Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001116

Physical Location & Seq

Genomic Coordinates Reverse (-)

1431591 .. 1432304

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1019900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACGGGGGTGGCGATGGAGAACACCGTGATCGGCGAACTGGATTACGATAGAGCTAAAGAAATCAAGCAATTCGACAGCTCCAAGCTCGGAGTCAAAGGCCTCGTTGACTCTGGCCTCACCTCCATCCCCCGCTTCTTCATCCACCAGCCCGAATCTCTACCCGACCCCCGACACCATACCAAACCCGATATCCCAATCCCCACCATCGACCTCGCGGATCTTCACACCCATCGCCGCTCCTCCATCGTTGACCAAATCAGCCGCGCCTGCCGCACGTTCGGGTTCTTCCAGATCACTAATCACGGCATCCCATCCGTAATCCTGGACCGCACGATCGCAGCCATCAGGGCCTTCCACGAGCAGCCGACGGAGGTGAAAGCGCGCTTCTACCGTCGAGAGATGGGCACGGGTGTATCGTATTTCTCCAACCTGGACCTCTACAGCTCAAAAGCCGCCAGCTGGAGGGACACGCTTCAAATGAGGTTGGGCCCGATTCCACCGGTTCCTGAAGAAGTTCCGGAGATTTGCCGGGTGGATGTTGTTGGGACCGTGAGATCAAACGGCTGGGAGAGGTGCTTATGGAGTTGGCGAGCGAAGGGCTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

204

Amino Acids

23.07

Weight (kDa)

