Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001116

Physical Location & Seq

Genomic Coordinates Reverse (-)

44045282 .. 44047272

Gene Structure 1991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003074

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCCTCCTCGCATTGGTCTTCGTCTCCCACGCAGATTTCACATCGACCCATCTCACCAAGATCATCTCTCACATCGTGAAAAGGCTCAAGGACGCCGACTTCGGCGTGAGGGACGTTGCAGCCCACAACCCGACCCGACGCCCAACCAATCCCCGCCATCGACCTCTCCGACTTCCACTCCAATCTCCGACCTCTCTGCCATTGTCGACCAAGTCAGCGGCGCGTGCTGCAACTTCGGTTTCTTCCAAATCACCAACCACGACATACCGTCGGTGGTTCTCGACCCTACGATTGCCGCCGTCGAGGCCTCCCACGAGCAGCCAACGGAGGTCAAGGCCTGGTTCTACCATAGAGAGATGGGCCAGGGCGTATCGTATCTTTCCAACGTCGACTTGTACACCTCCAAAGTCGCCAGCTGGCACGACACGCTTCAGATAAGCCTCGGACCTGTTCCAGCGGCCATTGACAAAGTTCTAGAGATTTGTAGAGATGAAATTGTGGCTTGGAACAAGGAGATCCAACGGCTGGCAGAGGAGCTACTGGGGCTGGCAAGTGAGGGCTGGGATTGCACGCGGAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

195

Amino Acids

21.69

Weight (kDa)

