspLI GGNNCC 3 cut(s) 576, 638, 907
BspMAI CTGCAG 1 cut(s) 861
BspMI ACCTGC 1 cut(s) 850
BspPI GGATC 2 cut(s) 312, 978
BspT107I GGYRCC 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 1081
BsrBI CCGCTC 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 1101
BssAI RCCGGY 1 cut(s) 1101
BssECI CCNNGG 8 cut(s) 26, 93, 691, 814, 815, 828, 901, 1080
BssMI GATC 8 cut(s) 111, 304, 316, 337, 378, 645, 781, 970
BssSI CACGAG 1 cut(s) 443
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 3 cut(s) 27, 299, 692
Bst4CI ACNGT 3 cut(s) 8, 790, 872
Bst6I CTCTTC 1 cut(s) 701
BstC8I GCNNGC 8 cut(s) 13, 355, 544, 678, 682, 751, 773, 825
BstDEI CTNAG 1 cut(s) 196
BstDSI CCRYGG 2 cut(s) 93, 828
BstF5I GGATG 9 cut(s) 40, 210, 225, 393, 628, 892, 992, 1051, 1159
BstFNI CGCG 4 cut(s) 351, 469, 642, 704
BstH2I RGCGCY 1 cut(s) 1097
BstHHI GCGC 3 cut(s) 353, 469, 1096
BstKTI GATC 8 cut(s) 114, 307, 319, 340, 381, 648, 784, 973
BstMAI GTCTC 1 cut(s) 1081
BstMBI GATC 8 cut(s) 111, 304, 316, 337, 378, 645, 781, 970
BstMCI CGRYCG 2 cut(s) 114, 319
BstMWI GCNNNNNNNGC 5 cut(s) 354, 434, 673, 1102, 1111
BstNI CCWGG 3 cut(s) 27, 299, 692
BstSCI CCNGG 8 cut(s) 25, 297, 615, 690, 813, 814, 901, 1080
BstSFI CTRYAG 2 cut(s) 526, 857
BstSLI GKGCMC 3 cut(s) 494, 578, 910
BstUI CGCG 4 cut(s) 351, 469, 642, 704
BstV1I GCAGC 4 cut(s) 2, 437, 460, 843
BstX2I RGATCY 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 9 cut(s) 31, 186, 201, 437, 576, 690, 753, 827, 1060
BtgI CCRYGG 2 cut(s) 93, 828
BtrI CACGTC 1 cut(s) 726
BtsCI GGATG 9 cut(s) 40, 210, 225, 393, 628, 892, 992, 1051, 1159
BtsIMutI CAGTG 1 cut(s) 13
BveI ACCTGC 1 cut(s) 850
Cac8I GCNNGC 8 cut(s) 13, 355, 544, 678, 682, 751, 773, 825
CaiI CAGNNNCTG 1 cut(s) 12
CfoI GCGC 3 cut(s) 353, 469, 1096
Cfr10I RCCGGY 1 cut(s) 1101
Cfr9I CCCGGG 1 cut(s) 814
Csp6I GTAC 3 cut(s) 602, 766, 868
CviAII CATG 3 cut(s) 94, 847, 1126
CviQI GTAC 3 cut(s) 602, 766, 868
DdeI CTNAG 1 cut(s) 196
DpnI GATC 8 cut(s) 113, 306, 318, 339, 380, 647, 783, 972
DpnII GATC 8 cut(s) 111, 304, 316, 337, 378, 645, 781, 970
EaeI YGGCCR 1 cut(s) 825
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
EciI GGCGGA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 2 cut(s) 201, 690
Eco24I GRGCYC 1 cut(s) 578
Eco31I GGTCTC 1 cut(s) 1081
Eco47I GGWCC 3 cut(s) 520, 637, 841