7.8

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	67 - 162	9.8e-20	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001116)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g33740
malus_domestica	MD07G1178500.v1.1 MD16G1019700.v1.1 MD16G1019800.v1.1 MD16G1019900.v1.1 MD16G1020000.v1.1 MD16G1020100.v1.1
prunus_persica	Prupe.1G332200_v2.0.a1
pyrus_communis	pycom16g01780 pycom16g01790 pycom16g01800
rosa_chinensis	RchiOBHm_Chr1g0327761 RchiOBHm_Chr1g0333401 RchiOBHm_Chr4g0443221 RchiOBHm_Chr4g0443231 RchiOBHm_Chr4g0443251 RchiOBHm_Chr4g0443261
rosa_laevigata	RLG00000003074 RLG00000005942 RLG00000005944 RLG00000005945 RLG00000005946 RLG00000008366 RLG00000009730 RLG00000020853
rosa_multiflora	Rmu_co8298297.1_g000001 Rmu_sc0000826.1_g000014 Rmu_sc0000928.1_g000026 Rmu_sc0007238.1_g000006 Rmu_sc0007968.1_g000001 Rmu_sc0018919.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127360 Rroxscaffold_3G00246070 Rroxscaffold_5G00383820 Rroxscaffold_5G00383830 Rroxscaffold_5G00383840 Rroxscaffold_5G00383850 Rroxscaffold_6G00425780
rosa_rugosa	Rorug01G0050200 Rorug04G0344800 Rorug04G0344900 Rorug04G0344900 Rorug04G0345100
rosa_samantha	Rh4AG399600 Rh4AG399800 Rh4AG400000 Rh4BG411300 Rh4BG411600 Rh4BG411700 Rh4BG411800 Rh4CG426900 Rh4CG427000 Rh4DG406400 Rh4DG406500 Rh4DG406700 Rh4DG406900
rosa_wichuraiana	Rw1G006780 Rw4G034470 Rw4G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	240
AccII	CGCG	3 cut(s)	218, 267, 385
AccIII	TCCGGA	1 cut(s)	520
AciI	CCGC	7 cut(s)	133, 218, 238, 265, 274, 331, 456
AclWI	GGATC	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	462, 465
AgeI	ACCGGT	1 cut(s)	502
AgsI	TTSAA	1 cut(s)	479
AjnI	CCWGG	2 cut(s)	324, 432
AluBI	AGCT	5 cut(s)	56, 81, 88, 447, 462
AluI	AGCT	5 cut(s)	56, 81, 88, 447, 462
AlwI	GGATC	1 cut(s)	228
Aor13HI	TCCGGA	1 cut(s)	520
AoxI	GGCC	4 cut(s)	100, 115, 351, 490
ApaI	GGGCCC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	341, 364
AsiGI	ACCGGT	1 cut(s)	502
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	3 cut(s)	269, 385, 387
AspS9I	GGNCC	6 cut(s)	328, 351, 436, 490, 491, 549
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	112, 388
AvaII	GGWCC	3 cut(s)	328, 436, 549
BaeGI	GKGCMC	2 cut(s)	410, 494
BaeI	ACNNNNGTAYC	2 cut(s)	399, 432
BanII	GRGCYC	1 cut(s)	494
BauI	CACGAG	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	353, 376
BccI	CCATC	8 cut(s)	10, 134, 215, 240, 254, 322, 353, 397
BceAI	ACGGC	2 cut(s)	322, 580
BciT130I	CCWGG	2 cut(s)	326, 434
BcnI	CCSGG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	442
BglI	GCCNNNNNGGC	1 cut(s)	350
BisI	GCNGC	6 cut(s)	238, 265, 274, 342, 365, 456
BlsI	GCNGC	6 cut(s)	239, 266, 275, 343, 366, 457
Bme1390I	CCNGG	3 cut(s)	326, 434, 533
Bme18I	GGWCC	3 cut(s)	328, 436, 549
BmgT120I	GGNCC	6 cut(s)	328, 351, 436, 490, 491, 549
BmiI	GGNNCC	3 cut(s)	492, 507, 550
BmrFI	CCNGG	3 cut(s)	326, 434, 533
BmsI	GCATC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	533
BsaWI	WCCGGW	2 cut(s)	502, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 465
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	326, 434
BseGI	GGATG	5 cut(s)	126, 141, 309, 314, 544
BseLI	CCNNNNNNNGG	2 cut(s)	462, 465
BseNI	ACTGG	1 cut(s)	45
BsePI	GCGCGC	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	2 cut(s)	410, 494
BseXI	GCAGC	2 cut(s)	353, 376
BseYI	CCCAGC	2 cut(s)	567, 603
Bsh1236I	CGCG	3 cut(s)	218, 267, 385
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	4 cut(s)	102, 117, 353, 492
BshTI	ACCGGT	1 cut(s)	502
BsiEI	CGRYCG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	503, 521, 532
BslFI	GGGAC	2 cut(s)	482, 562
BslI	CCNNNNNNNGG	2 cut(s)	462, 465
BsmFI	GGGAC	2 cut(s)	482, 562
BsnI	GGCC	4 cut(s)	102, 117, 353, 492
Bsp120I	GGGCCC	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	410, 494
Bsp13I	TCCGGA	1 cut(s)	520
Bsp143I	GATC	5 cut(s)	30, 220, 294, 336, 557
BspACI	CCGC	7 cut(s)	133, 218, 238, 265, 274, 331, 456
BspANI	GGCC	4 cut(s)	102, 117, 353, 492
BspEI	TCCGGA	1 cut(s)	520
BspFNI	CGCG	3 cut(s)	218, 267, 385
BspLI	GGNNCC	3 cut(s)	492, 507, 550
BspPI	GGATC	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	502
BssHII	GCGCGC	1 cut(s)	383
BssMI	GATC	5 cut(s)	30, 220, 294, 336, 557
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	2 cut(s)	326, 434
Bst4CI	ACNGT	3 cut(s)	28, 395, 553
BstC8I	GCNNGC	4 cut(s)	271, 385, 460, 594
BstF5I	GGATG	5 cut(s)	126, 141, 309, 314, 544
BstFNI	CGCG	3 cut(s)	218, 267, 385
BstHHI	GCGC	3 cut(s)	269, 385, 387
BstKTI	GATC	5 cut(s)	33, 223, 297, 339, 560
BstMBI	GATC	5 cut(s)	30, 220, 294, 336, 557
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 273, 350
