pycom16g01800

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001116
Physical Location & Seq
Reverse (-)
1100567 .. 1102064
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01800.2

Sequence Viewer

Length: 1101 bp
ATGGCGGCGACCACCGTGATTGGCGAACATGACTACGACAGAGCTCAAGAAATCAAGGATTTCGACAACACAAAACTCGGAGTCAAAGGCCTCGTTGACTCTGGTCTCACCTCCATCCCCCGCTTCTTCATCCACCCACCCGAAACTCTACCCGACGTTCGACCCGATACAAAACCCGATTCCCAACAAACACCGATCCCCACCATCGACCTCGCGGGCCTGCACACCCATCACCGTTCATCCATCGTTGACCAAATCAACCACGCGTGTCGAAAGTTCGGTTTCTTCCAGGTCATAAACCACGGAATCCCATCGGCAGCTCTGGACCGTACGATCTCAGCCATCAAGGCCTTTCACGAGCAGCCGGCGGAGGACAAAACACGGGTCTACCGTAGGGAGATTGTCACGGGCGTACGGTATATCTCCAACTTCGACCTCTACAGCTCAAAAGCCGCCAGCTGGAGGGACACGCTAACAATTAGGTTGGGCCCCACGCCGGCGAATCCTCTAGAGGTGCCTGAGATCTGTCGGGATGCGGCTGCTGAGTGGGATCAGGAGATCCAACGGCTGGGAGGTGTGCTGATGGAGCTGGTGAGCGAAGGGCTGGGATTGAATGCGTGGAGATTGAGGAAGATGACGTGTCTGGAAGCGAGGGTGATGGTGGGCAATTACTACCCCTACTGCCCGCAGCCTGATCTGACGGTGGGGATTGCTTCTCATTCTGACCCGGGAGTTTTGACCGTGCTGCTTCAGGACCAAACGGGTGGATTGCAGGTTAAATACGGTGAGGGTTGGCTGGATGTGAAACCGGTCCCCGGTGCTCTTGTTATCAACGTCGGGGATTTGCTTCAGATTATGTCCAACGGAGAATACAAAAGCGTAGATCATCGGGTGTTAGCTAACCCAAAACGCGAAGCACGCGTGGCAATTGCAGTGTTCTTCAACCCAAGTAATACAGAGGATACGTATGGTCCACTATCGGAGATGGTCTCGCCGGAGAAACCTGCACTTTACCAGCAATTTACGTTGTCAGAATTGATGCAAAGGTTCTTCAATAAAGGATTGGATGGCAAAGCTTTGGTAAATCACTTTAGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

367

Amino Acids

40.77

Weight (kDa)

