Rw1G006780

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001116
Physical Location & Seq
Forward (+)
13973804 .. 13974961
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G006780.1

Sequence Viewer

Length: 1035 bp
ATGGTGGCAAATATTGGCGAACAGGGTTATGATCGAGCCGAAGAAGTGAAGCAATTCGACGACTCCAAGCTCGGAGTCAAAGGCCTCGTCGACTCAGGTCTCTCCTCCATCCCTCGAATCTTTATCCACCCGCCCGAAACATTACAGCAGTTGCAGTCTAAGACCCGACCCGACGCCCAACCATTCCCCACCATCGACCTCTCCGACCTCCATTCTGATCGCCGCTCTGCCATCGTCGACCAAGTCAGCGCCTTGTGCCGCAACTTTGGTTTCTTCCAGATCACCAACCATGGTATACCGTCGGTGGTAATGGACCGTACGATCGCCGCCGTCAAGGCCTTCCACGAGCAGCCGACGGAGGTCAAAGCGCAGTTCTACCGTAGAGGGAGGGGCCTAGGCGTGTCATATCTCTCCAACGTCGACCTGTACACGGCCAAAGCTGCCAGCTGGCGCGACACGCTTCAGGTGAGGCTCGGCCCCGTGCTGGCGGTCGCCGACGTACCGGAGGTTTGCAGGGACGAAATTGTTGCATGGAACCGGGAGATCCAACGGCTGGGAGAGGACTTGCTGGGGTTGATGAGTGAAGGGCTGGGATTGCGCACGGAGAAGCTGAAGGACATGACTTGTTTGAAAGGGAGGGTGATTTGGGCTTACTTCACTCACTGTGTGTTGACCATCCTGCTTCAAGATCATATTGGTGGGTTGCAGGTTAAGAACGATGGGGCTTGGGTGGATGTGAAACCTGTCCCCGGTGCTCTTGTGATTAATGTTGGTGATTTACTTCAGATTATTTCGAATGAGGAATACAAAAGCGTGGATCACCGGGTGTTGGCGAATCCACACCACGAGCCTCGTGTCTCAATAGCCGTGTTTTTGAACCCGAGCAATAGAGAGGGGGTGTTTGGTCCGTTGCCAGAGTTGGTCTCTCCGGAGAAGGCAGCTCTCTACAAAGAAATTAAGTTTTCGGAATTCATGACAAGGGTATTCAGCAAAGAATTGAGTGGCAAATCCTTAGTAAATTATTATAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

344

Amino Acids

38.43

Weight (kDa)

