Rmu_co8298297.1_g000001

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8298297.1
OG0001116
Physical Location & Seq
Reverse (-)
1 .. 871
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8298297.1_g000001.1.cds

Sequence Viewer

Length: 681 bp
atggacctgggggtttcgtatttctccaacatcgacctgtacacgtccaaagccgccagctggcgcgacacgcttcagatgaggctcagccccgtgccgcctgccgccgacgacgttccggaggtttgtagggacgaaattgcggcatggaaccagcagatccaacggctgggagaggaactgctggggctgatgagtgaagggctgggattgcctgcggagaagctgaaggagatgacgtgtctggaagggagggcgatggtgggcaactactacccgccctgcccgcaacctgacctcaccgtagggcttacgtcacacagtgaccctggagtgttgaccgtgctgcttcaagatcaccttggtgggttgcaggttaagcacgaggatgcttggttggatgtgaaacccgtctccggtgctcttgtaatcaacgttggtgatttactccagataatttcaaacgaggaatacaaaagcgtggatcaccgggtgatggcgaatccacaacacgaggcgcgtgtcgcaatagccgtgtttttgaatccgagcaatagagagggcgtgtttggtccgttgccggagctggtctcgtcagagaagccagctctctacagagagttcaagtttacggaattcataatgaggttcttcaagaaagaattgaatggcaaatctttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

227

Amino Acids

25.24

Weight (kDa)