Eco47III AGCGCT 1 cut(s) 1095
Eco57I CTGAAG 4 cut(s) 162, 615, 821, 920
Eco88I CYCGRG 1 cut(s) 814
EcoO109I RGGNCCY 3 cut(s) 29, 184, 435
EcoRII CCWGG 3 cut(s) 25, 297, 690
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 97, 850, 1129
FaiI YATR 6 cut(s) 95, 264, 507, 848, 1054, 1127
FaqI GGGAC 3 cut(s) 566, 650, 884
FatI CATG 3 cut(s) 93, 846, 1125
FauI CCCGC 4 cut(s) 224, 592, 742, 780
Fnu4HI GCNGC 8 cut(s) 16, 99, 322, 349, 426, 449, 540, 857
FokI GGATG 9 cut(s) 27, 197, 212, 380, 635, 899, 979, 1058, 1166
FriOI GRGCYC 1 cut(s) 578
Fsp4HI GCNGC 8 cut(s) 16, 99, 322, 349, 426, 449, 540, 857
GlaI GCGC 3 cut(s) 352, 468, 1095
GluI GCNGC 8 cut(s) 16, 99, 322, 349, 426, 449, 540, 857
GsaI CCCAGC 1 cut(s) 659
GsuI CTGGAG 1 cut(s) 568
HaeII RGCGCY 1 cut(s) 1097
HaeIII GGCC 9 cut(s) 31, 186, 201, 437, 576, 690, 753, 827, 1060
HhaI GCGC 3 cut(s) 353, 469, 1096
Hin1II CATG 3 cut(s) 97, 850, 1129
Hin6I GCGC 3 cut(s) 351, 467, 1094
HinP1I GCGC 3 cut(s) 351, 467, 1094
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 1161
HinfI GANTC 4 cut(s) 194, 239, 580, 1049
HphI GGTGA 5 cut(s) 131, 196, 472, 884, 965
Hpy166II GTNNAC 5 cut(s) 122, 193, 520, 1001, 1110
Hpy188I TCNGA 6 cut(s) 50, 75, 176, 811, 939, 1120
Hpy188III TCNNGA 6 cut(s) 151, 376, 410, 593, 731, 839
Hpy8I GTNNAC 5 cut(s) 122, 193, 520, 1001, 1110
Hpy99I CGWCG 3 cut(s) 335, 338, 457
HpyAV CCTTC 4 cut(s) 448, 680, 728, 1035
HpyCH4III ACNGT 3 cut(s) 8, 790, 872
HpyCH4IV ACGT 4 cut(s) 362, 516, 725, 921
HpyCH4V TGCA 5 cut(s) 4, 425, 715, 859, 1129
HpyF10VI GCNNNNNNNGC 5 cut(s) 354, 434, 673, 1102, 1111
HpyF3I CTNAG 1 cut(s) 196
HpySE526I ACGT 4 cut(s) 362, 516, 725, 921
Hsp92II CATG 3 cut(s) 97, 850, 1129
HspAI GCGC 3 cut(s) 351, 467, 1094
Kzo9I GATC 8 cut(s) 111, 304, 316, 337, 378, 645, 781, 970
LmnI GCTCC 3 cut(s) 329, 673, 1069
Lsp1109I GCAGC 4 cut(s) 2, 437, 460, 843
LweI GCATC 1 cut(s) 402
MaeII ACGT 4 cut(s) 362, 516, 725, 921
MaeIII GTNAC 1 cut(s) 403
MalI GATC 8 cut(s) 113, 306, 318, 339, 380, 647, 783, 972
MbiI CCGCTC 1 cut(s) 324
MboI GATC 8 cut(s) 111, 304, 316, 337, 378, 645, 781, 970
MboII GAAGA 8 cut(s) 155, 214, 299, 364, 608, 718, 926, 1129
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 3 cut(s) 494, 578, 910
MluCI AATT 2 cut(s) 65, 155
MlyI GAGTC 2 cut(s) 188, 1043
MmeI TCCRAC 2 cut(s) 537, 1131
