RLG00000005942

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001116
Physical Location & Seq
Forward (+)
2953515 .. 2954466
952 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005942

Sequence Viewer

Length: 492 bp
ATGGCGGCAAATAGTCCCTTGATCGGCGAACAGGGTTATGATCGAGCTGAAGAAGTGAAGCAATTCGACGAGTCCAAGCTCGGAGTCAAAGGCCTCGTCGACTCGGGTCTCTCCTCCATCCCTCGAATCTTTATCCACCCGCCTGAAACATTACAGCAATTGCAGCCGACGACCCGAGCCGACGCCCAATCAATCCCCACCATCGACCTCTCCGATCGCCGCTCCTCAATCGTCCACCAAATTATTTCGAACGAGGAATACAAAAGCGTGGATCACCGGGTGTTGGCGAATCCACACCACAAGGCGCGTCTCTCAATAGCCGTGCTTTTGAATCAGAGCAATAGAGAGGGCGTGTTTGGTCCATTGCCGGAGCTGGTCTCGCCGGAGAAGCCAGCTCTCTACAAAGAGTTCAAGTTCTCGGAATTCCTGATGAGGTTCTTCCTGAAAGAATTGAATGACGAATCTTTGGTGAACTACTTTAAGCTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

164

Amino Acids

18.5

Weight (kDa)

