Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000826.1

Orthogroup ID

OG0001116

Physical Location & Seq

Genomic Coordinates Reverse (-)

36590 .. 37440

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000826.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgggccagggtgtatcgtatctctccaacgtcgacatgtacccctccaaagccgccagctggcgctacacgcttcaggtaaggctcggccctgttccggcgaccgttgacgaagttctggagatttgtagagatgaaattgtggcgtggaacaaggagatccaacggctggcagaggagctgctagggctggcaaggggcaatacaatcaaacgccgaaatccggtcaccagtcaggtagccggatacaggatttcgatggtcggttgccggaattcggtcgccggagtccacggctgccactggttaccggagcacagcaaggtgaatgatgacttctctctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

115

Amino Acids

12.83

Weight (kDa)

7.75

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001116)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33740
malus_domestica	MD07G1178500.v1.1 MD16G1019700.v1.1 MD16G1019800.v1.1 MD16G1019900.v1.1 MD16G1020000.v1.1 MD16G1020100.v1.1
prunus_persica	Prupe.1G332200_v2.0.a1
pyrus_communis	pycom16g01780 pycom16g01790 pycom16g01800
rosa_chinensis	RchiOBHm_Chr1g0327761 RchiOBHm_Chr1g0333401 RchiOBHm_Chr4g0443221 RchiOBHm_Chr4g0443231 RchiOBHm_Chr4g0443251 RchiOBHm_Chr4g0443261
rosa_laevigata	RLG00000003074 RLG00000005942 RLG00000005944 RLG00000005945 RLG00000005946 RLG00000008366 RLG00000009730 RLG00000020853
rosa_multiflora	Rmu_co8298297.1_g000001 Rmu_sc0000826.1_g000014 Rmu_sc0000928.1_g000026 Rmu_sc0007238.1_g000006 Rmu_sc0007968.1_g000001 Rmu_sc0018919.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127360 Rroxscaffold_3G00246070 Rroxscaffold_5G00383820 Rroxscaffold_5G00383830 Rroxscaffold_5G00383840 Rroxscaffold_5G00383850 Rroxscaffold_6G00425780
rosa_rugosa	Rorug01G0050200 Rorug04G0344800 Rorug04G0344900 Rorug04G0344900 Rorug04G0345100
rosa_samantha	Rh4AG399600 Rh4AG399800 Rh4AG400000 Rh4BG411300 Rh4BG411600 Rh4BG411700 Rh4BG411800 Rh4CG426900 Rh4CG427000 Rh4DG406400 Rh4DG406500 Rh4DG406700 Rh4DG406900
rosa_wichuraiana	Rw1G006780 Rw4G034470 Rw4G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	6 cut(s)	60, 97, 169, 223, 249, 277
AflIII	ACRYGT	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	2 cut(s)	60, 181
AluI	AGCT	2 cut(s)	60, 181
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	2 cut(s)	4, 88
ApeKI	GCWGC	2 cut(s)	181, 297
ApoI	RAATTY	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	4, 89
AsuHPI	GGTGA	2 cut(s)	220, 337
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	168, 284
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	2 cut(s)	182, 310
BciT130I	CCWGG	1 cut(s)	8
BciVI	GTATCC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	3 cut(s)	54, 182, 298
BlsI	GCNGC	3 cut(s)	55, 183, 299
Bme1390I	CCNGG	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	4, 89
BmrFI	CCNGG	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	7, 292
BsaWI	WCCGGW	2 cut(s)	223, 310
Bsc4I	CCNNNNNNNGG	6 cut(s)	60, 97, 169, 223, 249, 277
Bse1I	ACTGG	2 cut(s)	231, 308
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	7, 292
BseLI	CCNNNNNNNGG	6 cut(s)	60, 97, 169, 223, 249, 277
BseNI	ACTGG	2 cut(s)	231, 308
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	168, 284
Bsh1285I	CGRYCG	2 cut(s)	105, 282
BshFI	GGCC	2 cut(s)	6, 90
BsiEI	CGRYCG	2 cut(s)	105, 282
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	6 cut(s)	98, 224, 243, 271, 285, 311
BslI	CCNNNNNNNGG	6 cut(s)	60, 97, 169, 223, 249, 277
BsnI	GGCC	2 cut(s)	6, 90
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	2 cut(s)	6, 90
BspPI	GGATC	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	231, 308
BssECI	CCNNGG	2 cut(s)	7, 292
BssMI	GATC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	106
BstC8I	GCNNGC	4 cut(s)	58, 62, 171, 192
BstDSI	CCRYGG	1 cut(s)	292
BstEII	GGTNACC	2 cut(s)	226, 306
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMCI	CGRYCG	2 cut(s)	105, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 187
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	40
BstPI	GGTNACC	2 cut(s)	226, 306
BstSCI	CCNGG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	168, 284
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	2 cut(s)	6, 90
BtgI	CCRYGG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	4 cut(s)	58, 62, 171, 192
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	4, 89
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	37
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	59
Eco91I	GGTNACC	2 cut(s)	226, 306
EcoO65I	GGTNACC	2 cut(s)	226, 306
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	6
FaeI	CATG	1 cut(s)	40
FaiI	YATR	1 cut(s)	38
FatI	CATG	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	54, 182, 298
Fsp4HI	GCNGC	3 cut(s)	54, 182, 298
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	3 cut(s)	54, 182, 298
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	6, 90
HapII	CCGG	6 cut(s)	98, 224, 243, 271, 285, 311
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	2 cut(s)	34, 109
HindII	GTYRAC	2 cut(s)	34, 109
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	6 cut(s)	98, 224, 243, 271, 285, 311
HphI	GGTGA	2 cut(s)	220, 337
Hpy166II	GTNNAC	3 cut(s)	34, 109, 292
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	3 cut(s)	34, 109, 292
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 187
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	178, 313
Lsp1109I	GCAGC	2 cut(s)	168, 284
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	226, 306
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	138, 274
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	2 cut(s)	51, 187
MnlI	CCTC	2 cut(s)	55, 169
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	6 cut(s)	98, 224, 243, 271, 285, 311
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	70, 187
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	40
PciI	ACATGT	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	55, 183, 299
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PscI	ACATGT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	6
PspEI	GGTNACC	2 cut(s)	226, 306
PspGI	CCWGG	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	4, 89
PsuI	RGATCY	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	60
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SalI	GTCGAC	1 cut(s)	32
SatI	GCNGC	3 cut(s)	54, 182, 298
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	2 cut(s)	4, 89
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	33, 62, 81, 183, 240, 327
Sse9I	AATT	2 cut(s)	138, 274
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	33, 257
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	2 cut(s)	138, 274
TauI	GCSGC	1 cut(s)	56
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	181, 297
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.