6.01

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 763, 1012
AccB1I GGYRCC 1 cut(s) 514
AccB7I CCANNNNNTGG 1 cut(s) 568
AccI GTMKAC 1 cut(s) 387
AccII CGCG 4 cut(s) 215, 266, 912, 921
AciI CCGC 7 cut(s) 5, 121, 215, 368, 453, 536, 686
AclWI GGATC 3 cut(s) 190, 553, 558
AcuI CTGAAG 2 cut(s) 734, 833
AfaI GTAC 2 cut(s) 331, 414
AfiI CCNNNNNNNGG 5 cut(s) 459, 462, 496, 568, 815
AflIII ACRYGT 3 cut(s) 264, 638, 919
AgeI ACCGGT 1 cut(s) 808
AgsI TTSAA 3 cut(s) 613, 943, 1054
AjiI CACGTC 1 cut(s) 639
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 7 cut(s) 44, 320, 444, 459, 589, 899, 1076
AluI AGCT 7 cut(s) 44, 320, 444, 459, 589, 899, 1076
Alw21I GWGCWC 2 cut(s) 46, 823
Alw26I GTCTC 2 cut(s) 110, 994
AlwI GGATC 3 cut(s) 190, 553, 558
Ama87I CYCGRG 1 cut(s) 727
AoxI GGCC 4 cut(s) 88, 217, 348, 487
ApaI GGGCCC 1 cut(s) 491
ApeKI GCWGC 5 cut(s) 317, 361, 539, 688, 745
ArsI GACNNNNNNTTYG 2 cut(s) 369, 401
AsiGI ACCGGT 1 cut(s) 808
AspS9I GGNCC 7 cut(s) 217, 325, 487, 488, 754, 811, 971
AsuC2I CCSGG 3 cut(s) 728, 729, 816
AsuHPI GGTGA 5 cut(s) 100, 224, 604, 667, 797
AvaI CYCGRG 1 cut(s) 727
AvaII GGWCC 4 cut(s) 325, 754, 811, 971
BaeGI GKGCMC 1 cut(s) 491
BanI GGYRCC 1 cut(s) 514
BanII GRGCYC 2 cut(s) 46, 491
BauI CACGAG 1 cut(s) 356
Bbv12I GWGCWC 2 cut(s) 46, 823
BbvI GCAGC 5 cut(s) 329, 373, 526, 700, 732
BceAI ACGGC 1 cut(s) 581
BciT130I CCWGG 1 cut(s) 290
BciVI GTATCC 1 cut(s) 955
BcnI CCSGG 3 cut(s) 728, 729, 816
BcoDI GTCTC 2 cut(s) 110, 994
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 1 cut(s) 439
BfuAI ACCTGC 2 cut(s) 763, 1012
BfuI GTATCC 1 cut(s) 955
BglI GCCNNNNNGGC 1 cut(s) 347
BglII AGATCT 1 cut(s) 522
BisI GCNGC 8 cut(s) 6, 318, 362, 453, 537, 540, 689, 746
BlsI GCNGC 8 cut(s) 7, 319, 363, 454, 538, 541, 690, 747
Bme1390I CCNGG 4 cut(s) 290, 728, 729, 816
Bme18I GGWCC 4 cut(s) 325, 754, 811, 971
BmeT110I CYCGRG 1 cut(s) 727
BmgBI CACGTC 1 cut(s) 639
BmgT120I GGNCC 7 cut(s) 217, 325, 487, 488, 754, 811, 971
BmiI GGNNCC 4 cut(s) 489, 490, 516, 813
BmrFI CCNGG 4 cut(s) 290, 728, 729, 816
BmsI GCATC 2 cut(s) 523, 1029
BoxI GACNNNNGTC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 974, 1006
BpmI CTGGAG 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 30
BpuMI CCSGG 3 cut(s) 728, 729, 816
BsaAI YACGTR 1 cut(s) 966
BsaI GGTCTC 2 cut(s) 110, 994
BsaJI CCNNGG 3 cut(s) 301, 727, 814
BsaWI WCCGGW 1 cut(s) 808
Bsc4I CCNNNNNNNGG 5 cut(s) 459, 462, 496, 568, 815
Bse118I RCCGGY 3 cut(s) 364, 496, 808
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 3 cut(s) 301, 727, 814
BseGI GGATG 6 cut(s) 114, 129, 239, 538, 805, 1072
BseLI CCNNNNNNNGG 5 cut(s) 459, 462, 496, 568, 815
BseMII CTCAG 3 cut(s) 351, 510, 534
BseSI GKGCMC 1 cut(s) 491
BseXI GCAGC 5 cut(s) 329, 373, 526, 700, 732
BseYI CCCAGC 2 cut(s) 568, 604