6.07

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 222
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 307
AciI CCGC 3 cut(s) 5, 140, 220
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 23, 283
AgsI TTSAA 3 cut(s) 331, 412, 454
AluBI AGCT 5 cut(s) 47, 79, 373, 395, 484
AluI AGCT 5 cut(s) 47, 79, 373, 395, 484
Alw26I GTCTC 3 cut(s) 113, 314, 382
AlwI GGATC 1 cut(s) 279
Ama87I CYCGRG 2 cut(s) 103, 174
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 163, 484
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 266, 481
AsuII TTCGAA 1 cut(s) 248
AvaI CYCGRG 2 cut(s) 103, 174
AvaII GGWCC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 175, 471
BccI CCATC 2 cut(s) 125, 209
BceAI ACGGC 1 cut(s) 305
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 3 cut(s) 113, 314, 382
BisI GCNGC 4 cut(s) 6, 164, 220, 485
BlsI GCNGC 4 cut(s) 7, 165, 221, 486
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 359
BmeT110I CYCGRG 2 cut(s) 103, 174
BmgT120I GGNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 278
BoxI GACNNNNGTC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 362, 394
Bpu14I TTCGAA 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 2 cut(s) 113, 382
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 283
Bse3DI GCAATG 1 cut(s) 362
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 23, 283
BseMI GCAATG 1 cut(s) 362
BseRI GAGGAG 2 cut(s) 103, 214
BseXI GCAGC 2 cut(s) 175, 471
BsgI GTGCAG 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 307
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 217
BsiHKCI CYCGRG 2 cut(s) 103, 174
BsiSI CCGG 3 cut(s) 277, 368, 383
BslI CCNNNNNNNGG 2 cut(s) 23, 283
BsmAI GTCTC 3 cut(s) 113, 314, 382
BsmBI CGTCTC 1 cut(s) 314
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 2 cut(s) 113, 382
BsoBI CYCGRG 2 cut(s) 103, 174
Bsp119I TTCGAA 1 cut(s) 248
Bsp143I GATC 4 cut(s) 21, 40, 214, 271
BspACI CCGC 3 cut(s) 5, 140, 220
BspANI GGCC 1 cut(s) 93
BspFNI CGCG 1 cut(s) 307
BspPI GGATC 1 cut(s) 279
BspT104I TTCGAA 1 cut(s) 248
BspTNI GGTCTC 2 cut(s) 113, 382
BsrBI CCGCTC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 362
BssMI GATC 4 cut(s) 21, 40, 214, 271
BssNI GRCGYC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 183
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 393
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 24, 43, 217, 274
BstMAI GTCTC 3 cut(s) 113, 314, 382
BstMBI GATC 4 cut(s) 21, 40, 214, 271
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 3 cut(s) 163, 379, 388
BstPAI GACNNNNGTC 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 276
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 175, 471
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 359
CseI GACGC 2 cut(s) 191, 296
DpnI GATC 4 cut(s) 23, 42, 216, 273
DpnII GATC 4 cut(s) 21, 40, 214, 271
DraIII CACNNNGTG 1 cut(s) 280
Eco147I AGGCCT 1 cut(s) 93
Eco31I GGTCTC 2 cut(s) 113, 382
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 2 cut(s) 103, 174
EcoRI GAATTC 1 cut(s) 422
Esp3I CGTCTC 1 cut(s) 314
FaiI YATR 1 cut(s) 39
FauI CCCGC 1 cut(s) 147
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 4 cut(s) 6, 164, 220, 485
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 4 cut(s) 6, 164, 220, 485
GlaI GCGC 1 cut(s) 306
GluI GCNGC 4 cut(s) 6, 164, 220, 485
HaeIII GGCC 1 cut(s) 93
HapII CCGG 3 cut(s) 277, 368, 383
HgaI GACGC 2 cut(s) 191, 296
HhaI GCGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 183
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 7 cut(s) 71, 84, 101, 126, 289, 331, 461
HpaII CCGG 3 cut(s) 277, 368, 383
HphI GGTGA 2 cut(s) 266, 481
Hpy166II GTNNAC 3 cut(s) 100, 235, 472
Hpy188I TCNGA 4 cut(s) 83, 214, 336, 421
Hpy188III TCNNGA 2 cut(s) 427, 442
Hpy8I GTNNAC 3 cut(s) 100, 235, 472
Hpy99I CGWCG 4 cut(s) 71, 101, 172, 185
HpyCH4V TGCA 2 cut(s) 163, 487
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 379, 388
Hsp92I GRCGYC 1 cut(s) 183
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 4 cut(s) 21, 40, 214, 271
LmnI GCTCC 2 cut(s) 227, 370
LpnPI CCDG 9 cut(s) 17, 156, 290, 359, 381, 396, 405, 440, 455
Lsp1109I GCAGC 2 cut(s) 175, 471
MalI GATC 4 cut(s) 23, 42, 216, 273
MbiI CCGCTC 1 cut(s) 222
MboI GATC 4 cut(s) 21, 40, 214, 271
MboII GAAGA 2 cut(s) 62, 430
MfeI CAATTG 1 cut(s) 158
MluCI AATT 5 cut(s) 62, 158, 240, 422, 449
MlyI GAGTC 3 cut(s) 80, 93, 95
MnlI CCTC 8 cut(s) 104, 124, 132, 218, 235, 247, 340, 426
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 480
MspI CCGG 3 cut(s) 277, 368, 383
MspR9I CCNGG 1 cut(s) 278
MunI CAATTG 1 cut(s) 158
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 3 cut(s) 163, 379, 388
NciI CCSGG 1 cut(s) 278
NdeII GATC 4 cut(s) 21, 40, 214, 271
NspV TTCGAA 1 cut(s) 248
PceI AGGCCT 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 4 cut(s) 126, 289, 331, 461
PkrI GCNGC 4 cut(s) 7, 165, 221, 486
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 3 cut(s) 79, 92, 95
PpsI GAGTC 3 cut(s) 79, 92, 95
PshAI GACNNNNGTC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 359
PsrI GAACNNNNNNTAC 2 cut(s) 242, 274
PvuI CGATCG 1 cut(s) 217
SalI GTCGAC 1 cut(s) 98
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 4 cut(s) 6, 164, 220, 485
Sau3AI GATC 4 cut(s) 21, 40, 214, 271
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 3 cut(s) 80, 93, 95
ScrFI CCNGG 1 cut(s) 278
SetI ASST 7 cut(s) 49, 81, 210, 375, 397, 437, 486
SfuI TTCGAA 1 cut(s) 248
SinI GGWCC 1 cut(s) 359
Sse9I AATT 5 cut(s) 62, 158, 240, 422, 449
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 3 cut(s) 5, 140, 220
StuI AGGCCT 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 276
TaqI TCGA 6 cut(s) 43, 66, 99, 124, 204, 248
TasI AATT 5 cut(s) 62, 158, 240, 422, 449
TauI GCSGC 2 cut(s) 8, 222
TfiI GAWTC 4 cut(s) 126, 289, 331, 461
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseI GCWGC 2 cut(s) 163, 484
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.