RLG00000009730

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001116
Physical Location & Seq
Reverse (-)
57010838 .. 57011327
490 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009730

Sequence Viewer

Length: 369 bp
ATGTTCCTTAACGTGTTCATCAAGATCAAGAACGAGATGGACTCAAGCTTCTCTGTCCTCCACTCTGATCGTCGCTCTGCCATAGTCAACGAAGTCAGCGACTTGAGTTGGAATTTTGATTTCTTCCACATCACTAACCACGGCATACCGTATATAGTTCTGACTGTAGGATCACGGTCGTCAAGACCTTCCACGAGCAGCCAACAGAGGTCAAAGCCTAGTTCTACAGTAGAGAGAGGGGCCAGGGATGAGGAGTTGAATGTGATTGAGGAGGATATTACAGAGAAGCTACTGGAGTTTGAAGCAATGGTGGTGGGCGAAGAGGAGGGAGTGATTAGGTGCGACGTGAGTGCAGACGGGATCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

123

Amino Acids

13.73

Weight (kDa)

4.71

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 178, 368
AcsI RAATTY 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 2 cut(s) 259, 302
AjiI CACGTC 1 cut(s) 346
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 2 cut(s) 48, 289
AluI AGCT 2 cut(s) 48, 289
AlwI GGATC 2 cut(s) 178, 368
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 240
BauI CACGAG 1 cut(s) 193
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 244
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 2 cut(s) 165, 225
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 244
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 2 cut(s) 28, 124
BsaJI CCNNGG 2 cut(s) 139, 243
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 139, 243
BseGI GGATG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 3 cut(s) 266, 284, 338
BseXI GCAGC 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 179
BsnI GGCC 1 cut(s) 242
Bsp143I GATC 4 cut(s) 24, 67, 170, 360
BspANI GGCC 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 2 cut(s) 178, 368
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 139, 243
BssMI GATC 4 cut(s) 24, 67, 170, 360
BssSI CACGAG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 4 cut(s) 150, 166, 177, 229
Bst6I CTCTTC 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 4 cut(s) 27, 70, 173, 363
BstMBI GATC 4 cut(s) 24, 67, 170, 360
BstMCI CGRYCG 1 cut(s) 179
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 2 cut(s) 165, 225
BstV1I GCAGC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 139
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 240
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviJI RGCY 5 cut(s) 48, 201, 217, 242, 289
CviKI_1 RGCY 5 cut(s) 48, 201, 217, 242, 289
DpnI GATC 4 cut(s) 26, 69, 172, 362
DpnII GATC 4 cut(s) 24, 67, 170, 360
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 242
FaiI YATR 4 cut(s) 83, 146, 153, 155
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 199
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 242
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 67, 162
Hpy188III TCNNGA 3 cut(s) 22, 28, 183
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 75, 347
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 4 cut(s) 150, 166, 177, 229
HpyCH4IV ACGT 2 cut(s) 12, 345
HpyCH4V TGCA 1 cut(s) 353
HpySE526I ACGT 2 cut(s) 12, 345
Kzo9I GATC 4 cut(s) 24, 67, 170, 360
LpnPI CCDG 3 cut(s) 229, 256, 278
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 1 cut(s) 219
MaeII ACGT 2 cut(s) 12, 345
MalI GATC 4 cut(s) 26, 69, 172, 362
MboI GATC 4 cut(s) 24, 67, 170, 360
MboII GAAGA 2 cut(s) 115, 332
MflI RGATCY 1 cut(s) 360
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 8 cut(s) 68, 201, 230, 244, 262, 265, 316, 319
MseI TTAA 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
NdeII GATC 4 cut(s) 24, 67, 170, 360
NlaIV GGNNCC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PkrI GCNGC 1 cut(s) 200
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 360
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 4 cut(s) 24, 67, 170, 360
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 244
SetI ASST 7 cut(s) 15, 50, 190, 212, 291, 341, 348
SfcI CTRYAG 2 cut(s) 165, 225
SmlI CTYRAG 2 cut(s) 43, 103
SmoI CTYRAG 2 cut(s) 43, 103
Sse9I AATT 1 cut(s) 112
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 4 cut(s) 150, 166, 177, 229
TaiI ACGT 2 cut(s) 15, 348
TasI AATT 1 cut(s) 112
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 7
XapI RAATTY 1 cut(s) 112
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.