MseI TTAA 2 cut(s) 180, 864
MspA1I CMGCKG 2 cut(s) 546, 587
MspR9I CCNGG 8 cut(s) 27, 299, 617, 692, 815, 816, 903, 1082
MvaI CCWGG 3 cut(s) 27, 299, 692
MvnI CGCG 4 cut(s) 351, 469, 642, 704
MwoI GCNNNNNNNGC 5 cut(s) 354, 434, 673, 1102, 1111
NciI CCSGG 5 cut(s) 617, 815, 816, 903, 1082
NcoI CCATGG 1 cut(s) 93
NdeII GATC 8 cut(s) 111, 304, 316, 337, 378, 645, 781, 970
NlaIII CATG 3 cut(s) 97, 850, 1129
NlaIV GGNNCC 3 cut(s) 576, 638, 907
PceI AGGCCT 2 cut(s) 201, 690
PcsI WCGNNNNNNNCGW 2 cut(s) 500, 918
PfeI GAWTC 2 cut(s) 239, 580
PkrI GCNGC 8 cut(s) 17, 100, 323, 350, 427, 450, 541, 858
Ple19I CGATCG 2 cut(s) 114, 319
PleI GAGTC 2 cut(s) 188, 1043
PpsI GAGTC 2 cut(s) 188, 1043
Psp1406I AACGTT 1 cut(s) 921
Psp6I CCWGG 3 cut(s) 25, 297, 690
PspFI CCCAGC 1 cut(s) 655
PspGI CCWGG 3 cut(s) 25, 297, 690
PspN4I GGNNCC 3 cut(s) 576, 638, 907
PspOMI GGGCCC 1 cut(s) 574
PstI CTGCAG 1 cut(s) 861
PstNI CAGNNNCTG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 304
PvuI CGATCG 2 cut(s) 114, 319
PvuII CAGCTG 1 cut(s) 546
RsaI GTAC 3 cut(s) 603, 767, 869
RsaNI GTAC 3 cut(s) 602, 766, 868
SaqAI TTAA 2 cut(s) 180, 864
SatI GCNGC 8 cut(s) 16, 99, 322, 349, 426, 449, 540, 857
Sau3AI GATC 8 cut(s) 111, 304, 316, 337, 378, 645, 781, 970
SchI GAGTC 2 cut(s) 188, 1043
ScrFI CCNGG 8 cut(s) 27, 299, 617, 692, 815, 816, 903, 1082
SduI GDGCHC 3 cut(s) 494, 578, 910
SfaNI GCATC 1 cut(s) 402
SfcI CTRYAG 2 cut(s) 526, 857
SinI GGWCC 3 cut(s) 520, 637, 841
SmaI CCCGGG 1 cut(s) 816
Sse9I AATT 2 cut(s) 65, 155
SseBI AGGCCT 2 cut(s) 201, 690
StuI AGGCCT 2 cut(s) 201, 690
StyD4I CCNGG 8 cut(s) 25, 297, 615, 690, 813, 814, 901, 1080
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 3 cut(s) 8, 790, 872
TaiI ACGT 4 cut(s) 365, 519, 728, 924
TaqI TCGA 3 cut(s) 159, 294, 336
TasI AATT 2 cut(s) 65, 155
TauI GCSGC 4 cut(s) 101, 324, 351, 542
TfiI GAWTC 2 cut(s) 239, 580
Tru1I TTAA 2 cut(s) 180, 864
Tru9I TTAA 2 cut(s) 180, 864
TscAI CASTG 1 cut(s) 13
TseI GCWGC 4 cut(s) 15, 425, 448, 856
TspDTI ATGAA 2 cut(s) 214, 1114
TspGWI ACGGA 2 cut(s) 319, 470
TspMI CCCGGG 1 cut(s) 814
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 3 cut(s) 520, 637, 841
XapI RAATTY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmaI CCCGGG 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.