Rroxscaffold_2G00127360

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001116
Physical Location & Seq
Reverse (-)
62829725 .. 62832579
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00127360.1

Sequence Viewer

Length: 600 bp
ATGAAGGAGAAGAAGAAGGGCCTGAATTCAAATGACTATGGTTGTGATGATAGTGATTGTGCGAGAGAAGACAGAGTAGCGAGTGGGATAGTGAAGAAGGTCTCCTCCCTTGACCAAGGCAATGGCGGGGCTTCGCGGCCGGCCACCGGAAGAATGGACGAACGTTGCCTTCGGGCTCCGATCGGATCGACACGAAGCCCACGACCCGACACCCAACCAATCCCCACCATCGACCTCTCCGACCTCCACTCCGATCGCCGCTCTGCCATTGTCGACCAAGTCATCGGCGCGTGCCGTAACTTCGGTTTCTTCCAAATCACCAACCACGGCATACCGTCGGTGGTTCTCGACCGTACGATCGCCTCCTTCAAGGCCTCCCACGAGCAGCCGACGGCGGTCAAGGCGCGGTTCTACTGTAGAGAGATGGGCCAAGGCCTATCGTATCTCTCCAACGTCGACCTATACACCTCCAAAGCCGCCAGGTGGCGCGACACGCTTCGGGTAAGGCGGCTGTTGATGAAGTTCCGGAGATTTGTAGAGATGAAATTGTGGCGTGGAACAAGGAGATCCAACCCACATTATTGGAGGGTAATAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

199

Amino Acids

22.61

Weight (kDa)

