Rorug04G0344900

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001116
Physical Location & Seq
Forward (+)
51689798 .. 51695959
6162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0344900.1

Sequence Viewer

Length: 1029 bp
ATGAGCAAGCAGACGACATGGTCAGCTCGATCCGACGGCTCTCGTTTAACGGCCTTTCCCTTGCTCAAAACCAACGGCGGACGAAGCCGCCACCACCACCACAACCACAACCACAAGAGCAGCTTCTGGAAGCACGGCACCCGTACAGTGTCCACGTCATCCTCCCCGCGCTATGATTTCTCGGATCTGCCTCAGGAATTGGTAGCCAAAATCGGGGCCTCTCTCAGCTACCACAGCCTCAAAACGGCGTCGTTGGTCTGCAGGTCGTGGTGCGAGGCCCTCCGGCCGGCCAGGGAGGCCACGAAGTTCTTGACTTGGGGGAAGCAGTTCAAGCACGGCCGCGGCGATTTCAAACCTAACGTCAACAATGCTCTCAAGATGTTCTTGAAGGCTGCCGAGCTTGGGTCCACGAAGGCGATGGTCGATGCCGGACTCATATTCTGGGAGAGAGGCGACAAGGATAAGGCGTTTGGGTTGTACCGGGAAGCTGCCGAGGCCGGTGACCGGAATGCGCAGGGCAATTTGGGGATGTGGTATTTGCAAGTTGAACCTCCAAATTCAAAGGAAGCTGTAAAGTGGTTATATCTTGCTTCTTTTCAGGGCCATGTCCGAGCTCAATACCAACTTGCAATTTGTCTGTATCAGGGACGTGGGGCAGATCGTAACATGAAAGAAGCGGCCAGGTGGTATTTGAGAGCTGCAGAACGTGGTTATGTGCGTGCTATGTATAATGTATCGCTGTGCTACAAGTATGGGGACGGATTAGTGCAGAATCATCGCCAAGCAAGAAAGTGGATGAAGTGGGCAGCTGATCTTGGCCATAGTAAAGCTCAATACGAGCATGGACTCACTCTCTTTTCGGAGGGTGAAAAGATTACAGCTTTAGTGTACTTGGAACTTGCAACCCGAGCTGGGGAAAGAGCAGCAATACATATCAAGGATGTAATTCGCGAACAGCTTTCACCAACTTCGCGGTATAATGCCATGCTTTTAGTGGAGAATTGGCGTGCTTTACCTTCATCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

342

Amino Acids

38.83

Weight (kDa)