BsgI GTGCAG 2 cut(s) 206, 990
Bsh1236I CGCG 4 cut(s) 215, 266, 912, 921
BshFI GGCC 4 cut(s) 90, 219, 350, 489
BshNI GGYRCC 1 cut(s) 514
BshTI ACCGGT 1 cut(s) 808
BsiHKAI GWGCWC 2 cut(s) 46, 823
BsiHKCI CYCGRG 1 cut(s) 727
BsiSI CCGG 6 cut(s) 365, 497, 728, 809, 816, 995
BsiWI CGTACG 2 cut(s) 329, 412
BslFI GGGAC 2 cut(s) 479, 797
BslI CCNNNNNNNGG 5 cut(s) 459, 462, 496, 568, 815
BsmAI GTCTC 2 cut(s) 110, 994
BsmFI GGGAC 2 cut(s) 479, 797
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 4 cut(s) 90, 219, 350, 489
Bso31I GGTCTC 2 cut(s) 110, 994
BsoBI CYCGRG 1 cut(s) 727
Bsp120I GGGCCC 1 cut(s) 487
Bsp1286I GDGCHC 3 cut(s) 46, 491, 823
Bsp143I GATC 7 cut(s) 195, 333, 522, 550, 558, 694, 883
BspACI CCGC 7 cut(s) 5, 121, 215, 368, 453, 536, 686
BspANI GGCC 4 cut(s) 90, 219, 350, 489
BspCNI CTCAG 3 cut(s) 350, 511, 535
BspFNI CGCG 4 cut(s) 215, 266, 912, 921
BspLI GGNNCC 4 cut(s) 489, 490, 516, 813
BspMI ACCTGC 2 cut(s) 763, 1012
BspPI GGATC 3 cut(s) 190, 553, 558
BspT107I GGYRCC 1 cut(s) 514
BspTNI GGTCTC 2 cut(s) 110, 994
BsrFI RCCGGY 3 cut(s) 364, 496, 808
BssAI RCCGGY 3 cut(s) 364, 496, 808
BssECI CCNNGG 3 cut(s) 301, 727, 814
BssMI GATC 7 cut(s) 195, 333, 522, 550, 558, 694, 883
BssSI CACGAG 1 cut(s) 356
Bst2BI CACGAG 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 8 cut(s) 16, 236, 329, 392, 417, 703, 742, 785
BstBAI YACGTR 1 cut(s) 966
BstC8I GCNNGC 7 cut(s) 217, 221, 366, 457, 498, 686, 919
BstDEI CTNAG 3 cut(s) 337, 519, 543
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 6 cut(s) 114, 129, 239, 538, 805, 1072
BstFNI CGCG 4 cut(s) 215, 266, 912, 921
BstKTI GATC 7 cut(s) 198, 336, 525, 553, 561, 697, 886
BstMAI GTCTC 2 cut(s) 110, 994
BstMBI GATC 7 cut(s) 195, 333, 522, 550, 558, 694, 883
BstMWI GCNNNNNNNGC 4 cut(s) 347, 586, 918, 923
BstNI CCWGG 1 cut(s) 290
BstPAI GACNNNNGTC 1 cut(s) 102
BstSCI CCNGG 4 cut(s) 288, 726, 727, 814
BstSFI CTRYAG 1 cut(s) 439
BstSLI GKGCMC 1 cut(s) 491
BstSNI TACGTA 1 cut(s) 966
BstUI CGCG 4 cut(s) 215, 266, 912, 921
BstV1I GCAGC 5 cut(s) 329, 373, 526, 700, 732
BstX2I RGATCY 2 cut(s) 522, 558
BstXI CCANNNNNNTGG 1 cut(s) 764
BstYI RGATCY 2 cut(s) 522, 558
BsuI GTATCC 1 cut(s) 955
BsuRI GGCC 4 cut(s) 90, 219, 350, 489
BtgI CCRYGG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 639
BtsCI GGATG 6 cut(s) 114, 129, 239, 538, 805, 1072
BtsI GCAGTG 1 cut(s) 939
BtsIMutI CAGTG 1 cut(s) 939
BveI ACCTGC 2 cut(s) 763, 1012
Cac8I GCNNGC 7 cut(s) 217, 221, 366, 457, 498, 686, 919
Cfr10I RCCGGY 3 cut(s) 364, 496, 808
Cfr13I GGNCC 7 cut(s) 217, 325, 487, 488, 754, 811, 971
Cfr9I CCCGGG 1 cut(s) 727
Csp6I GTAC 2 cut(s) 330, 413
CspAI ACCGGT 1 cut(s) 808
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 1 cut(s) 29
CviQI GTAC 2 cut(s) 330, 413
DdeI CTNAG 3 cut(s) 337, 519, 543
DpnI GATC 7 cut(s) 197, 335, 524, 552, 560, 696, 885