4.98

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 169
AccII CGCG 2 cut(s) 66, 520
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 7 cut(s) 54, 98, 105, 143, 218, 278, 287
AclI AACGTT 1 cut(s) 435
AclWI GGATC 2 cut(s) 154, 492
AcsI RAATTY 1 cut(s) 635
AcuI CTGAAG 2 cut(s) 59, 248
AdeI CACNNNGTG 2 cut(s) 323, 493
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 4 cut(s) 60, 169, 416, 496
AflIII ACRYGT 2 cut(s) 42, 239
AgsI TTSAA 6 cut(s) 353, 462, 544, 625, 655, 667
AjiI CACGTC 2 cut(s) 45, 240
AjnI CCWGG 2 cut(s) 6, 328
AleI CACNNNNGTG 1 cut(s) 363
AluBI AGCT 4 cut(s) 60, 226, 586, 608
AluI AGCT 4 cut(s) 60, 226, 586, 608
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 418, 595
AlwI GGATC 2 cut(s) 154, 492
Aor13HI TCCGGA 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 1 cut(s) 635
AspLEI GCGC 2 cut(s) 66, 520
AspS9I GGNCC 2 cut(s) 4, 572
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 5 cut(s) 292, 350, 452, 479, 505
AvaII GGWCC 2 cut(s) 4, 572
BauI CACGAG 2 cut(s) 383, 512
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 333
BccI CCATC 2 cut(s) 253, 490
BceAI ACGGC 2 cut(s) 182, 518
BciT130I CCWGG 2 cut(s) 8, 330
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 2 cut(s) 418, 595
BfmI CTRYAG 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 364
BisI GCNGC 5 cut(s) 54, 98, 105, 144, 347
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 5 cut(s) 55, 99, 106, 145, 348
Bme1390I CCNGG 3 cut(s) 8, 330, 491
Bme18I GGWCC 2 cut(s) 4, 572
BmgBI CACGTC 2 cut(s) 45, 240
BmgT120I GGNCC 2 cut(s) 4, 572
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 3 cut(s) 8, 330, 491
BmsI GCATC 1 cut(s) 379
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BpmI CTGGAG 2 cut(s) 351, 434
Bpu1102I GCTNAGC 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 3 cut(s) 7, 328, 361
BsaWI WCCGGW 2 cut(s) 118, 416
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 169, 416, 496
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 2 cut(s) 8, 330
BseDI CCNNGG 3 cut(s) 7, 328, 361
BseGI GGATG 2 cut(s) 394, 406
BseLI CCNNNNNNNGG 4 cut(s) 60, 169, 416, 496
BseMII CTCAG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 333
BseYI CCCAGC 3 cut(s) 169, 184, 205
Bsh1236I CGCG 2 cut(s) 66, 520
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 4 cut(s) 119, 417, 490, 581
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 4 cut(s) 60, 169, 416, 496
BsmAI GTCTC 2 cut(s) 418, 595
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 424
Bsp13I TCCGGA 1 cut(s) 118
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 3 cut(s) 159, 355, 484
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 7 cut(s) 54, 98, 105, 143, 218, 278, 287
BspCNI CTCAG 1 cut(s) 99
BspEI TCCGGA 1 cut(s) 118
BspFNI CGCG 2 cut(s) 66, 520
BspLI GGNNCC 1 cut(s) 152
BspMI ACCTGC 1 cut(s) 364
BspPI GGATC 2 cut(s) 154, 492
BspTNI GGTCTC 1 cut(s) 595
BsrGI TGTACA 1 cut(s) 39
BssECI CCNNGG 3 cut(s) 7, 328, 361
BssMI GATC 3 cut(s) 159, 355, 484
BssSI CACGAG 2 cut(s) 383, 512
BssT1I CCWWGG 1 cut(s) 361
Bst2BI CACGAG 2 cut(s) 383, 512
Bst2UI CCWGG 2 cut(s) 8, 330
Bst4CI ACNGT 3 cut(s) 304, 323, 343
BstAUI TGTACA 1 cut(s) 39
BstC8I GCNNGC 6 cut(s) 58, 62, 102, 216, 287, 606
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 394, 406
BstFNI CGCG 2 cut(s) 66, 520
BstHHI GCGC 2 cut(s) 66, 520
BstKTI GATC 3 cut(s) 162, 358, 487
BstMAI GTCTC 2 cut(s) 418, 595
BstMBI GATC 3 cut(s) 159, 355, 484
BstMWI GCNNNNNNNGC 5 cut(s) 70, 211, 286, 379, 524
BstNI CCWGG 2 cut(s) 8, 330
BstSCI CCNGG 3 cut(s) 6, 328, 489
BstSFI CTRYAG 1 cut(s) 613
BstUI CGCG 2 cut(s) 66, 520
BstV1I GCAGC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 272
BtrI CACGTC 2 cut(s) 45, 240
BtsCI GGATG 2 cut(s) 394, 406
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 6 cut(s) 58, 62, 102, 216, 287, 606
CfoI GCGC 2 cut(s) 66, 520
Cfr13I GGNCC 2 cut(s) 4, 572
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 147
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 86
