Rh4BG411800

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001116
Physical Location & Seq
Reverse (-)
56048383 .. 56049226
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG411800.1

Sequence Viewer

Length: 777 bp
ATGATCGCCGCCGTCAAGGCCTTCCACGAGCAGCCTACGGAAGTCAAAGCGCGGTTCTACCGCAGAGAGATGATAGGCCATGGCGTAGCGTATCTATCCAACGTTGACCTGTACATCTCCAAAGCCGCCAGCTGGCGCGACACGCTTCTGGTGAAGCTCGGCCCTTTGCTGGAGGCCGCCGACGACGTTCCGAAGATTTGTAGGGACGAAATAGTTGAGTGGGACGGGGAGATCCGACGGCTGGGAGAGGAGCTTCTGGGGCTGGTGAGTGAAGGGCTGGGATTGCGAGCGGAGAAGCTGAAGGAGATGACGTGTCTGGGTGGGAGGGCGATGGCGGGCCACTACTACCCGCCCTGCCCGCAGCCTGATCTAACGGTTGGGCTTGTTTCACACAGTGACCCTGGAGTATTGACCGTGCTGCTTCAAGATCATATCGGTGGGTTGCAGGTTAAGCACGATGGGGCTTGGGTGGATGTGAAACCTGTCCCCGGTGCTCTTGTGATCAACGTTGGTGATGTACTCCAGGTTATTTCGAACGAGGAATACAAAAGCGTGGATCACCGGGTGTTGGCGAATCCACACAACGAGGCGCGTCTCTCAATAGCCGTGCTTTTGAATCCGAGCAATAGAGAGGGCGTGTTTGGTCCATTGCCGGAGCTGGTCTCGCCAGAGAAGCCAGCTCTCTACAAAGAGTTCAAGTTCTCGGAATTCCTGATGAGGTTCTTCCAGAAGGAATTGAATGACAAATCTTTGGTAAATTACTTTAAGCTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

258

Amino Acids

28.77

Weight (kDa)