9.86

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 60 - 93 6.1e-06 F-box-like
Sel1 PF08238 204 - 238 5.7e-08 Sel1 repeat
Sel1 PF08238 240 - 274 1.1e-07 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 19
Acc16I TGCGCA 1 cut(s) 513
Acc36I ACCTGC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 137
AccII CGCG 4 cut(s) 169, 342, 951, 973
AciI CCGC 7 cut(s) 78, 88, 167, 340, 342, 677, 973
AclWI GGATC 2 cut(s) 24, 192
AcoI YGGCCR 5 cut(s) 284, 288, 337, 678, 817
AcsI RAATTY 1 cut(s) 556
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 3 cut(s) 145, 479, 890
AfiI CCNNNNNNNGG 7 cut(s) 213, 244, 286, 402, 504, 912, 913
AgsI TTSAA 5 cut(s) 331, 352, 388, 548, 561
AjiI CACGTC 2 cut(s) 156, 650
AjnI CCWGG 2 cut(s) 290, 680
Alw21I GWGCWC 1 cut(s) 616
AlwI GGATC 2 cut(s) 24, 192
AlwNI CAGNNNCTG 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 906
ApeKI GCWGC 6 cut(s) 120, 392, 488, 698, 806, 923
ApoI RAATTY 1 cut(s) 556
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 2 cut(s) 171, 514
AspS9I GGNCC 4 cut(s) 216, 277, 405, 601
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 3 cut(s) 512, 878, 954
AvaI CYCGRG 1 cut(s) 906
AvaII GGWCC 1 cut(s) 405
AxyI CCTNAGG 1 cut(s) 192
BalI TGGCCA 1 cut(s) 819
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 616
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 6 cut(s) 132, 379, 475, 685, 818, 935
BccI CCATC 1 cut(s) 412
BceAI ACGGC 6 cut(s) 52, 66, 91, 151, 261, 352
BcgI CGANNNNNNTGC 2 cut(s) 758, 792
BciT130I CCWGG 2 cut(s) 292, 682
BcnI CCSGG 1 cut(s) 482
BfmI CTRYAG 2 cut(s) 259, 699
BfuAI ACCTGC 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 296
Bme1390I CCNGG 3 cut(s) 292, 482, 682
Bme18I GGWCC 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 906
BmgBI CACGTC 2 cut(s) 156, 650
BmgT120I GGNCC 4 cut(s) 216, 277, 405, 601
BmiI GGNNCC 3 cut(s) 139, 217, 406
BmrFI CCNGG 3 cut(s) 292, 482, 682
BmsI GCATC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 291, 340, 492
BsaWI WCCGGW 1 cut(s) 504
Bsc4I CCNNNNNNNGG 7 cut(s) 213, 244, 286, 402, 504, 912, 913
Bse118I RCCGGY 2 cut(s) 286, 497
Bse21I CCTNAGG 1 cut(s) 192
BseBI CCWGG 2 cut(s) 292, 682
BseDI CCNNGG 3 cut(s) 291, 340, 492
BseGI GGATG 4 cut(s) 158, 534, 801, 946
BseLI CCNNNNNNNGG 7 cut(s) 213, 244, 286, 402, 504, 912, 913
BseMII CTCAG 2 cut(s) 206, 238
BseX3I CGGCCG 2 cut(s) 284, 337
BseXI GCAGC 6 cut(s) 132, 379, 475, 685, 818, 935
BseYI CCCAGC 1 cut(s) 911
BsgI GTGCAG 1 cut(s) 788
Bsh1236I CGCG 4 cut(s) 169, 342, 951, 973
Bsh1285I CGRYCG 2 cut(s) 287, 340
BshNI GGYRCC 1 cut(s) 137
BsiEI CGRYCG 2 cut(s) 287, 340
BsiHKAI GWGCWC 1 cut(s) 616
BsiHKCI CYCGRG 1 cut(s) 906
BsiSI CCGG 6 cut(s) 283, 287, 429, 481, 498, 505
BslFI GGGAC 2 cut(s) 660, 770
BslI CCNNNNNNNGG 7 cut(s) 213, 244, 286, 402, 504, 912, 913
BsmFI GGGAC 2 cut(s) 660, 770
BsmI GAATGC 1 cut(s) 514
BsoBI CYCGRG 1 cut(s) 906
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 4 cut(s) 29, 184, 658, 811
Bsp68I TCGCGA 1 cut(s) 951
BspACI CCGC 7 cut(s) 78, 88, 167, 340, 342, 677, 973
BspCNI CTCAG 2 cut(s) 205, 237
BspFNI CGCG 4 cut(s) 169, 342, 951, 973
BspLI GGNNCC 3 cut(s) 139, 217, 406
BspMAI CTGCAG 2 cut(s) 263, 703
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 2 cut(s) 24, 192
BspT107I GGYRCC 1 cut(s) 137
BsrFI RCCGGY 2 cut(s) 286, 497
BssAI RCCGGY 2 cut(s) 286, 497
BssECI CCNNGG 3 cut(s) 291, 340, 492