DpnI GATC 3 cut(s) 161, 357, 486
DpnII GATC 3 cut(s) 159, 355, 484
DraIII CACNNNGTG 2 cut(s) 323, 493
Eco130I CCWWGG 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 4, 572
Eco57I CTGAAG 2 cut(s) 59, 248
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 6, 328
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 1 cut(s) 150
FaiI YATR 2 cut(s) 148, 641
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 146
FauI CCCGC 2 cut(s) 285, 294
Fnu4HI GCNGC 5 cut(s) 54, 98, 105, 144, 347
FokI GGATG 2 cut(s) 401, 413
Fsp4HI GCNGC 5 cut(s) 54, 98, 105, 144, 347
GlaI GCGC 2 cut(s) 65, 519
GluI GCNGC 5 cut(s) 54, 98, 105, 144, 347
GsaI CCCAGC 3 cut(s) 173, 188, 209
GsuI CTGGAG 2 cut(s) 351, 434
HapII CCGG 4 cut(s) 119, 417, 490, 581
HhaI GCGC 2 cut(s) 66, 520
Hin1II CATG 1 cut(s) 150
Hin6I GCGC 2 cut(s) 64, 518
HinP1I GCGC 2 cut(s) 64, 518
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 2 cut(s) 502, 544
HpaII CCGG 4 cut(s) 119, 417, 490, 581
HphI GGTGA 5 cut(s) 292, 350, 452, 479, 505
Hpy166II GTNNAC 3 cut(s) 42, 339, 630
Hpy188I TCNGA 3 cut(s) 78, 549, 598
Hpy188III TCNNGA 5 cut(s) 119, 245, 353, 451, 655
Hpy8I GTNNAC 3 cut(s) 42, 339, 630
Hpy99I CGWCG 2 cut(s) 113, 116
HpyAV CCTTC 3 cut(s) 194, 223, 242
HpyCH4III ACNGT 3 cut(s) 304, 323, 343
HpyCH4IV ACGT 5 cut(s) 44, 114, 239, 314, 435
HpyCH4V TGCA 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 211, 286, 379, 524
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 5 cut(s) 44, 114, 239, 314, 435
Hsp92II CATG 1 cut(s) 150
HspAI GCGC 2 cut(s) 64, 518
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 3 cut(s) 159, 355, 484
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 1 cut(s) 333
LweI GCATC 1 cut(s) 379
MaeII ACGT 5 cut(s) 44, 114, 239, 314, 435
MaeIII GTNAC 2 cut(s) 315, 323
MalI GATC 3 cut(s) 161, 357, 486
MboI GATC 3 cut(s) 159, 355, 484
MboII GAAGA 1 cut(s) 643
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 4 cut(s) 138, 456, 635, 662
MmeI TCCRAC 3 cut(s) 51, 187, 378
MroI TCCGGA 1 cut(s) 118
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 2 cut(s) 363, 387
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 4 cut(s) 119, 417, 490, 581
MspR9I CCNGG 3 cut(s) 8, 330, 491
MvaI CCWGG 2 cut(s) 8, 330
MvnI CGCG 2 cut(s) 66, 520
MwoI GCNNNNNNNGC 5 cut(s) 70, 211, 286, 379, 524
NciI CCSGG 1 cut(s) 491
NdeII GATC 3 cut(s) 159, 355, 484
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 315, 323
OliI CACNNNNGTG 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PfeI GAWTC 2 cut(s) 502, 544
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 5 cut(s) 55, 99, 106, 145, 348
Psp1406I AACGTT 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 6, 328
PspFI CCCAGC 3 cut(s) 169, 184, 205
PspGI CCWGG 2 cut(s) 6, 328
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 2 cut(s) 4, 572
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 60
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 2 cut(s) 363, 387
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 5 cut(s) 54, 98, 105, 144, 347
Sau3AI GATC 3 cut(s) 159, 355, 484
Sau96I GGNCC 2 cut(s) 4, 572
ScrFI CCNGG 3 cut(s) 8, 330, 491
SduI GDGCHC 1 cut(s) 424
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 2 cut(s) 4, 572
SmiMI CAYNNNNRTG 2 cut(s) 363, 387
Sse9I AATT 4 cut(s) 138, 456, 635, 662
SsiI CCGC 7 cut(s) 54, 98, 105, 143, 218, 278, 287
StyD4I CCNGG 3 cut(s) 6, 328, 489
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 3 cut(s) 304, 323, 343
TaiI ACGT 5 cut(s) 47, 117, 242, 317, 438
TaqI TCGA 1 cut(s) 33
TasI AATT 4 cut(s) 138, 456, 635, 662
TatI WGTACW 1 cut(s) 39
TauI GCSGC 4 cut(s) 56, 100, 107, 146
TfiI GAWTC 2 cut(s) 502, 544
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 2 cut(s) 315, 323
TseI GCWGC 1 cut(s) 346
Tsp45I GTSAC 2 cut(s) 315, 323
TspDTI ATGAA 1 cut(s) 628
TspGWI ACGGA 2 cut(s) 564, 647
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 169
VpaK11BI GGWCC 2 cut(s) 4, 572
XapI RAATTY 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.