5.87

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 110 - 207 1.8e-32 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 290
AccII CGCG 3 cut(s) 52, 138, 592
AciI CCGC 9 cut(s) 9, 52, 61, 126, 177, 290, 335, 350, 359
AclI AACGTT 2 cut(s) 102, 507
AclWI GGATC 2 cut(s) 226, 564
AcsI RAATTY 1 cut(s) 707
AcuI CTGAAG 1 cut(s) 320
AdeI CACNNNGTG 2 cut(s) 395, 565
AfaI GTAC 2 cut(s) 113, 519
AfiI CCNNNNNNNGG 5 cut(s) 132, 169, 241, 488, 568
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 4 cut(s) 425, 616, 697, 739
AjiI CACGTC 1 cut(s) 312
AjnI CCWGG 2 cut(s) 400, 522
AluBI AGCT 7 cut(s) 132, 157, 253, 298, 658, 680, 769
AluI AGCT 7 cut(s) 132, 157, 253, 298, 658, 680, 769
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 2 cut(s) 599, 667
AlwI GGATC 2 cut(s) 226, 564
AoxI GGCC 5 cut(s) 18, 76, 160, 174, 337
ApeKI GCWGC 4 cut(s) 31, 361, 418, 769
ApoI RAATTY 1 cut(s) 707
AspLEI GCGC 3 cut(s) 52, 138, 592
AspS9I GGNCC 3 cut(s) 161, 337, 644
AsuC2I CCSGG 2 cut(s) 489, 563
AsuHPI GGTGA 4 cut(s) 163, 277, 524, 551
AsuII TTCGAA 1 cut(s) 533
AvaII GGWCC 1 cut(s) 644
BauI CACGAG 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 4 cut(s) 43, 373, 405, 756
BccI CCATC 2 cut(s) 325, 452
BceAI ACGGC 2 cut(s) 254, 590
BciT130I CCWGG 2 cut(s) 402, 524
BclI TGATCA 1 cut(s) 501
BcnI CCSGG 2 cut(s) 489, 563
BcoDI GTCTC 2 cut(s) 599, 667
BfuAI ACCTGC 1 cut(s) 436
BglI GCCNNNNNGGC 1 cut(s) 17
BisI GCNGC 7 cut(s) 9, 32, 126, 177, 362, 419, 770
BlsI GCNGC 7 cut(s) 10, 33, 127, 178, 363, 420, 771
Bme1390I CCNGG 4 cut(s) 402, 489, 524, 563
Bme18I GGWCC 1 cut(s) 644
BmgBI CACGTC 1 cut(s) 312
BmgT120I GGNCC 3 cut(s) 161, 337, 644
BmrFI CCNGG 4 cut(s) 402, 489, 524, 563
BplI GAGNNNNNCTC 2 cut(s) 647, 679
BpmI CTGGAG 3 cut(s) 191, 423, 506
Bpu14I TTCGAA 1 cut(s) 533
BpuMI CCSGG 2 cut(s) 489, 563
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 3 cut(s) 79, 400, 487
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 169, 241, 488, 568
Bse3DI GCAATG 1 cut(s) 647
BseBI CCWGG 2 cut(s) 402, 524
BseDI CCNNGG 3 cut(s) 79, 400, 487
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 5 cut(s) 132, 169, 241, 488, 568
BseMI GCAATG 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 4 cut(s) 43, 373, 405, 756
BseYI CCCAGC 2 cut(s) 241, 277
BsgI GTGCAG 1 cut(s) 755
Bsh1236I CGCG 3 cut(s) 52, 138, 592
BshFI GGCC 5 cut(s) 20, 78, 162, 176, 339
BsiHKAI GWGCWC 1 cut(s) 496
BsiSI CCGG 3 cut(s) 489, 562, 653
BslFI GGGAC 3 cut(s) 218, 236, 470
BslI CCNNNNNNNGG 5 cut(s) 132, 169, 241, 488, 568
BsmAI GTCTC 2 cut(s) 599, 667
BsmBI CGTCTC 1 cut(s) 599
BsmFI GGGAC 3 cut(s) 218, 236, 470
BsnI GGCC 5 cut(s) 20, 78, 162, 176, 339
Bso31I GGTCTC 1 cut(s) 667
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 496
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 6 cut(s) 3, 231, 367, 427, 501, 556
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 9 cut(s) 9, 52, 61, 126, 177, 290, 335, 350, 359
BspANI GGCC 5 cut(s) 20, 78, 162, 176, 339
BspFNI CGCG 3 cut(s) 52, 138, 592
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 2 cut(s) 226, 564
BspT104I TTCGAA 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 667
BsrBI CCGCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 647
BsrGI TGTACA 1 cut(s) 111
BssECI CCNNGG 3 cut(s) 79, 400, 487
BssMI GATC 6 cut(s) 3, 231, 367, 427, 501, 556
BssSI CACGAG 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 26
Bst2UI CCWGG 2 cut(s) 402, 524
Bst4CI ACNGT 3 cut(s) 376, 395, 415
BstAUI TGTACA 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 6 cut(s) 130, 134, 288, 337, 359, 678
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 3 cut(s) 52, 138, 592
BstHHI GCGC 3 cut(s) 52, 138, 592
BstKTI GATC 6 cut(s) 6, 234, 370, 430, 504, 559
BstMAI GTCTC 2 cut(s) 599, 667
BstMBI GATC 6 cut(s) 3, 231, 367, 427, 501, 556
BstMWI GCNNNNNNNGC 8 cut(s) 17, 142, 259, 283, 358, 451, 664, 673
BstNI CCWGG 2 cut(s) 402, 524
BstSCI CCNGG 4 cut(s) 400, 487, 522, 561
BstUI CGCG 3 cut(s) 52, 138, 592
BstV1I GCAGC 4 cut(s) 43, 373, 405, 756
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 5 cut(s) 20, 78, 162, 176, 339
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 344
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 2 cut(s) 400, 772
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 6 cut(s) 130, 134, 288, 337, 359, 678
CfoI GCGC 3 cut(s) 52, 138, 592
Cfr13I GGNCC 3 cut(s) 161, 337, 644
