Rh4DG406500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001116
Physical Location & Seq
Reverse (-)
62015351 .. 62015797
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG406500.1

Sequence Viewer

Length: 447 bp
ATGGCGGCAAATATTGGGGAACAGGGTTATGACCGAGCTGAAGAAGTGAAGCAATTCAACGAGTCCAAGCTTGGAGTCAAAGGCCTCGTCGACTCGGGTCTCTCCTCCACCCCTCTAATCTTTATCCACCCACTCGAGTTACAGCAGTTGCAGCCCACGACCCGACTTGACGCCCAACCAATCCCTACAATCGACCTATCCGACCTCCACTCTGATCGCCACTCTGCCATCGTCGACCAAGTCAGCGCCGTGTGCTGCAACTTTGGTTTCTTCCAGATCACCAACCACGGCATACCGTCGGTGGTTATGGACCGTATGATCACCGCTGTCAAGTCCTTCCACGAGCAGCCGACAATGGTCAAAGCCCAGTTCTACCGTAGAGGGAGCGGCCTAGGTGTGTCATATTTCTCCAACGTCGACCTGTACAAGGCCAAAGCTGCCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

148

Amino Acids

16.29

Weight (kDa)

6.17

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 61 - 139 4.8e-17 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 387
AccI GTMKAC 3 cut(s) 90, 234, 417
AciI CCGC 3 cut(s) 5, 324, 387
AcuI CTGAAG 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 4 cut(s) 38, 70, 437, 444
AluI AGCT 4 cut(s) 38, 70, 437, 444
Alw26I GTCTC 1 cut(s) 104
Ama87I CYCGRG 2 cut(s) 94, 134
AoxI GGCC 3 cut(s) 82, 388, 429
ApeKI GCWGC 4 cut(s) 151, 255, 346, 437
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
Asp700I GAANNNNTTC 1 cut(s) 53
AspA2I CCTAGG 1 cut(s) 391
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 271, 313
AvaI CYCGRG 2 cut(s) 94, 134
AvaII GGWCC 1 cut(s) 310
AvrII CCTAGG 1 cut(s) 391
BauI CACGAG 1 cut(s) 341
BbvI GCAGC 4 cut(s) 163, 242, 358, 424
BccI CCATC 1 cut(s) 236
BceAI ACGGC 2 cut(s) 233, 304
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 2 cut(s) 392, 445
BfoI RGCGCY 1 cut(s) 249
BisI GCNGC 6 cut(s) 6, 152, 256, 347, 388, 438
BlnI CCTAGG 1 cut(s) 391
BlsI GCNGC 6 cut(s) 7, 153, 257, 348, 389, 439
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 2 cut(s) 94, 134
BmgT120I GGNCC 1 cut(s) 310
BmrI ACTGGG 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 361
BoxI GACNNNNGTC 2 cut(s) 96, 356
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 286, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse1I ACTGG 1 cut(s) 367
BseDI CCNNGG 2 cut(s) 286, 391
BseLI CCNNNNNNNGG 1 cut(s) 427
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 4 cut(s) 163, 242, 358, 424
BshFI GGCC 3 cut(s) 84, 390, 431
BsiHKCI CYCGRG 2 cut(s) 94, 134
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 3 cut(s) 84, 390, 431
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 2 cut(s) 94, 134
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 3 cut(s) 214, 276, 318
BspACI CCGC 3 cut(s) 5, 324, 387
BspANI GGCC 3 cut(s) 84, 390, 431
BspTNI GGTCTC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 387
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 286, 391
BssMI GATC 3 cut(s) 214, 276, 318
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 391
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 297, 314, 377
BstACI GRCGYC 1 cut(s) 171
BstAUI TGTACA 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 442
BstDSI CCRYGG 1 cut(s) 286
BstENI CCTNNNNNAGG 1 cut(s) 425
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 3 cut(s) 217, 279, 321
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 3 cut(s) 214, 276, 318
BstMWI GCNNNNNNNGC 3 cut(s) 151, 252, 437
BstPAI GACNNNNGTC 2 cut(s) 96, 356
BstV1I GCAGC 4 cut(s) 163, 242, 358, 424
BsuRI GGCC 3 cut(s) 84, 390, 431
BtgI CCRYGG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 442
