Rmu_sc0007238.1_g000006

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007238.1
OG0001116
Physical Location & Seq
Reverse (-)
22000 .. 22675
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007238.1_g000006.1.cds

Sequence Viewer

Length: 363 bp
atgataggccagggcgtagcgtatttctccaacgtcgacctgtacaagtccaaagccgccagctggcgcgacacgcttcaggttaagcacgatggggcttgggtggatgtgaaacctgtccccggtgctcttgtgattaacgttggtgatgtactccagattatttcaaacgaggaatacaaaagcgtggatcaccgggtgttggcgaatccacaccacgaggcgcgtctctcaatagccgtgcttttgaatccgagcaatagagagggcgtgtttggtccattgccggagctggtctcgccggagaagccagctctctacaaagagttcgagttctcggaattcctgatgaggttcttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

120

Amino Acids

13.5

Weight (kDa)

5.75

Isoelectric Point (pI)

22.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 36
AccII CGCG 2 cut(s) 69, 226
AciI CCGC 1 cut(s) 57
AclI AACGTT 1 cut(s) 141
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 62
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 2 cut(s) 44, 153
AfiI CCNNNNNNNGG 3 cut(s) 63, 122, 202
AgsI TTSAA 2 cut(s) 168, 250
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 3 cut(s) 63, 292, 314
AluI AGCT 3 cut(s) 63, 292, 314
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 233, 301
AlwI GGATC 1 cut(s) 198
AoxI GGCC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 2 cut(s) 69, 226
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 2 cut(s) 123, 197
AsuHPI GGTGA 2 cut(s) 158, 185
AvaII GGWCC 1 cut(s) 278
BauI CACGAG 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 130
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 11
BcnI CCSGG 2 cut(s) 123, 197
BcoDI GTCTC 2 cut(s) 233, 301
BfaI CTAG 1 cut(s) 361
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 3 cut(s) 11, 123, 197
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmrFI CCNGG 3 cut(s) 11, 123, 197
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 123, 197
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 10, 121
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 122, 202
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 10, 121
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 3 cut(s) 63, 122, 202
BseMI GCAATG 1 cut(s) 281
Bsh1236I CGCG 2 cut(s) 69, 226
BshFI GGCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 4 cut(s) 123, 196, 287, 302
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 63, 122, 202
BsmAI GTCTC 2 cut(s) 233, 301
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 9
BspFNI CGCG 2 cut(s) 69, 226
BspPI GGATC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 10, 121
BssMI GATC 1 cut(s) 190
BssSI CACGAG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 3 cut(s) 61, 65, 312
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 2 cut(s) 69, 226
BstHHI GCGC 2 cut(s) 69, 226
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 233, 301
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 73, 298, 307
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 3 cut(s) 9, 121, 195
BstUI CGCG 2 cut(s) 69, 226
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 61, 65, 312
CfoI GCGC 2 cut(s) 69, 226
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 43, 152
CviJI RGCY 8 cut(s) 9, 56, 63, 98, 239, 292, 310, 314
CviKI_1 RGCY 8 cut(s) 9, 56, 63, 98, 239, 292, 310, 314
CviQI GTAC 2 cut(s) 43, 152
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraIII CACNNNGTG 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 233
FaqI GGGAC 1 cut(s) 104
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 361
GlaI GCGC 2 cut(s) 68, 225
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 1 cut(s) 9
HapII CCGG 4 cut(s) 123, 196, 287, 302
HgaI GACGC 1 cut(s) 215
HhaI GCGC 2 cut(s) 69, 226
Hin6I GCGC 2 cut(s) 67, 224
HinP1I GCGC 2 cut(s) 67, 224
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 2 cut(s) 208, 250
HpaII CCGG 4 cut(s) 123, 196, 287, 302
HphI GGTGA 2 cut(s) 158, 185
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 255, 340
Hpy188III TCNNGA 2 cut(s) 157, 346
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 38
HpyCH4IV ACGT 2 cut(s) 33, 141
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 298, 307
HpySE526I ACGT 2 cut(s) 33, 141
HspAI GCGC 2 cut(s) 67, 224
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 289
MaeI CTAG 1 cut(s) 361
MaeII ACGT 2 cut(s) 33, 141
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 4 cut(s) 166, 214, 259, 345
MseI TTAA 2 cut(s) 84, 138
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 4 cut(s) 123, 196, 287, 302
MspR9I CCNGG 3 cut(s) 11, 123, 197
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 2 cut(s) 69, 226
MwoI GCNNNNNNNGC 3 cut(s) 73, 298, 307
NciI CCSGG 2 cut(s) 123, 197
NdeII GATC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 208, 250
PkrI GCNGC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspPI GGNCC 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 63
RsaI GTAC 2 cut(s) 44, 153
RsaNI GTAC 2 cut(s) 43, 152
SalI GTCGAC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 84, 138
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 278
ScrFI CCNGG 3 cut(s) 11, 123, 197
SduI GDGCHC 1 cut(s) 130
SetI ASST 9 cut(s) 36, 42, 65, 84, 118, 144, 294, 316, 356
SinI GGWCC 1 cut(s) 278
Sse9I AATT 1 cut(s) 341
SsiI CCGC 1 cut(s) 57
SspMI CTAG 1 cut(s) 361
StyD4I CCNGG 3 cut(s) 9, 121, 195
TaiI ACGT 2 cut(s) 36, 144
TaqI TCGA 2 cut(s) 36, 330
TasI AATT 1 cut(s) 341
TatI WGTACW 2 cut(s) 42, 151
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 2 cut(s) 208, 250
Tru1I TTAA 2 cut(s) 84, 138
Tru9I TTAA 2 cut(s) 84, 138
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.