BstNI	CCWGG	2 cut(s)	326, 434
BstSCI	CCNGG	3 cut(s)	324, 432, 531
BstSFI	CTRYAG	1 cut(s)	442
BstSLI	GKGCMC	2 cut(s)	410, 494
BstUI	CGCG	3 cut(s)	218, 267, 385
BstV1I	GCAGC	2 cut(s)	353, 376
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	4 cut(s)	102, 117, 353, 492
BtgZI	GCGATG	2 cut(s)	29, 218
BtsCI	GGATG	5 cut(s)	126, 141, 309, 314, 544
Cac8I	GCNNGC	4 cut(s)	271, 385, 460, 594
CfoI	GCGC	3 cut(s)	269, 385, 387
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	6 cut(s)	328, 351, 436, 490, 491, 549
CspAI	ACCGGT	1 cut(s)	502
DpnI	GATC	5 cut(s)	32, 222, 296, 338, 559
DpnII	GATC	5 cut(s)	30, 220, 294, 336, 557
Eco147I	AGGCCT	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	494
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	328, 436, 549
Eco57I	CTGAAG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	324, 432
EcoRV	GATATC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	494
FaiI	YATR	2 cut(s)	180, 583
FaqI	GGGAC	2 cut(s)	482, 562
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	6 cut(s)	238, 265, 274, 342, 365, 456
FokI	GGATG	5 cut(s)	113, 128, 296, 301, 551
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	6 cut(s)	238, 265, 274, 342, 365, 456
GlaI	GCGC	3 cut(s)	268, 384, 386
GluI	GCNGC	6 cut(s)	238, 265, 274, 342, 365, 456
GsaI	CCCAGC	2 cut(s)	571, 607
GsuI	CTGGAG	1 cut(s)	484
HaeIII	GGCC	4 cut(s)	102, 117, 353, 492
HapII	CCGG	3 cut(s)	503, 521, 532
HhaI	GCGC	3 cut(s)	269, 385, 387
Hin6I	GCGC	3 cut(s)	267, 383, 385
HinP1I	GCGC	3 cut(s)	267, 383, 385
HincII	GTYRAC	2 cut(s)	109, 253
HindII	GTYRAC	2 cut(s)	109, 253
HinfI	GANTC	4 cut(s)	93, 110, 155, 496
HpaII	CCGG	3 cut(s)	503, 521, 532
HphI	GGTGA	2 cut(s)	112, 388
Hpy166II	GTNNAC	2 cut(s)	109, 253
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	4 cut(s)	292, 398, 509, 521
Hpy8I	GTNNAC	2 cut(s)	109, 253
Hpy99I	CGWCG	2 cut(s)	373, 399
HpyAV	CCTTC	2 cut(s)	364, 592
HpyCH4III	ACNGT	3 cut(s)	28, 395, 553
HpyCH4IV	ACGT	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 273, 350
HpySE526I	ACGT	1 cut(s)	278
HspAI	GCGC	3 cut(s)	267, 383, 385
Kpn2I	TCCGGA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	30, 220, 294, 336, 557
LmnI	GCTCC	2 cut(s)	86, 245
Lsp1109I	GCAGC	2 cut(s)	353, 376
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	1 cut(s)	278
MalI	GATC	5 cut(s)	32, 222, 296, 338, 559
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	5 cut(s)	30, 220, 294, 336, 557
MboII	GAAGA	4 cut(s)	130, 215, 280, 524
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	2 cut(s)	410, 494
MluCI	AATT	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	102, 104
MmeI	TCCRAC	1 cut(s)	453
MroI	TCCGGA	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	462
MspI	CCGG	3 cut(s)	503, 521, 532
MspR9I	CCNGG	3 cut(s)	326, 434, 533
MvaI	CCWGG	2 cut(s)	326, 434
MvnI	CGCG	3 cut(s)	218, 267, 385
MwoI	GCNNNNNNNGC	3 cut(s)	270, 273, 350
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	5 cut(s)	30, 220, 294, 336, 557
NlaIV	GGNNCC	3 cut(s)	492, 507, 550
PauI	GCGCGC	1 cut(s)	383
PceI	AGGCCT	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 416
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	155, 496
PfoI	TCCNGGA	1 cut(s)	324
PinAI	ACCGGT	1 cut(s)	502
PkrI	GCNGC	6 cut(s)	239, 266, 275, 343, 366, 457
Ple19I	CGATCG	1 cut(s)	339
PleI	GAGTC	2 cut(s)	101, 104
PpsI	GAGTC	2 cut(s)	101, 104
Psp6I	CCWGG	2 cut(s)	324, 432
PspFI	CCCAGC	2 cut(s)	567, 603
PspGI	CCWGG	2 cut(s)	324, 432
PspN4I	GGNNCC	3 cut(s)	492, 507, 550
PspOMI	GGGCCC	1 cut(s)	490
PspPI	GGNCC	6 cut(s)	328, 351, 436, 490, 491, 549
PsuI	RGATCY	1 cut(s)	220
PteI	GCGCGC	1 cut(s)	383
PvuI	CGATCG	1 cut(s)	339
PvuII	CAGCTG	1 cut(s)	462
SatI	GCNGC	6 cut(s)	238, 265, 274, 342, 365, 456
Sau3AI	GATC	5 cut(s)	30, 220, 294, 336, 557
Sau96I	GGNCC	6 cut(s)	328, 351, 436, 490, 491, 549
SchI	GAGTC	2 cut(s)	102, 104
ScrFI	CCNGG	3 cut(s)	326, 434, 533
SduI	GDGCHC	2 cut(s)	410, 494
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	1 cut(s)	442
SinI	GGWCC	3 cut(s)	328, 436, 549
Sse9I	AATT	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	102
SsiI	CCGC	7 cut(s)	133, 218, 238, 265, 274, 331, 456
StuI	AGGCCT	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	324, 432, 531
TaaI	ACNGT	3 cut(s)	28, 395, 553
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	3 cut(s)	75, 210, 397
TasI	AATT	1 cut(s)	71
TauI	GCSGC	4 cut(s)	240, 267, 276, 458
TfiI	GAWTC	2 cut(s)	155, 496
TseI	GCWGC	2 cut(s)	341, 364
TspDTI	ATGAA	1 cut(s)	130
TspGWI	ACGGA	2 cut(s)	307, 386
VpaK11BI	GGWCC	3 cut(s)	328, 436, 549
XmnI	GAANNNNTTC	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.