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 424
CviQI GTAC 1 cut(s) 424
DpnI GATC 3 cut(s) 216, 278, 320
DpnII GATC 3 cut(s) 214, 276, 318
Eco130I CCWWGG 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 2 cut(s) 94, 134
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaiI YATR 5 cut(s) 30, 293, 308, 317, 403
FbaI TGATCA 1 cut(s) 318
FblI GTMKAC 3 cut(s) 90, 234, 417
Fnu4HI GCNGC 6 cut(s) 6, 152, 256, 347, 388, 438
Fsp4HI GCNGC 6 cut(s) 6, 152, 256, 347, 388, 438
FspBI CTAG 2 cut(s) 392, 445
GlaI GCGC 1 cut(s) 247
GluI GCNGC 6 cut(s) 6, 152, 256, 347, 388, 438
HaeII RGCGCY 1 cut(s) 249
HaeIII GGCC 3 cut(s) 84, 390, 431
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 248
Hin1I GRCGYC 1 cut(s) 171
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HincII GTYRAC 3 cut(s) 91, 235, 418
HindII GTYRAC 3 cut(s) 91, 235, 418
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 3 cut(s) 62, 75, 92
HphI GGTGA 2 cut(s) 271, 313
Hpy166II GTNNAC 3 cut(s) 91, 235, 418
Hpy188I TCNGA 2 cut(s) 202, 214
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 3 cut(s) 91, 235, 418
Hpy99I CGWCG 4 cut(s) 92, 236, 301, 419
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 3 cut(s) 297, 314, 377
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 2 cut(s) 151, 258
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 252, 437
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 171
HspAI GCGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 3 cut(s) 214, 276, 318
LmnI GCTCC 1 cut(s) 384
LpnPI CCDG 4 cut(s) 8, 287, 380, 434
Lsp1109I GCAGC 4 cut(s) 163, 242, 358, 424
MaeI CTAG 2 cut(s) 392, 445
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 138
MalI GATC 3 cut(s) 216, 278, 320
MbiI CCGCTC 1 cut(s) 387
MboI GATC 3 cut(s) 214, 276, 318
MboII GAAGA 2 cut(s) 53, 262
MluCI AATT 1 cut(s) 53
MlyI GAGTC 3 cut(s) 71, 84, 86
MmeI TCCRAC 2 cut(s) 225, 435
MnlI CCTC 5 cut(s) 95, 115, 123, 215, 374
MroXI GAANNNNTTC 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 151, 252, 437
NdeII GATC 3 cut(s) 214, 276, 318
PaeR7I CTCGAG 1 cut(s) 134
PceI AGGCCT 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 6 cut(s) 7, 153, 257, 348, 389, 439
PleI GAGTC 3 cut(s) 70, 83, 86
PpsI GAGTC 3 cut(s) 70, 83, 86
PshAI GACNNNNGTC 2 cut(s) 96, 356
PspPI GGNCC 1 cut(s) 310
PspXI VCTCGAGB 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SalI GTCGAC 3 cut(s) 89, 233, 416
SatI GCNGC 6 cut(s) 6, 152, 256, 347, 388, 438
Sau3AI GATC 3 cut(s) 214, 276, 318
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 3 cut(s) 71, 84, 86
SetI ASST 9 cut(s) 40, 72, 198, 207, 397, 417, 423, 439, 446
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 310
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 53
SseBI AGGCCT 1 cut(s) 84
SsiI CCGC 3 cut(s) 5, 324, 387
SspI AATATT 1 cut(s) 13
SspMI CTAG 2 cut(s) 392, 445
StuI AGGCCT 1 cut(s) 84
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 3 cut(s) 297, 314, 377
TaiI ACGT 1 cut(s) 417
TaqI TCGA 5 cut(s) 90, 135, 192, 234, 417
TaqII GACCGA 1 cut(s) 48
TasI AATT 1 cut(s) 53
TatI WGTACW 1 cut(s) 423
TauI GCSGC 2 cut(s) 8, 390
TseI GCWGC 4 cut(s) 151, 255, 346, 437
Tth111I GACNNNGTC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 310
XagI CCTNNNNNAGG 1 cut(s) 425
XhoI CTCGAG 1 cut(s) 134
XmaJI CCTAGG 1 cut(s) 391
XmiI GTMKAC 3 cut(s) 90, 234, 417
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 2 cut(s) 392, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.