10.11

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 74 - 171 5.2e-17 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 2 cut(s) 273, 456
AccII CGCG 4 cut(s) 136, 290, 406, 489
AccIII TCCGGA 1 cut(s) 525
AciI CCGC 7 cut(s) 126, 136, 259, 395, 406, 477, 508
AclI AACGTT 1 cut(s) 163
AclWI GGATC 2 cut(s) 193, 561
AcoI YGGCCR 2 cut(s) 137, 141
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 2 cut(s) 146, 483
AgsI TTSAA 2 cut(s) 30, 370
AjnI CCWGG 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 193, 561
Aor13HI TCCGGA 1 cut(s) 525
AoxI GGCC 6 cut(s) 19, 137, 141, 372, 427, 433
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 1 cut(s) 25
AspLEI GCGC 3 cut(s) 290, 406, 489
AspS9I GGNCC 2 cut(s) 19, 427
AsuHPI GGTGA 1 cut(s) 310
BanII GRGCYC 1 cut(s) 178
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 236, 418
BceAI ACGGC 3 cut(s) 279, 343, 408
BciT130I CCWGG 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 106
BfmI CTRYAG 1 cut(s) 415
BisI GCNGC 5 cut(s) 137, 259, 386, 477, 509
BlsI GCNGC 5 cut(s) 138, 260, 387, 478, 510
Bme1390I CCNGG 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 19, 427
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 481
BoxI GACNNNNGTC 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 3 cut(s) 115, 325, 430
BsaWI WCCGGW 2 cut(s) 146, 525
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 483
Bse118I RCCGGY 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 127
BseAI TCCGGA 1 cut(s) 525
BseBI CCWGG 1 cut(s) 481
BseDI CCNNGG 3 cut(s) 115, 325, 430
BseLI CCNNNNNNNGG 2 cut(s) 146, 483
BseMI GCAATG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 94
BseX3I CGGCCG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 397
Bsh1236I CGCG 4 cut(s) 136, 290, 406, 489
Bsh1285I CGRYCG 5 cut(s) 140, 183, 256, 352, 360
BshFI GGCC 6 cut(s) 21, 139, 143, 374, 429, 435
BsiEI CGRYCG 5 cut(s) 140, 183, 256, 352, 360
BsiSI CCGG 3 cut(s) 140, 147, 526
BsiWI CGTACG 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 146, 483
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 6 cut(s) 21, 139, 143, 374, 429, 435
Bso31I GGTCTC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 178
Bsp13I TCCGGA 1 cut(s) 525
Bsp143I GATC 5 cut(s) 180, 185, 253, 357, 566
BspACI CCGC 7 cut(s) 126, 136, 259, 395, 406, 477, 508
BspANI GGCC 6 cut(s) 21, 139, 143, 374, 429, 435
BspEI TCCGGA 1 cut(s) 525
BspFNI CGCG 4 cut(s) 136, 290, 406, 489
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 2 cut(s) 193, 561
BspTNI GGTCTC 1 cut(s) 106
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 3 cut(s) 115, 325, 430
BssMI GATC 5 cut(s) 180, 185, 253, 357, 566
BssSI CACGAG 1 cut(s) 380
BssT1I CCWWGG 2 cut(s) 115, 430
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 3 cut(s) 336, 353, 416
BstC8I GCNNGC 2 cut(s) 141, 292
BstDSI CCRYGG 1 cut(s) 325
BstFNI CGCG 4 cut(s) 136, 290, 406, 489
BstHHI GCGC 3 cut(s) 290, 406, 489
BstKTI GATC 5 cut(s) 183, 188, 256, 360, 569
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 5 cut(s) 180, 185, 253, 357, 566
BstMCI CGRYCG 5 cut(s) 140, 183, 256, 352, 360
BstMWI GCNNNNNNNGC 2 cut(s) 401, 493
BstNI CCWGG 1 cut(s) 481
BstPAI GACNNNNGTC 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 479
BstSFI CTRYAG 1 cut(s) 415
BstUI CGCG 4 cut(s) 136, 290, 406, 489
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 566
BstXI CCANNNNNNTGG 2 cut(s) 122, 582
BstYI RGATCY 1 cut(s) 566
BstZI CGGCCG 1 cut(s) 137
BsuRI GGCC 6 cut(s) 21, 139, 143, 374, 429, 435
BtgI CCRYGG 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 141, 292
CfoI GCGC 3 cut(s) 290, 406, 489
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 2 cut(s) 19, 427
Csp6I GTAC 1 cut(s) 354
CviQI GTAC 1 cut(s) 354
DpnI GATC 5 cut(s) 182, 187, 255, 359, 568
DpnII GATC 5 cut(s) 180, 185, 253, 357, 566
EaeI YGGCCR 2 cut(s) 137, 141
