Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001116

Physical Location & Seq

Genomic Coordinates Forward (+)

51685890 .. 51686856

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0344800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGCTTTTCTGGCGACTTAGGCTTGGATTCCGACCCCCAGAAATGGGTTATAGCCGGAATTCCGTTGCGGGCTCCGTTAAAGCCGATATACACCATTGCCAACCCGGTGGCGGACATCACCGAAGCAAACCACGGCGGCGGTGACGTGGAACAAGAAGAAGAAGAGTGTGGTTCGACGACTCCGACCGCTGCGGAGGCGAGAATTCCTACCAGGCTGACGTGTCCGCCTCCGCCGAGGAAAAGGAAGCCGGCGGCTGCTTCGAAATGTAACTATGGTAGTGTTAGAGAGTTCTTCACCCCTCCCGACTTAGAAAGCGTCTTCATACGCCGCCATGTCGAGAGGGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

117

Amino Acids

12.7

Weight (kDa)

5.67

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001116)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33740
malus_domestica	MD07G1178500.v1.1 MD16G1019700.v1.1 MD16G1019800.v1.1 MD16G1019900.v1.1 MD16G1020000.v1.1 MD16G1020100.v1.1
prunus_persica	Prupe.1G332200_v2.0.a1
pyrus_communis	pycom16g01780 pycom16g01790 pycom16g01800
rosa_chinensis	RchiOBHm_Chr1g0327761 RchiOBHm_Chr1g0333401 RchiOBHm_Chr4g0443221 RchiOBHm_Chr4g0443231 RchiOBHm_Chr4g0443251 RchiOBHm_Chr4g0443261
rosa_laevigata	RLG00000003074 RLG00000005942 RLG00000005944 RLG00000005945 RLG00000005946 RLG00000008366 RLG00000009730 RLG00000020853
rosa_multiflora	Rmu_co8298297.1_g000001 Rmu_sc0000826.1_g000014 Rmu_sc0000928.1_g000026 Rmu_sc0007238.1_g000006 Rmu_sc0007968.1_g000001 Rmu_sc0018919.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127360 Rroxscaffold_3G00246070 Rroxscaffold_5G00383820 Rroxscaffold_5G00383830 Rroxscaffold_5G00383840 Rroxscaffold_5G00383850 Rroxscaffold_6G00425780
rosa_rugosa	Rorug01G0050200 Rorug04G0344800 Rorug04G0344900 Rorug04G0344900 Rorug04G0345100
rosa_samantha	Rh4AG399600 Rh4AG399800 Rh4AG400000 Rh4BG411300 Rh4BG411600 Rh4BG411700 Rh4BG411800 Rh4CG426900 Rh4CG427000 Rh4DG406400 Rh4DG406500 Rh4DG406700 Rh4DG406900
rosa_wichuraiana	Rw1G006780 Rw4G034470 Rw4G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	60, 204
AfiI	CCNNNNNNNGG	3 cut(s)	45, 46, 112
AflIII	ACRYGT	1 cut(s)	221
AjiI	CACGTC	2 cut(s)	148, 222
AjnI	CCWGG	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	191, 257
ApoI	RAATTY	2 cut(s)	60, 204
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	112, 155, 289
AsuII	TTCGAA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	178, 244
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	107
BisI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
BlsI	GCNGC	5 cut(s)	140, 193, 256, 259, 332
Bme1390I	CCNGG	2 cut(s)	107, 214
BmgBI	CACGTC	2 cut(s)	148, 222
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	107, 214
BpiI	GAAGAC	1 cut(s)	313
Bpu14I	TTCGAA	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	133, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 46, 112
Bse118I	RCCGGY	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	133, 236
BseLI	CCNNNNNNNGG	3 cut(s)	45, 46, 112
BseMI	GCAATG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	178, 244
Bsh1285I	CGRYCG	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	189
BsiSI	CCGG	3 cut(s)	57, 107, 251
BslI	CCNNNNNNNGG	3 cut(s)	45, 46, 112
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	133, 236
Bst2UI	CCWGG	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	72, 252
BstDEI	CTNAG	2 cut(s)	19, 310
BstDSI	CCRYGG	1 cut(s)	133
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 21, 197
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	105, 212
BstV1I	GCAGC	2 cut(s)	178, 244
BstV2I	GAAGAC	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	133
BtrI	CACGTC	2 cut(s)	148, 222
Cac8I	GCNNGC	2 cut(s)	72, 252
Cfr10I	RCCGGY	1 cut(s)	250
CseI	GACGC	1 cut(s)	307
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	9 cut(s)	6, 24, 56, 74, 85, 217, 250, 257, 347
CviKI_1	RGCY	9 cut(s)	6, 24, 56, 74, 85, 217, 250, 257, 347
DdeI	CTNAG	2 cut(s)	19, 310
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	3 cut(s)	128, 216, 222
Eco24I	GRGCYC	1 cut(s)	76
EcoRI	GAATTC	2 cut(s)	60, 204
EcoRII	CCWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	338
FaiI	YATR	5 cut(s)	53, 91, 276, 326, 336
FatI	CATG	1 cut(s)	334
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
GluI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
HapII	CCGG	3 cut(s)	57, 107, 251
HgaI	GACGC	1 cut(s)	307
Hin1II	CATG	1 cut(s)	338
HinfI	GANTC	2 cut(s)	29, 181
HpaII	CCGG	3 cut(s)	57, 107, 251
HphI	GGTGA	3 cut(s)	112, 155, 289
Hpy188I	TCNGA	2 cut(s)	34, 186
Hpy188III	TCNNGA	2 cut(s)	305, 340
Hpy99I	CGWCG	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	147, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 21, 197
HpyF3I	CTNAG	2 cut(s)	19, 310
HpySE526I	ACGT	2 cut(s)	147, 221
Hsp92II	CATG	1 cut(s)	338
KroI	GCCGGC	1 cut(s)	250
KroNI	GCCGGC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	6 cut(s)	53, 70, 120, 199, 226, 264
Lsp1109I	GCAGC	2 cut(s)	178, 244
MaeII	ACGT	2 cut(s)	147, 221
MaeIII	GTNAC	2 cut(s)	143, 269
MboII	GAAGA	5 cut(s)	170, 173, 176, 286, 313
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	60, 204, 349
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	2 cut(s)	57, 209
MnlI	CCTC	5 cut(s)	190, 231, 240, 312, 336
MroNI	GCCGGC	1 cut(s)	250
MseI	TTAA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	3 cut(s)	57, 107, 251
MspR9I	CCNGG	2 cut(s)	107, 214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	12, 21, 197
NaeI	GCCGGC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	107
NgoMIV	GCCGGC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	1 cut(s)	75
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	143
NspV	TTCGAA	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PdiI	GCCGGC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	140, 193, 256, 259, 332
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	5 cut(s)	139, 192, 255, 258, 331
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	107, 214
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	2 cut(s)	150, 224
SfuI	TTCGAA	1 cut(s)	263
Sse9I	AATT	3 cut(s)	60, 204, 349
StyD4I	CCNGG	2 cut(s)	105, 212
TaiI	ACGT	2 cut(s)	150, 224
TaqI	TCGA	3 cut(s)	176, 263, 339
TasI	AATT	3 cut(s)	60, 204, 349
TauI	GCSGC	3 cut(s)	141, 257, 333
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	191, 257
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	2 cut(s)	54, 66
XapI	RAATTY	2 cut(s)	60, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.