6.52

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 63 - 156 8.6e-19 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 223 - 294 3.9e-22 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
Acc16I TGCGCA 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 697
AccB7I CCANNNNNTGG 1 cut(s) 553
AccBSI CCGCTC 1 cut(s) 225
AccI GTMKAC 4 cut(s) 90, 237, 295, 420
AccII CGCG 1 cut(s) 453
AccIII TCCGGA 1 cut(s) 928
AciI CCGC 5 cut(s) 131, 223, 259, 327, 488
AclWI GGATC 2 cut(s) 538, 825
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 968
AcuI CTGAAG 3 cut(s) 446, 632, 767
AcyI GRCGYC 1 cut(s) 174
AdeI CACNNNGTG 2 cut(s) 667, 826
AfaI GTAC 3 cut(s) 319, 428, 501
AfiI CCNNNNNNNGG 5 cut(s) 430, 484, 553, 749, 829
AgsI TTSAA 3 cut(s) 631, 686, 877
AluBI AGCT 5 cut(s) 70, 440, 447, 610, 941
AluI AGCT 5 cut(s) 70, 440, 447, 610, 941
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 3 cut(s) 104, 862, 928
AlwI GGATC 2 cut(s) 538, 825
Ama87I CYCGRG 1 cut(s) 880
Aor13HI TCCGGA 1 cut(s) 928
AoxI GGCC 5 cut(s) 82, 336, 391, 432, 475
ApeKI GCWGC 3 cut(s) 349, 440, 938
ApoI RAATTY 1 cut(s) 968
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AseI ATTAAT 1 cut(s) 765
Asp700I GAANNNNTTC 1 cut(s) 53
AspA2I CCTAGG 1 cut(s) 394
AspLEI GCGC 4 cut(s) 251, 370, 453, 600
AspS9I GGNCC 4 cut(s) 313, 391, 476, 905
AsuC2I CCSGG 3 cut(s) 539, 750, 824
AsuHPI GGTGA 5 cut(s) 274, 478, 652, 785, 812
AsuII TTCGAA 1 cut(s) 794
AvaI CYCGRG 1 cut(s) 880
AvaII GGWCC 2 cut(s) 313, 905
AvrII CCTAGG 1 cut(s) 394
BauI CACGAG 3 cut(s) 344, 845, 852
Bbv12I GWGCWC 1 cut(s) 757
BbvI GCAGC 3 cut(s) 361, 427, 950
BccI CCATC 5 cut(s) 116, 200, 239, 683, 713
BceAI ACGGC 4 cut(s) 314, 447, 566, 851
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BcnI CCSGG 3 cut(s) 539, 750, 824
BcoDI GTCTC 3 cut(s) 104, 862, 928
BfaI CTAG 1 cut(s) 395
BfoI RGCGCY 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 697
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 6 cut(s) 223, 259, 327, 350, 441, 939
BlnI CCTAGG 1 cut(s) 394
BlsI GCNGC 6 cut(s) 224, 260, 328, 351, 442, 940
Bme1390I CCNGG 3 cut(s) 539, 750, 824
Bme18I GGWCC 2 cut(s) 313, 905
BmeT110I CYCGRG 1 cut(s) 880
BmgT120I GGNCC 4 cut(s) 313, 391, 476, 905
BmiI GGNNCC 3 cut(s) 392, 478, 536
BmrFI CCNGG 3 cut(s) 539, 750, 824
BoxI GACNNNNGTC 2 cut(s) 96, 359
BplI GAGNNNNNCTC 2 cut(s) 908, 940
Bpu14I TTCGAA 1 cut(s) 794
BpuMI CCSGG 3 cut(s) 539, 750, 824
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 2 cut(s) 104, 928
BsaJI CCNNGG 3 cut(s) 289, 394, 748
BsaWI WCCGGW 2 cut(s) 502, 928
Bsc4I CCNNNNNNNGG 5 cut(s) 430, 484, 553, 749, 829
BseAI TCCGGA 1 cut(s) 928
BseDI CCNNGG 3 cut(s) 289, 394, 748
BseGI GGATG 3 cut(s) 108, 675, 739
BseLI CCNNNNNNNGG 5 cut(s) 430, 484, 553, 749, 829
BseMII CTCAG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 361, 427, 950