DpnII GATC 7 cut(s) 195, 333, 522, 550, 558, 694, 883
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 44
Eco105I TACGTA 1 cut(s) 966
Eco147I AGGCCT 2 cut(s) 90, 350
Eco24I GRGCYC 2 cut(s) 46, 491
Eco31I GGTCTC 2 cut(s) 110, 994
Eco47I GGWCC 4 cut(s) 325, 754, 811, 971
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 734, 833
Eco88I CYCGRG 1 cut(s) 727
EcoICRI GAGCTC 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 46, 491
FaeI CATG 1 cut(s) 32
FaiI YATR 5 cut(s) 30, 296, 420, 857, 969
FaqI GGGAC 2 cut(s) 479, 797
FatI CATG 1 cut(s) 28
FauI CCCGC 3 cut(s) 128, 208, 693
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 8 cut(s) 6, 318, 362, 453, 537, 540, 689, 746
FokI GGATG 6 cut(s) 101, 116, 226, 545, 812, 1079
FriOI GRGCYC 2 cut(s) 46, 491
Fsp4HI GCNGC 8 cut(s) 6, 318, 362, 453, 537, 540, 689, 746
FspBI CTAG 1 cut(s) 509
GluI GCNGC 8 cut(s) 6, 318, 362, 453, 537, 540, 689, 746
GsaI CCCAGC 2 cut(s) 572, 608
GsuI CTGGAG 1 cut(s) 481
HaeIII GGCC 4 cut(s) 90, 219, 350, 489
HapII CCGG 6 cut(s) 365, 497, 728, 809, 816, 995
Hin1II CATG 1 cut(s) 32
HincII GTYRAC 2 cut(s) 97, 250
HindII GTYRAC 2 cut(s) 97, 250
HindIII AAGCTT 1 cut(s) 1074
HinfI GANTC 5 cut(s) 81, 98, 179, 306, 502
HpaII CCGG 6 cut(s) 365, 497, 728, 809, 816, 995
HphI GGTGA 5 cut(s) 100, 224, 604, 667, 797
Hpy166II GTNNAC 4 cut(s) 97, 250, 388, 974
Hpy188I TCNGA 6 cut(s) 80, 699, 724, 852, 982, 1033
Hpy188III TCNNGA 8 cut(s) 47, 323, 356, 509, 530, 554, 644, 752
Hpy8I GTNNAC 4 cut(s) 97, 250, 388, 974
Hpy99I CGWCG 2 cut(s) 158, 839
HpyAV CCTTC 1 cut(s) 593
HpyCH4III ACNGT 8 cut(s) 16, 236, 329, 392, 417, 703, 742, 785
HpyCH4IV ACGT 5 cut(s) 156, 638, 834, 965, 1025
HpyCH4V TGCA 5 cut(s) 223, 772, 932, 1007, 1042
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 586, 918, 923
HpyF3I CTNAG 3 cut(s) 337, 519, 543
HpySE526I ACGT 5 cut(s) 156, 638, 834, 965, 1025
Hsp92II CATG 1 cut(s) 32
KroI GCCGGC 2 cut(s) 364, 496
KroNI GCCGGC 2 cut(s) 366, 498
Kzo9I GATC 7 cut(s) 195, 333, 522, 550, 558, 694, 883
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 5 cut(s) 329, 373, 526, 700, 732
LweI GCATC 2 cut(s) 523, 1029
MaeI CTAG 1 cut(s) 509
MaeII ACGT 5 cut(s) 156, 638, 834, 965, 1025
MaeIII GTNAC 1 cut(s) 403
MalI GATC 7 cut(s) 197, 335, 524, 552, 560, 696, 885
MboI GATC 7 cut(s) 195, 333, 522, 550, 558, 694, 883
MboII GAAGA 5 cut(s) 118, 277, 643, 931, 1042
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 2 cut(s) 522, 558
MhlI GDGCHC 3 cut(s) 46, 491, 823
MluCI AATT 5 cut(s) 477, 667, 927, 1019, 1034
MluI ACGCGT 2 cut(s) 264, 919
MlyI GAGTC 2 cut(s) 90, 92
MmeI TCCRAC 3 cut(s) 450, 586, 885
MreI CGCCGGCG 1 cut(s) 496
MroNI GCCGGC 2 cut(s) 364, 496
MseI TTAA 1 cut(s) 777
MspA1I CMGCKG 1 cut(s) 459
MspI CCGG 6 cut(s) 365, 497, 728, 809, 816, 995