CseI GACGC 1 cut(s) 581
Csp6I GTAC 2 cut(s) 112, 518
CviAII CATG 1 cut(s) 80
CviQI GTAC 2 cut(s) 112, 518
DpnI GATC 6 cut(s) 5, 233, 369, 429, 503, 558
DpnII GATC 6 cut(s) 3, 231, 367, 427, 501, 556
DraIII CACNNNGTG 2 cut(s) 395, 565
Eco130I CCWWGG 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 707
EcoRII CCWGG 2 cut(s) 400, 522
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 599
FaeI CATG 1 cut(s) 83
FaiI YATR 2 cut(s) 81, 432
FaqI GGGAC 3 cut(s) 218, 236, 470
FatI CATG 1 cut(s) 79
FauI CCCGC 3 cut(s) 328, 357, 366
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 7 cut(s) 9, 32, 126, 177, 362, 419, 770
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 7 cut(s) 9, 32, 126, 177, 362, 419, 770
GlaI GCGC 3 cut(s) 51, 137, 591
GluI GCNGC 7 cut(s) 9, 32, 126, 177, 362, 419, 770
GsaI CCCAGC 2 cut(s) 245, 281
GsuI CTGGAG 3 cut(s) 191, 423, 506
HaeIII GGCC 5 cut(s) 20, 78, 162, 176, 339
HapII CCGG 3 cut(s) 489, 562, 653
HgaI GACGC 1 cut(s) 581
HhaI GCGC 3 cut(s) 52, 138, 592
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 3 cut(s) 50, 136, 590
HinP1I GCGC 3 cut(s) 50, 136, 590
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 574, 616
HpaII CCGG 3 cut(s) 489, 562, 653
HphI GGTGA 4 cut(s) 163, 277, 524, 551
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 4 cut(s) 192, 236, 621, 706
Hpy188III TCNNGA 3 cut(s) 425, 712, 727
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 3 cut(s) 185, 188, 240
HpyAV CCTTC 4 cut(s) 31, 266, 295, 724
HpyCH4III ACNGT 3 cut(s) 376, 395, 415
HpyCH4IV ACGT 4 cut(s) 102, 186, 311, 507
HpyCH4V TGCA 2 cut(s) 445, 772
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 142, 259, 283, 358, 451, 664, 673
HpySE526I ACGT 4 cut(s) 102, 186, 311, 507
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 3 cut(s) 50, 136, 590
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 6 cut(s) 3, 231, 367, 427, 501, 556
LmnI GCTCC 2 cut(s) 250, 655
Lsp1109I GCAGC 4 cut(s) 43, 373, 405, 756
MaeII ACGT 4 cut(s) 102, 186, 311, 507
MaeIII GTNAC 1 cut(s) 395
MalI GATC 6 cut(s) 5, 233, 369, 429, 503, 558
MbiI CCGCTC 1 cut(s) 290
MboI GATC 6 cut(s) 3, 231, 367, 427, 501, 556
MboII GAAGA 2 cut(s) 205, 715
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 3 cut(s) 707, 734, 757
MmeI TCCRAC 2 cut(s) 123, 259
MnlI CCTC 7 cut(s) 166, 241, 318, 532, 580, 625, 711
MseI TTAA 2 cut(s) 450, 765
MslI CAYNNNNRTG 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 3 cut(s) 489, 562, 653
MspR9I CCNGG 4 cut(s) 402, 489, 524, 563
MvaI CCWGG 2 cut(s) 402, 524
MvnI CGCG 3 cut(s) 52, 138, 592
MwoI GCNNNNNNNGC 8 cut(s) 17, 142, 259, 283, 358, 451, 664, 673
NciI CCSGG 2 cut(s) 489, 563
NcoI CCATGG 1 cut(s) 79
NdeII GATC 6 cut(s) 3, 231, 367, 427, 501, 556
NlaIII CATG 1 cut(s) 83
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 395
NspV TTCGAA 1 cut(s) 533
PceI AGGCCT 1 cut(s) 20
PfeI GAWTC 2 cut(s) 574, 616
PkrI GCNGC 7 cut(s) 10, 33, 127, 178, 363, 420, 771
Psp1406I AACGTT 2 cut(s) 102, 507
Psp6I CCWGG 2 cut(s) 400, 522
PspFI CCCAGC 2 cut(s) 241, 277
PspGI CCWGG 2 cut(s) 400, 522
PspPI GGNCC 3 cut(s) 161, 337, 644
PsrI GAACNNNNNNTAC 2 cut(s) 527, 559
PsuI RGATCY 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 132
RsaI GTAC 2 cut(s) 113, 519
RsaNI GTAC 2 cut(s) 112, 518
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 2 cut(s) 450, 765
SatI GCNGC 7 cut(s) 9, 32, 126, 177, 362, 419, 770
Sau3AI GATC 6 cut(s) 3, 231, 367, 427, 501, 556
Sau96I GGNCC 3 cut(s) 161, 337, 644
ScrFI CCNGG 4 cut(s) 402, 489, 524, 563
SduI GDGCHC 1 cut(s) 496
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 1 cut(s) 644
SmiMI CAYNNNNRTG 1 cut(s) 435
Sse9I AATT 3 cut(s) 707, 734, 757
SseBI AGGCCT 1 cut(s) 20
SsiI CCGC 9 cut(s) 9, 52, 61, 126, 177, 290, 335, 350, 359
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 4 cut(s) 400, 487, 522, 561
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 3 cut(s) 376, 395, 415
TaiI ACGT 4 cut(s) 105, 189, 314, 510
TaqI TCGA 1 cut(s) 533
TasI AATT 3 cut(s) 707, 734, 757
TatI WGTACW 2 cut(s) 111, 517
TauI GCSGC 3 cut(s) 11, 128, 179
TfiI GAWTC 2 cut(s) 574, 616
Tru1I TTAA 2 cut(s) 450, 765
Tru9I TTAA 2 cut(s) 450, 765
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 4 cut(s) 31, 361, 418, 769
Tsp45I GTSAC 1 cut(s) 395
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 644
XapI RAATTY 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.