BseYI CCCAGC 3 cut(s) 553, 568, 589
Bsh1236I CGCG 1 cut(s) 453
Bsh1285I CGRYCG 2 cut(s) 324, 492
BshFI GGCC 5 cut(s) 84, 338, 393, 434, 477
BsiEI CGRYCG 2 cut(s) 324, 492
BsiHKAI GWGCWC 1 cut(s) 757
BsiHKCI CYCGRG 1 cut(s) 880
BsiSI CCGG 5 cut(s) 503, 538, 750, 823, 929
BsiWI CGTACG 1 cut(s) 317
BslFI GGGAC 2 cut(s) 530, 731
BslI CCNNNNNNNGG 5 cut(s) 430, 484, 553, 749, 829
BsmAI GTCTC 3 cut(s) 104, 862, 928
BsmFI GGGAC 2 cut(s) 530, 731
BsnI GGCC 5 cut(s) 84, 338, 393, 434, 477
Bso31I GGTCTC 2 cut(s) 104, 928
BsoBI CYCGRG 1 cut(s) 880
Bsp119I TTCGAA 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 757
Bsp13I TCCGGA 1 cut(s) 928
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 7 cut(s) 31, 217, 279, 321, 543, 688, 817
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 5 cut(s) 131, 223, 259, 327, 488
BspANI GGCC 5 cut(s) 84, 338, 393, 434, 477
BspCNI CTCAG 1 cut(s) 107
BspEI TCCGGA 1 cut(s) 928
BspFNI CGCG 1 cut(s) 453
BspHI TCATGA 1 cut(s) 972
BspLI GGNNCC 3 cut(s) 392, 478, 536
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 2 cut(s) 538, 825
BspT104I TTCGAA 1 cut(s) 794
BspTNI GGTCTC 2 cut(s) 104, 928
BsrBI CCGCTC 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 426
BssECI CCNNGG 3 cut(s) 289, 394, 748
BssMI GATC 7 cut(s) 31, 217, 279, 321, 543, 688, 817
BssNAI GTATAC 1 cut(s) 296
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 3 cut(s) 344, 845, 852
BssT1I CCWWGG 2 cut(s) 289, 394
Bst1107I GTATAC 1 cut(s) 296
Bst2BI CACGAG 3 cut(s) 344, 845, 852
Bst4CI ACNGT 4 cut(s) 300, 317, 380, 665
BstACI GRCGYC 1 cut(s) 174
BstAUI TGTACA 1 cut(s) 426
BstBI TTCGAA 1 cut(s) 794
BstC8I GCNNGC 3 cut(s) 445, 449, 486
BstDEI CTNAG 3 cut(s) 94, 159, 1012
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 3 cut(s) 108, 675, 739
BstFNI CGCG 1 cut(s) 453
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 4 cut(s) 251, 370, 453, 600
BstKTI GATC 7 cut(s) 34, 220, 282, 324, 546, 691, 820
BstMAI GTCTC 3 cut(s) 104, 862, 928
BstMBI GATC 7 cut(s) 31, 217, 279, 321, 543, 688, 817
BstMCI CGRYCG 2 cut(s) 324, 492
BstMWI GCNNNNNNNGC 5 cut(s) 255, 335, 440, 457, 595
BstPAI GACNNNNGTC 2 cut(s) 96, 359
BstSCI CCNGG 3 cut(s) 537, 748, 822
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 361, 427, 950
BstX2I RGATCY 1 cut(s) 543
BstYI RGATCY 1 cut(s) 543
BstZ17I GTATAC 1 cut(s) 296
BsuRI GGCC 5 cut(s) 84, 338, 393, 434, 477
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 3 cut(s) 108, 675, 739
BtsIMutI CAGTG 1 cut(s) 661
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 3 cut(s) 445, 449, 486
CciI TCATGA 1 cut(s) 972
CfoI GCGC 4 cut(s) 251, 370, 453, 600
Cfr13I GGNCC 4 cut(s) 313, 391, 476, 905
CseI GACGC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 318, 427, 500
CviAII CATG 4 cut(s) 290, 531, 619, 973