MspR9I CCNGG 4 cut(s) 290, 728, 729, 816
MunI CAATTG 1 cut(s) 927
Mva1269I GAATGC 1 cut(s) 619
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 4 cut(s) 215, 266, 912, 921
MwoI GCNNNNNNNGC 4 cut(s) 347, 586, 918, 923
NaeI GCCGGC 2 cut(s) 366, 498
NciI CCSGG 3 cut(s) 728, 729, 816
NdeII GATC 7 cut(s) 195, 333, 522, 550, 558, 694, 883
NgoMIV GCCGGC 2 cut(s) 364, 496
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 4 cut(s) 489, 490, 516, 813
NmuCI GTSAC 1 cut(s) 403
PceI AGGCCT 2 cut(s) 90, 350
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 388
PctI GAATGC 1 cut(s) 619
PdiI GCCGGC 2 cut(s) 366, 498
PfeI GAWTC 3 cut(s) 179, 306, 502
Pfl23II CGTACG 2 cut(s) 329, 412
PflMI CCANNNNNTGG 1 cut(s) 568
PinAI ACCGGT 1 cut(s) 808
PkrI GCNGC 8 cut(s) 7, 319, 363, 454, 538, 541, 690, 747
PleI GAGTC 2 cut(s) 89, 92
PpsI GAGTC 2 cut(s) 89, 92
Ppu21I YACGTR 1 cut(s) 966
PshAI GACNNNNGTC 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 288
PspFI CCCAGC 2 cut(s) 568, 604
PspGI CCWGG 1 cut(s) 288
PspLI CGTACG 2 cut(s) 329, 412
PspN4I GGNNCC 4 cut(s) 489, 490, 516, 813
PspOMI GGGCCC 1 cut(s) 487
PspPI GGNCC 7 cut(s) 217, 325, 487, 488, 754, 811, 971
PsuI RGATCY 2 cut(s) 522, 558
PvuII CAGCTG 1 cut(s) 459
RsaI GTAC 2 cut(s) 331, 414
RsaNI GTAC 2 cut(s) 330, 413
SacI GAGCTC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 8 cut(s) 6, 318, 362, 453, 537, 540, 689, 746
Sau3AI GATC 7 cut(s) 195, 333, 522, 550, 558, 694, 883
Sau96I GGNCC 7 cut(s) 217, 325, 487, 488, 754, 811, 971
SchI GAGTC 2 cut(s) 90, 92
ScrFI CCNGG 4 cut(s) 290, 728, 729, 816
SduI GDGCHC 3 cut(s) 46, 491, 823
SfaNI GCATC 2 cut(s) 523, 1029
SfcI CTRYAG 1 cut(s) 439
SgrAI CRCCGGYG 1 cut(s) 496
SinI GGWCC 4 cut(s) 325, 754, 811, 971
SmaI CCCGGG 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SnaBI TACGTA 1 cut(s) 966
Sse9I AATT 5 cut(s) 477, 667, 927, 1019, 1034
SseBI AGGCCT 2 cut(s) 90, 350
SsiI CCGC 7 cut(s) 5, 121, 215, 368, 453, 536, 686
SspMI CTAG 1 cut(s) 509
SstI GAGCTC 1 cut(s) 46
StuI AGGCCT 2 cut(s) 90, 350
StyD4I CCNGG 4 cut(s) 288, 726, 727, 814
TaaI ACNGT 8 cut(s) 16, 236, 329, 392, 417, 703, 742, 785
TaiI ACGT 5 cut(s) 159, 641, 837, 968, 1028
TaqI TCGA 5 cut(s) 63, 160, 207, 271, 432
TasI AATT 5 cut(s) 477, 667, 927, 1019, 1034
TauI GCSGC 3 cut(s) 8, 455, 539
TfiI GAWTC 3 cut(s) 179, 306, 502
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 1 cut(s) 939
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 5 cut(s) 317, 361, 539, 688, 745
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 2 cut(s) 118, 228
TspGWI ACGGA 2 cut(s) 318, 879
TspMI CCCGGG 1 cut(s) 727
TspRI CASTG 1 cut(s) 939
Van91I CCANNNNNTGG 1 cut(s) 568
VpaK11BI GGWCC 4 cut(s) 325, 754, 811, 971
XbaI TCTAGA 1 cut(s) 508
XmaI CCCGGG 1 cut(s) 727
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.