RchiOBHm_Chr4g0443221

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
64460923 .. 64461253
331 bp
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UTR
Exon/CDS
Intron
PRQ41093

Sequence Viewer

Length: 180 bp
ATGTTGATTATTTCGAATGAGGAATACAAAAGCGTGGATCACCGGGTGTTGGCGAATCCACACCACGAGCCTCGTGTCTCAATAGCCGTGTTTTTGAACCCGAGCAATAGAGAGGGGGTGTTTGGTCCTTTCGCGAGAGTTGGTATCTCCGGAGAAGCCAGCTCTCTACAAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.53

Weight (kDa)

6.82

Isoelectric Point (pI)

24.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 149
AclWI GGATC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 45
Ama87I CYCGRG 1 cut(s) 100
Aor13HI TCCGGA 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 32
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 1 cut(s) 125
BauI CACGAG 2 cut(s) 65, 72
BceAI ACGGC 1 cut(s) 71
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 2 cut(s) 43, 150
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 14
Bsp13I TCCGGA 1 cut(s) 149
Bsp143I GATC 1 cut(s) 37
Bsp68I TCGCGA 1 cut(s) 134
BspEI TCCGGA 1 cut(s) 149
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 14
BssMI GATC 1 cut(s) 37
BssSI CACGAG 2 cut(s) 65, 72
Bst2BI CACGAG 2 cut(s) 65, 72
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 160
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 42
BstUI CGCG 1 cut(s) 134
BtuMI TCGCGA 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 125
CviJI RGCY 4 cut(s) 70, 86, 158, 162
CviKI_1 RGCY 4 cut(s) 70, 86, 158, 162
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DraIII CACNNNGTG 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 100
HapII CCGG 2 cut(s) 43, 150
HinfI GANTC 1 cut(s) 55
HpaII CCGG 2 cut(s) 43, 150
HphI GGTGA 1 cut(s) 32
Hpy188III TCNNGA 2 cut(s) 133, 150
Kpn2I TCCGGA 1 cut(s) 149
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 3 cut(s) 56, 163, 172
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MnlI CCTC 3 cut(s) 13, 81, 106
MroI TCCGGA 1 cut(s) 149
MseI TTAA 1 cut(s) 178
MspI CCGG 2 cut(s) 43, 150
MspR9I CCNGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 134
NciI CCSGG 1 cut(s) 44
NdeII GATC 1 cut(s) 37
NruI TCGCGA 1 cut(s) 134
NspV TTCGAA 1 cut(s) 14
PfeI GAWTC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 125
RruI TCGCGA 1 cut(s) 134
SaqAI TTAA 1 cut(s) 178
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 44
SetI ASST 1 cut(s) 164
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 42
TaqI TCGA 1 cut(s) 14
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 178
Tru9I TTAA 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.