CviQI GTAC 3 cut(s) 318, 427, 500
DdeI CTNAG 3 cut(s) 94, 159, 1012
DpnI GATC 7 cut(s) 33, 219, 281, 323, 545, 690, 819
DpnII GATC 7 cut(s) 31, 217, 279, 321, 543, 688, 817
DraIII CACNNNGTG 2 cut(s) 667, 826
EaeI YGGCCR 1 cut(s) 432
Eco130I CCWWGG 2 cut(s) 289, 394
Eco147I AGGCCT 2 cut(s) 84, 338
Eco31I GGTCTC 2 cut(s) 104, 928
Eco47I GGWCC 2 cut(s) 313, 905
Eco57I CTGAAG 3 cut(s) 446, 632, 767
Eco88I CYCGRG 1 cut(s) 880
EcoO109I RGGNCCY 1 cut(s) 391
EcoRI GAATTC 1 cut(s) 968
EcoT14I CCWWGG 2 cut(s) 289, 394
ErhI CCWWGG 2 cut(s) 289, 394
FaeI CATG 4 cut(s) 293, 534, 622, 976
FaiI YATR 9 cut(s) 30, 291, 296, 406, 532, 620, 693, 974, 1026
FaqI GGGAC 2 cut(s) 530, 731
FatI CATG 4 cut(s) 289, 530, 618, 972
FauI CCCGC 1 cut(s) 138
FblI GTMKAC 4 cut(s) 90, 237, 295, 420
Fnu4HI GCNGC 6 cut(s) 223, 259, 327, 350, 441, 939
FokI GGATG 3 cut(s) 95, 662, 746
Fsp4HI GCNGC 6 cut(s) 223, 259, 327, 350, 441, 939
FspBI CTAG 1 cut(s) 395
FspI TGCGCA 1 cut(s) 599
GlaI GCGC 4 cut(s) 250, 369, 452, 599
GluI GCNGC 6 cut(s) 223, 259, 327, 350, 441, 939
GsaI CCCAGC 3 cut(s) 557, 572, 593
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 5 cut(s) 84, 338, 393, 434, 477
HapII CCGG 5 cut(s) 503, 538, 750, 823, 929
HgaI GACGC 1 cut(s) 182
HhaI GCGC 4 cut(s) 251, 370, 453, 600
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 4 cut(s) 293, 534, 622, 976
Hin6I GCGC 4 cut(s) 249, 368, 451, 598
HinP1I GCGC 4 cut(s) 249, 368, 451, 598
HincII GTYRAC 4 cut(s) 91, 238, 421, 672
HindII GTYRAC 4 cut(s) 91, 238, 421, 672
HinfI GANTC 5 cut(s) 62, 75, 92, 117, 835
HpaII CCGG 5 cut(s) 503, 538, 750, 823, 929
HphI GGTGA 5 cut(s) 274, 478, 652, 785, 812
Hpy166II GTNNAC 6 cut(s) 91, 238, 296, 421, 429, 672
Hpy188I TCNGA 5 cut(s) 74, 205, 217, 786, 967
Hpy188III TCNNGA 4 cut(s) 277, 686, 929, 973
Hpy8I GTNNAC 6 cut(s) 91, 238, 296, 421, 429, 672
Hpy99I CGWCG 8 cut(s) 62, 92, 176, 239, 304, 358, 422, 500
HpyAV CCTTC 4 cut(s) 349, 578, 607, 928
HpyCH4III ACNGT 4 cut(s) 300, 317, 380, 665
HpyCH4IV ACGT 2 cut(s) 417, 498
HpyCH4V TGCA 4 cut(s) 154, 513, 530, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 255, 335, 440, 457, 595
HpyF3I CTNAG 3 cut(s) 94, 159, 1012
HpySE526I ACGT 2 cut(s) 417, 498
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 4 cut(s) 293, 534, 622, 976
HspAI GCGC 4 cut(s) 249, 368, 451, 598
Kpn2I TCCGGA 1 cut(s) 928
Kzo9I GATC 7 cut(s) 31, 217, 279, 321, 543, 688, 817
Lsp1109I GCAGC 3 cut(s) 361, 427, 950
MaeI CTAG 1 cut(s) 395
MaeII ACGT 2 cut(s) 417, 498
MalI GATC 7 cut(s) 33, 219, 281, 323, 545, 690, 819
MbiI CCGCTC 1 cut(s) 225
MboI GATC 7 cut(s) 31, 217, 279, 321, 543, 688, 817
MboII GAAGA 2 cut(s) 53, 265
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 1 cut(s) 757
MluCI AATT 6 cut(s) 53, 522, 954, 968, 995, 1018
MlyI GAGTC 3 cut(s) 56, 84, 86
MmeI TCCRAC 3 cut(s) 228, 438, 571