EagI CGGCCG 1 cut(s) 137
EclXI CGGCCG 1 cut(s) 137
Eco130I CCWWGG 2 cut(s) 115, 430
Eco147I AGGCCT 2 cut(s) 374, 435
Eco24I GRGCYC 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 106
Eco52I CGGCCG 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 479
EcoT14I CCWWGG 2 cut(s) 115, 430
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 2 cut(s) 115, 430
FaiI YATR 4 cut(s) 39, 332, 463, 598
FauI CCCGC 1 cut(s) 119
FblI GTMKAC 2 cut(s) 273, 456
Fnu4HI GCNGC 5 cut(s) 137, 259, 386, 477, 509
FriOI GRGCYC 1 cut(s) 178
FseI GGCCGGCC 1 cut(s) 143
Fsp4HI GCNGC 5 cut(s) 137, 259, 386, 477, 509
GlaI GCGC 3 cut(s) 289, 405, 488
GluI GCNGC 5 cut(s) 137, 259, 386, 477, 509
HaeIII GGCC 6 cut(s) 21, 139, 143, 374, 429, 435
HapII CCGG 3 cut(s) 140, 147, 526
HhaI GCGC 3 cut(s) 290, 406, 489
Hin6I GCGC 3 cut(s) 288, 404, 487
HinP1I GCGC 3 cut(s) 288, 404, 487
HincII GTYRAC 2 cut(s) 274, 457
HindII GTYRAC 2 cut(s) 274, 457
HpaII CCGG 3 cut(s) 140, 147, 526
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 274, 457
Hpy188I TCNGA 4 cut(s) 180, 185, 241, 253
Hpy188III TCNNGA 2 cut(s) 347, 526
Hpy8I GTNNAC 2 cut(s) 274, 457
Hpy99I CGWCG 3 cut(s) 340, 394, 458
HpyAV CCTTC 4 cut(s) 10, 91, 179, 376
HpyCH4III ACNGT 3 cut(s) 336, 353, 416
HpyCH4IV ACGT 2 cut(s) 163, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 493
HpySE526I ACGT 2 cut(s) 163, 453
HspAI GCGC 3 cut(s) 288, 404, 487
Kpn2I TCCGGA 1 cut(s) 525
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
Kzo9I GATC 5 cut(s) 180, 185, 253, 357, 566
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 35, 153, 160, 466, 493, 539
Lsp1109I GCAGC 1 cut(s) 397
MaeII ACGT 2 cut(s) 163, 453
MaeIII GTNAC 1 cut(s) 296
MalI GATC 5 cut(s) 182, 187, 255, 359, 568
MbiI CCGCTC 1 cut(s) 261
MboI GATC 5 cut(s) 180, 185, 253, 357, 566
MboII GAAGA 6 cut(s) 22, 25, 80, 106, 162, 301
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 25, 545
MmeI TCCRAC 3 cut(s) 264, 474, 594
MnlI CCTC 7 cut(s) 115, 245, 254, 373, 385, 478, 579
MroI TCCGGA 1 cut(s) 525
MroNI GCCGGC 1 cut(s) 139
MspI CCGG 3 cut(s) 140, 147, 526
MspR9I CCNGG 1 cut(s) 481
MvaI CCWGG 1 cut(s) 481
MvnI CGCG 4 cut(s) 136, 290, 406, 489
MwoI GCNNNNNNNGC 2 cut(s) 401, 493
NaeI GCCGGC 1 cut(s) 141
NdeII GATC 5 cut(s) 180, 185, 253, 357, 566
NgoMIV GCCGGC 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 177
PceI AGGCCT 2 cut(s) 374, 435
PcsI WCGNNNNNNNCGW 2 cut(s) 199, 237
PdiI GCCGGC 1 cut(s) 141
Pfl23II CGTACG 1 cut(s) 353
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 5 cut(s) 138, 260, 387, 478, 510
Ple19I CGATCG 3 cut(s) 183, 256, 360
PshAI GACNNNNGTC 1 cut(s) 395
Psp1406I AACGTT 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspLI CGTACG 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 19, 427
PsuI RGATCY 1 cut(s) 566
PsyI GACNNNGTC 1 cut(s) 278
PvuI CGATCG 3 cut(s) 183, 256, 360
RigI GGCCGGCC 1 cut(s) 143
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SalI GTCGAC 2 cut(s) 272, 455
SatI GCNGC 5 cut(s) 137, 259, 386, 477, 509
Sau3AI GATC 5 cut(s) 180, 185, 253, 357, 566
Sau96I GGNCC 2 cut(s) 19, 427
ScrFI CCNGG 1 cut(s) 481
SduI GDGCHC 1 cut(s) 178
SetI ASST 8 cut(s) 102, 166, 237, 246, 456, 462, 470, 485
SfcI CTRYAG 1 cut(s) 415
Sse9I AATT 2 cut(s) 25, 545
SseBI AGGCCT 2 cut(s) 374, 435
SsiI CCGC 7 cut(s) 126, 136, 259, 395, 406, 477, 508
StuI AGGCCT 2 cut(s) 374, 435
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 2 cut(s) 115, 430
TaaI ACNGT 3 cut(s) 336, 353, 416
TaiI ACGT 2 cut(s) 166, 456
TaqI TCGA 5 cut(s) 188, 231, 273, 348, 456
TasI AATT 2 cut(s) 25, 545
TauI GCSGC 4 cut(s) 139, 261, 479, 511
TseI GCWGC 1 cut(s) 385
TspDTI ATGAA 3 cut(s) 17, 533, 557
Tth111I GACNNNGTC 1 cut(s) 278
XapI RAATTY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmiI GTMKAC 2 cut(s) 273, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.