BssMI GATC 4 cut(s) 29, 184, 658, 811
BssNI GRCGYC 1 cut(s) 248
Bst2UI CCWGG 2 cut(s) 292, 682
Bst4CI ACNGT 1 cut(s) 148
BstACI GRCGYC 1 cut(s) 248
BstC8I GCNNGC 4 cut(s) 8, 288, 720, 1008
BstDEI CTNAG 2 cut(s) 192, 224
BstDSI CCRYGG 1 cut(s) 340
BstEII GGTNACC 1 cut(s) 500
BstF5I GGATG 4 cut(s) 158, 534, 801, 946
BstFNI CGCG 4 cut(s) 169, 342, 951, 973
BstHHI GCGC 2 cut(s) 171, 514
BstKTI GATC 4 cut(s) 32, 187, 661, 814
BstMBI GATC 4 cut(s) 29, 184, 658, 811
BstMCI CGRYCG 2 cut(s) 287, 340
BstMWI GCNNNNNNNGC 6 cut(s) 84, 234, 296, 331, 494, 908
BstNI CCWGG 2 cut(s) 292, 682
BstPI GGTNACC 1 cut(s) 500
BstSCI CCNGG 3 cut(s) 290, 480, 680
BstSFI CTRYAG 2 cut(s) 259, 699
BstUI CGCG 4 cut(s) 169, 342, 951, 973
BstV1I GCAGC 6 cut(s) 132, 379, 475, 685, 818, 935
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BstZI CGGCCG 2 cut(s) 284, 337
Bsu36I CCTNAGG 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 340
BtgZI GCGATG 2 cut(s) 431, 761
BtrI CACGTC 2 cut(s) 156, 650
BtsCI GGATG 4 cut(s) 158, 534, 801, 946
BtsIMutI CAGTG 1 cut(s) 153
BtuMI TCGCGA 1 cut(s) 951
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 4 cut(s) 8, 288, 720, 1008
CaiI CAGNNNCTG 1 cut(s) 126
CfoI GCGC 2 cut(s) 171, 514
Cfr10I RCCGGY 2 cut(s) 286, 497
Cfr13I GGNCC 4 cut(s) 216, 277, 405, 601
Cfr42I CCGCGG 1 cut(s) 343
CseI GACGC 1 cut(s) 237
Csp6I GTAC 3 cut(s) 144, 478, 889
CviAII CATG 5 cut(s) 18, 605, 667, 842, 985
CviQI GTAC 3 cut(s) 144, 478, 889
DdeI CTNAG 2 cut(s) 192, 224
DpnI GATC 4 cut(s) 31, 186, 660, 813
DpnII GATC 4 cut(s) 29, 184, 658, 811
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 5 cut(s) 284, 288, 337, 678, 817
EagI CGGCCG 2 cut(s) 284, 337
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 614
EclXI CGGCCG 2 cut(s) 284, 337
Eco24I GRGCYC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 405
Eco52I CGGCCG 2 cut(s) 284, 337
Eco53kI GAGCTC 1 cut(s) 614
Eco81I CCTNAGG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 906
Eco91I GGTNACC 1 cut(s) 500
EcoICRI GAGCTC 1 cut(s) 614
EcoO109I RGGNCCY 2 cut(s) 216, 277
EcoO65I GGTNACC 1 cut(s) 500
EcoRII CCWGG 2 cut(s) 290, 680
EcoT38I GRGCYC 1 cut(s) 616
FaeI CATG 5 cut(s) 21, 608, 670, 845, 988
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 368, 400
FaqI GGGAC 2 cut(s) 660, 770
FatI CATG 5 cut(s) 17, 604, 666, 841, 984
FauI CCCGC 1 cut(s) 174
FokI GGATG 4 cut(s) 145, 541, 808, 953
FriOI GRGCYC 1 cut(s) 616
FseI GGCCGGCC 1 cut(s) 290
FspI TGCGCA 1 cut(s) 513
GlaI GCGC 2 cut(s) 170, 513
GsaI CCCAGC 1 cut(s) 915
HapII CCGG 6 cut(s) 283, 287, 429, 481, 498, 505
HgaI GACGC 1 cut(s) 237
HhaI GCGC 2 cut(s) 171, 514
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 5 cut(s) 21, 608, 670, 845, 988
Hin6I GCGC 2 cut(s) 169, 512
HinP1I GCGC 2 cut(s) 169, 512
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 3 cut(s) 432, 772, 846
HpaII CCGG 6 cut(s) 283, 287, 429, 481, 498, 505
HphI GGTGA 3 cut(s) 512, 878, 954
Hpy166II GTNNAC 4 cut(s) 153, 364, 408, 889
Hpy188I TCNGA 4 cut(s) 34, 184, 611, 862
Hpy188III TCNNGA 7 cut(s) 127, 194, 310, 376, 385, 950, 1026
Hpy8I GTNNAC 4 cut(s) 153, 364, 408, 889
Hpy99I CGWCG 2 cut(s) 38, 253
HpyAV CCTTC 3 cut(s) 382, 406, 1026
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 4 cut(s) 155, 360, 649, 706
HpyCH4V TGCA 6 cut(s) 261, 541, 629, 701, 769, 902
HpyF10VI GCNNNNNNNGC 6 cut(s) 84, 234, 296, 331, 494, 908