MroI TCCGGA 1 cut(s) 928
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 3 cut(s) 711, 765, 957
MslI CAYNNNNRTG 1 cut(s) 696
MspA1I CMGCKG 1 cut(s) 447
MspI CCGG 5 cut(s) 503, 538, 750, 823, 929
MspR9I CCNGG 3 cut(s) 539, 750, 824
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 5 cut(s) 255, 335, 440, 457, 595
NciI CCSGG 3 cut(s) 539, 750, 824
NcoI CCATGG 1 cut(s) 289
NdeII GATC 7 cut(s) 31, 217, 279, 321, 543, 688, 817
NlaIII CATG 4 cut(s) 293, 534, 622, 976
NlaIV GGNNCC 3 cut(s) 392, 478, 536
NmeAIII GCCGAG 1 cut(s) 453
NsbI TGCGCA 1 cut(s) 599
NspV TTCGAA 1 cut(s) 794
PagI TCATGA 1 cut(s) 972
PceI AGGCCT 2 cut(s) 84, 338
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 2 cut(s) 117, 835
Pfl23II CGTACG 1 cut(s) 317
PflFI GACNNNGTC 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 6 cut(s) 224, 260, 328, 351, 442, 940
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 3 cut(s) 56, 83, 86
PpsI GAGTC 3 cut(s) 56, 83, 86
PshAI GACNNNNGTC 2 cut(s) 96, 359
PshBI ATTAAT 1 cut(s) 765
PsiI TTATAA 1 cut(s) 1026
PspFI CCCAGC 3 cut(s) 553, 568, 589
PspLI CGTACG 1 cut(s) 317
PspN4I GGNNCC 3 cut(s) 392, 478, 536
PspPI GGNCC 4 cut(s) 313, 391, 476, 905
PsuI RGATCY 1 cut(s) 543
PsyI GACNNNGTC 1 cut(s) 242
PvuI CGATCG 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 447
RsaI GTAC 3 cut(s) 319, 428, 501
RsaNI GTAC 3 cut(s) 318, 427, 500
RseI CAYNNNNRTG 1 cut(s) 696
SalI GTCGAC 3 cut(s) 89, 236, 419
SaqAI TTAA 3 cut(s) 711, 765, 957
SatI GCNGC 6 cut(s) 223, 259, 327, 350, 441, 939
Sau3AI GATC 7 cut(s) 31, 217, 279, 321, 543, 688, 817
Sau96I GGNCC 4 cut(s) 313, 391, 476, 905
SchI GAGTC 3 cut(s) 56, 84, 86
ScrFI CCNGG 3 cut(s) 539, 750, 824
SduI GDGCHC 1 cut(s) 757
SfuI TTCGAA 1 cut(s) 794
SinI GGWCC 2 cut(s) 313, 905
SmiMI CAYNNNNRTG 1 cut(s) 696
Sse9I AATT 6 cut(s) 53, 522, 954, 968, 995, 1018
SseBI AGGCCT 2 cut(s) 84, 338
SsiI CCGC 5 cut(s) 131, 223, 259, 327, 488
SspI AATATT 1 cut(s) 13
SspMI CTAG 1 cut(s) 395
StuI AGGCCT 2 cut(s) 84, 338
StyD4I CCNGG 3 cut(s) 537, 748, 822
StyI CCWWGG 2 cut(s) 289, 394
TaaI ACNGT 4 cut(s) 300, 317, 380, 665
TaiI ACGT 2 cut(s) 420, 501
TaqI TCGA 8 cut(s) 34, 57, 90, 115, 195, 237, 420, 794
TasI AATT 6 cut(s) 53, 522, 954, 968, 995, 1018
TatI WGTACW 1 cut(s) 426
TauI GCSGC 3 cut(s) 225, 261, 329
TfiI GAWTC 2 cut(s) 117, 835
Tru1I TTAA 3 cut(s) 711, 765, 957
Tru9I TTAA 3 cut(s) 711, 765, 957
TscAI CASTG 1 cut(s) 668
TseI GCWGC 3 cut(s) 349, 440, 938
TspDTI ATGAA 1 cut(s) 961
TspGWI ACGGA 3 cut(s) 371, 617, 897
TspRI CASTG 1 cut(s) 668
Tth111I GACNNNGTC 1 cut(s) 242
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 2 cut(s) 313, 905
VspI ATTAAT 1 cut(s) 765
XapI RAATTY 1 cut(s) 968
XmaJI CCTAGG 1 cut(s) 394
XmiI GTMKAC 4 cut(s) 90, 237, 295, 420
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.