6.05

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	63 - 147	1.7e-10	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001116)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33740
malus_domestica	MD07G1178500.v1.1 MD16G1019700.v1.1 MD16G1019800.v1.1 MD16G1019900.v1.1 MD16G1020000.v1.1 MD16G1020100.v1.1
prunus_persica	Prupe.1G332200_v2.0.a1
pyrus_communis	pycom16g01780 pycom16g01790 pycom16g01800
rosa_chinensis	RchiOBHm_Chr1g0327761 RchiOBHm_Chr1g0333401 RchiOBHm_Chr4g0443221 RchiOBHm_Chr4g0443231 RchiOBHm_Chr4g0443251 RchiOBHm_Chr4g0443261
rosa_laevigata	RLG00000003074 RLG00000005942 RLG00000005944 RLG00000005945 RLG00000005946 RLG00000008366 RLG00000009730 RLG00000020853
rosa_multiflora	Rmu_co8298297.1_g000001 Rmu_sc0000826.1_g000014 Rmu_sc0000928.1_g000026 Rmu_sc0007238.1_g000006 Rmu_sc0007968.1_g000001 Rmu_sc0018919.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127360 Rroxscaffold_3G00246070 Rroxscaffold_5G00383820 Rroxscaffold_5G00383830 Rroxscaffold_5G00383840 Rroxscaffold_5G00383850 Rroxscaffold_6G00425780
rosa_rugosa	Rorug01G0050200 Rorug04G0344800 Rorug04G0344900 Rorug04G0344900 Rorug04G0345100
rosa_samantha	Rh4AG399600 Rh4AG399800 Rh4AG400000 Rh4BG411300 Rh4BG411600 Rh4BG411700 Rh4BG411800 Rh4CG426900 Rh4CG427000 Rh4DG406400 Rh4DG406500 Rh4DG406700 Rh4DG406900
rosa_wichuraiana	Rw1G006780 Rw4G034470 Rw4G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	526
AccI	GTMKAC	2 cut(s)	207, 390
AccII	CGCG	2 cut(s)	224, 574
AciI	CCGC	5 cut(s)	155, 219, 297, 458, 574
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	1 cut(s)	459
AcuI	CTGAAG	1 cut(s)	416
AcyI	GRCGYC	2 cut(s)	94, 140
AdeI	CACNNNGTG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	14, 526
AhdI	GACNNNNNGTC	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	338, 363
AluBI	AGCT	3 cut(s)	417, 538, 582
AluI	AGCT	3 cut(s)	417, 538, 582
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	4 cut(s)	306, 336, 361, 459
ApeKI	GCWGC	3 cut(s)	120, 228, 319
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	361, 446
AsuHPI	GGTGA	2 cut(s)	47, 244
AvaII	GGWCC	1 cut(s)	446
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	132, 215, 331
BccI	CCATC	3 cut(s)	58, 166, 352
BceAI	ACGGC	2 cut(s)	284, 539
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	2 cut(s)	340, 365
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	476
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	6 cut(s)	121, 220, 229, 297, 320, 459
BlsI	GCNGC	6 cut(s)	122, 221, 230, 298, 321, 460
Bme1390I	CCNGG	2 cut(s)	340, 365
Bme18I	GGWCC	1 cut(s)	446
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	361, 446
BmrFI	CCNGG	2 cut(s)	340, 365
BmrI	ACTGGG	1 cut(s)	551
BmuI	ACTGGG	1 cut(s)	551
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	72
BsaHI	GRCGYC	2 cut(s)	94, 140
BsaJI	CCNNGG	2 cut(s)	364, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 526
Bse1I	ACTGG	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	340, 365
BseDI	CCNNGG	2 cut(s)	364, 442
BseLI	CCNNNNNNNGG	2 cut(s)	14, 526
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	3 cut(s)	132, 215, 331
BseYI	CCCAGC	1 cut(s)	561
Bsh1236I	CGCG	2 cut(s)	224, 574
BshFI	GGCC	4 cut(s)	308, 338, 363, 461
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	14, 526
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	4 cut(s)	308, 338, 363, 461
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	61, 516
BspACI	CCGC	5 cut(s)	155, 219, 297, 458, 574
BspANI	GGCC	4 cut(s)	308, 338, 363, 461
BspFNI	CGCG	2 cut(s)	224, 574
BspPI	GGATC	1 cut(s)	511
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	2 cut(s)	364, 442
BssMI	GATC	2 cut(s)	61, 516
BssNI	GRCGYC	2 cut(s)	94, 140
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	340, 365
Bst4CI	ACNGT	1 cut(s)	270
BstACI	GRCGYC	2 cut(s)	94, 140
BstAUI	TGTACA	1 cut(s)	396
BstC8I	GCNNGC	6 cut(s)	226, 415, 419, 528, 549, 572
BstFNI	CGCG	2 cut(s)	224, 574
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	2 cut(s)	64, 519
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	2 cut(s)	61, 516
BstMWI	GCNNNNNNNGC	6 cut(s)	225, 228, 305, 427, 544, 567
BstNI	CCWGG	2 cut(s)	340, 365
BstSCI	CCNGG	2 cut(s)	338, 363
BstUI	CGCG	2 cut(s)	224, 574
BstV1I	GCAGC	3 cut(s)	132, 215, 331
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
BsuRI	GGCC	4 cut(s)	308, 338, 363, 461
Cac8I	GCNNGC	6 cut(s)	226, 415, 419, 528, 549, 572
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	361, 446
CseI	GACGC	2 cut(s)	102, 148
Csp6I	GTAC	1 cut(s)	397
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	2 cut(s)	63, 518
DpnII	GATC	2 cut(s)	61, 516
DraIII	CACNNNGTG	1 cut(s)	77
DriI	GACNNNNNGTC	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	268
Eco147I	AGGCCT	2 cut(s)	308, 338
Eco47I	GGWCC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	338, 363
Esp3I	CGTCTC	1 cut(s)	29
FaiI	YATR	2 cut(s)	266, 351
FaqI	GGGAC	1 cut(s)	126
FauI	CCCGC	1 cut(s)	162
FblI	GTMKAC	2 cut(s)	207, 390
Fnu4HI	GCNGC	6 cut(s)	121, 220, 229, 297, 320, 459
Fsp4HI	GCNGC	6 cut(s)	121, 220, 229, 297, 320, 459
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	6 cut(s)	121, 220, 229, 297, 320, 459
GsaI	CCCAGC	1 cut(s)	565
HaeIII	GGCC	4 cut(s)	308, 338, 363, 461
HgaI	GACGC	2 cut(s)	102, 148
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	2 cut(s)	94, 140
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	2 cut(s)	208, 391
HindII	GTYRAC	2 cut(s)	208, 391
HphI	GGTGA	2 cut(s)	47, 244
Hpy166II	GTNNAC	3 cut(s)	208, 391, 399
Hpy188I	TCNGA	4 cut(s)	171, 190, 435, 446
Hpy188III	TCNNGA	3 cut(s)	77, 281, 476
Hpy8I	GTNNAC	3 cut(s)	208, 391, 399
Hpy99I	CGWCG	4 cut(s)	142, 274, 305, 392
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	2 cut(s)	115, 387
HpyCH4V	TGCA	3 cut(s)	120, 231, 570
HpyF10VI	GCNNNNNNNGC	6 cut(s)	225, 228, 305, 427, 544, 567
HpySE526I	ACGT	2 cut(s)	115, 387
Hsp92I	GRCGYC	2 cut(s)	94, 140
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	61, 516
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	3 cut(s)	132, 215, 331
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	2 cut(s)	115, 387
MalI	GATC	2 cut(s)	63, 518
MboI	GATC	2 cut(s)	61, 516
MboII	GAAGA	2 cut(s)	11, 235
MflI	RGATCY	1 cut(s)	516
MluCI	AATT	1 cut(s)	495
MmeI	TCCRAC	4 cut(s)	194, 213, 408, 544
MspA1I	CMGCKG	3 cut(s)	219, 417, 458
MspR9I	CCNGG	2 cut(s)	340, 365
MvaI	CCWGG	2 cut(s)	340, 365
MvnI	CGCG	2 cut(s)	224, 574
MwoI	GCNNNNNNNGC	6 cut(s)	225, 228, 305, 427, 544, 567
NdeII	GATC	2 cut(s)	61, 516
PceI	AGGCCT	2 cut(s)	308, 338
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	6 cut(s)	122, 221, 230, 298, 321, 460
Psp6I	CCWGG	2 cut(s)	338, 363
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	2 cut(s)	338, 363
PspPI	GGNCC	2 cut(s)	361, 446
PsuI	RGATCY	1 cut(s)	516
PsyI	GACNNNGTC	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	417
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SalI	GTCGAC	2 cut(s)	206, 389
SatI	GCNGC	6 cut(s)	121, 220, 229, 297, 320, 459
Sau3AI	GATC	2 cut(s)	61, 516
Sau96I	GGNCC	2 cut(s)	361, 446
ScrFI	CCNGG	2 cut(s)	340, 365
SinI	GGWCC	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	1 cut(s)	495
SseBI	AGGCCT	2 cut(s)	308, 338
SsiI	CCGC	5 cut(s)	155, 219, 297, 458, 574
SspMI	CTAG	1 cut(s)	476
StuI	AGGCCT	2 cut(s)	308, 338
StyD4I	CCNGG	2 cut(s)	338, 363
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	2 cut(s)	118, 390
TaqI	TCGA	6 cut(s)	45, 161, 207, 282, 303, 390
TasI	AATT	1 cut(s)	495
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	3 cut(s)	222, 299, 461
TseI	GCWGC	3 cut(s)	120, 228, 319
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	1 cut(s)	341
Tth111I	GACNNNGTC	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	446
XbaI	TCTAGA	1 cut(s)	475
XmiI	GTMKAC	2 cut(s)	207, 390
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.