HpyF3I CTNAG 2 cut(s) 192, 224
HpySE526I ACGT 4 cut(s) 155, 360, 649, 706
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 5 cut(s) 21, 608, 670, 845, 988
HspAI GCGC 2 cut(s) 169, 512
KroI GCCGGC 1 cut(s) 286
KroNI GCCGGC 1 cut(s) 288
KspI CCGCGG 1 cut(s) 343
Kzo9I GATC 4 cut(s) 29, 184, 658, 811
Lsp1109I GCAGC 6 cut(s) 132, 379, 475, 685, 818, 935
LweI GCATC 1 cut(s) 415
MaeII ACGT 4 cut(s) 155, 360, 649, 706
MaeIII GTNAC 2 cut(s) 500, 662
MalI GATC 4 cut(s) 31, 186, 660, 813
MboI GATC 4 cut(s) 29, 184, 658, 811
MboII GAAGA 1 cut(s) 1014
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 1 cut(s) 819
MluCI AATT 6 cut(s) 197, 520, 556, 630, 945, 1000
MluNI TGGCCA 1 cut(s) 819
MlyI GAGTC 2 cut(s) 426, 840
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 819
MroNI GCCGGC 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 819
MseI TTAA 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 819
MspA1I CMGCKG 2 cut(s) 342, 809
MspI CCGG 6 cut(s) 283, 287, 429, 481, 498, 505
MspR9I CCNGG 3 cut(s) 292, 482, 682
Mva1269I GAATGC 1 cut(s) 514
MvaI CCWGG 2 cut(s) 292, 682
MvnI CGCG 4 cut(s) 169, 342, 951, 973
MwoI GCNNNNNNNGC 6 cut(s) 84, 234, 296, 331, 494, 908
NaeI GCCGGC 1 cut(s) 288
NciI CCSGG 1 cut(s) 482
NdeII GATC 4 cut(s) 29, 184, 658, 811
NgoMIV GCCGGC 1 cut(s) 286
NlaIII CATG 5 cut(s) 21, 608, 670, 845, 988
NlaIV GGNNCC 3 cut(s) 139, 217, 406
NmeAIII GCCGAG 2 cut(s) 421, 517
NmuCI GTSAC 1 cut(s) 500
NruI TCGCGA 1 cut(s) 951
NsbI TGCGCA 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PctI GAATGC 1 cut(s) 514
PdiI GCCGGC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 772
PflFI GACNNNGTC 1 cut(s) 19
PleI GAGTC 2 cut(s) 426, 840
PpsI GAGTC 2 cut(s) 426, 840
Psp124BI GAGCTC 1 cut(s) 616
Psp6I CCWGG 2 cut(s) 290, 680
PspEI GGTNACC 1 cut(s) 500
PspFI CCCAGC 1 cut(s) 911
PspGI CCWGG 2 cut(s) 290, 680
PspN4I GGNNCC 3 cut(s) 139, 217, 406
PspPI GGNCC 4 cut(s) 216, 277, 405, 601
PstI CTGCAG 2 cut(s) 263, 703
PstNI CAGNNNCTG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 184
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 809
RigI GGCCGGCC 1 cut(s) 290
RruI TCGCGA 1 cut(s) 951
RsaI GTAC 3 cut(s) 145, 479, 890
RsaNI GTAC 3 cut(s) 144, 478, 889
SacI GAGCTC 1 cut(s) 616
SacII CCGCGG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 47
Sau3AI GATC 4 cut(s) 29, 184, 658, 811
Sau96I GGNCC 4 cut(s) 216, 277, 405, 601
SchI GAGTC 2 cut(s) 426, 840
ScrFI CCNGG 3 cut(s) 292, 482, 682
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 2 cut(s) 259, 699
SfiI GGCCNNNNNGGCC 1 cut(s) 296
Sfr303I CCGCGG 1 cut(s) 343
SgrBI CCGCGG 1 cut(s) 343
SinI GGWCC 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 6 cut(s) 197, 520, 556, 630, 945, 1000
SsiI CCGC 7 cut(s) 78, 88, 167, 340, 342, 677, 973
SstI GAGCTC 1 cut(s) 616
StyD4I CCNGG 3 cut(s) 290, 480, 680
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 4 cut(s) 158, 363, 652, 709
TaqI TCGA 2 cut(s) 28, 423
TasI AATT 6 cut(s) 197, 520, 556, 630, 945, 1000
TatI WGTACW 1 cut(s) 888
TauI GCSGC 4 cut(s) 90, 342, 345, 680
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 6 cut(s) 120, 392, 488, 698, 806, 923
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 3 cut(s) 683, 812, 1008
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 405
XapI RAATTY 1 cut(s) 556
XcmI CCANNNNNNNNNTGG 2 cut(s) 415, 991
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.