Rmu_sc0000928.1_g000026

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000928.1
OG0001116
Physical Location & Seq
Forward (+)
113877 .. 114381
505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000928.1_g000026.1.cds

Sequence Viewer

Length: 363 bp
atgttcctcaacgtgctcttcaatatcaagaatgagatggacccgagcctctttgtcctccactctgatcgtcgctctgccatcgtcaacgaagtcagcggcatgagctggaactttggtttcttccatatcaccaaccacggcataccgttgatagttctagactgtaagatcacggccgtcaaggccttccacgagcagccgacaaaggtcaaagcgcagttctgcagtagagagaggggccagggaggaggagttagatctaatctaatggcagtggtaatgggcgaggaggagggagtgattgggtgtgacgcgagtgcagaggggatcatgatcaatcattctgtgaagcttcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

120

Amino Acids

13.25

Weight (kDa)

6.5

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 317
AciI CCGC 1 cut(s) 99
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 177
AgsI TTSAA 2 cut(s) 22, 359
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 2 cut(s) 108, 355
AluI AGCT 2 cut(s) 108, 355
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 1 cut(s) 338
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 3 cut(s) 177, 186, 241
ApeKI GCWGC 1 cut(s) 199
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 40, 241
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 40
BauI CACGAG 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 31, 89
BceAI ACGGC 3 cut(s) 157, 164, 192
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 1 cut(s) 336
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 185
BglII AGATCT 1 cut(s) 260
BisI GCNGC 2 cut(s) 100, 200
BlsI GCNGC 2 cut(s) 101, 201
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 40, 241
BmiI GGNNCC 2 cut(s) 42, 242
BmrFI CCNGG 1 cut(s) 245
BoxI GACNNNNGTC 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 139, 244
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bse8I GATNNNNATC 1 cut(s) 335
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 2 cut(s) 139, 244
BseJI GATNNNNATC 1 cut(s) 335
BseRI GAGGAG 4 cut(s) 264, 267, 305, 308
BseX3I CGGCCG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 317
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 179, 188, 243
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 43
BsnI GGCC 3 cut(s) 179, 188, 243
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 5 cut(s) 67, 171, 260, 330, 336
BspACI CCGC 1 cut(s) 99
BspANI GGCC 3 cut(s) 179, 188, 243
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 2 cut(s) 42, 242
BspMAI CTGCAG 1 cut(s) 230
BspPI GGATC 1 cut(s) 338
BspQI GCTCTTC 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 139, 244
BssMI GATC 5 cut(s) 67, 171, 260, 330, 336
BssSI CACGAG 1 cut(s) 194
Bst2BI CACGAG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 150, 167
Bst6I CTCTTC 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 139
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 5 cut(s) 70, 174, 263, 333, 339
BstMBI GATC 5 cut(s) 67, 171, 260, 330, 336
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 105, 185
BstNI CCWGG 1 cut(s) 245
BstPAI GACNNNNGTC 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 226
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BstZI CGGCCG 1 cut(s) 177
BsuRI GGCC 3 cut(s) 179, 188, 243
BtgI CCRYGG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
CciI TCATGA 1 cut(s) 333
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 40, 241
CseI GACGC 1 cut(s) 323
CviAII CATG 2 cut(s) 103, 334
CviJI RGCY 7 cut(s) 48, 108, 179, 188, 202, 243, 355
CviKI_1 RGCY 7 cut(s) 48, 108, 179, 188, 202, 243, 355
DpnI GATC 5 cut(s) 69, 173, 262, 332, 338
DpnII GATC 5 cut(s) 67, 171, 260, 330, 336
EaeI YGGCCR 1 cut(s) 177
EagI CGGCCG 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EclXI CGGCCG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 40
Eco52I CGGCCG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 106, 337
FaiI YATR 4 cut(s) 104, 129, 146, 335
FatI CATG 2 cut(s) 102, 333
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 100, 200
Fsp4HI GCNGC 2 cut(s) 100, 200
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 219
GluI GCNGC 2 cut(s) 100, 200
HaeIII GGCC 3 cut(s) 179, 188, 243
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 106, 337
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 353
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 3 cut(s) 28, 161, 334
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 2 cut(s) 150, 167
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 2 cut(s) 228, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 185
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 2 cut(s) 106, 337
HspAI GCGC 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 5 cut(s) 67, 171, 260, 330, 336
LguI GCTCTTC 1 cut(s) 23
LpnPI CCDG 3 cut(s) 94, 230, 257
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 311
MalI GATC 5 cut(s) 69, 173, 262, 332, 338
MboI GATC 5 cut(s) 67, 171, 260, 330, 336
MboII GAAGA 2 cut(s) 10, 115
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 105, 185
NdeII GATC 5 cut(s) 67, 171, 260, 330, 336
NlaIII CATG 2 cut(s) 106, 337
NlaIV GGNNCC 2 cut(s) 42, 242
NmuCI GTSAC 1 cut(s) 311
PagI TCATGA 1 cut(s) 333
PceI AGGCCT 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 101, 201
PshAI GACNNNNGTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 42, 242
PspPI GGNCC 2 cut(s) 40, 241
PstI CTGCAG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 23
SatI GCNGC 2 cut(s) 100, 200
Sau3AI GATC 5 cut(s) 67, 171, 260, 330, 336
Sau96I GGNCC 2 cut(s) 40, 241
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 18
SetI ASST 4 cut(s) 15, 110, 213, 357
SfcI CTRYAG 1 cut(s) 226
SfiI GGCCNNNNNGGCC 1 cut(s) 185
SinI GGWCC 1 cut(s) 40
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 1 cut(s) 99
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 150, 167
TaiI ACGT 1 cut(s) 15
TauI GCSGC 1 cut(s) 102
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 311
TspRI CASTG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 40
XbaI TCTAGA 1 cut(s) 160
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.