Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000845

Physical Location & Seq

Genomic Coordinates Reverse (-)

22050349 .. 22050921

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1136600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTCAAATCCTCAACCAGGACCAAGCCCGAGTCGACTCAATCCACTCCCTATTTCAACACCAATAAATCACCATCCACAACCACGGTCGGTAAACCCCATCCATCCGCCGCCGCCACCATCCCCGCCAAGTCCGGAAGCGTACTGGGCTCGGGCAATTACATTGTCAACGTGGGTCTGGGCTCACCCAAGAAGCAGCTTTCCCTCATTTTCGACACAGGCAGCGATCTAACGTGGACCCAATGCCGCCCATGTGCTGGTTCGTGTTACGACCAGAAGGAGCCCATCTTTGATCCCGCAACCTCCGCCTCATACGTTAATGTCTCATGCAATTCTGCCACATGTTCCCAGCTGGCGTCAGCCACGGGATACAACCCCCGCGCTGCTACACTTCCACATGCATCTACACCATTGGGTACGGAGACCGGTCCTTCTCTCCGTCGGATATTTCGGGAAAGAGCGACTGAGCCTGACGTCGACGGATGTTTTTTGATGGGTTTTTGTTCGGATGCGGCCAGAACAACCAGGGCCATTTCGGGGTGCCGCCGGTTTGCTCGGTCTTGGCCGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

191

Amino Acids

20.1

Weight (kDa)

9.24

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	53 - 108	5.9e-08	Eukaryotic aspartyl protease
TAXi_N	PF14543	54 - 122	3.4e-22	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10770
fragaria_vesca	FvH4_2g41370 FvH4_4g08280 FvH4_6g44450
malus_domestica	MD08G1050600.v1.1 MD08G1050700.v1.1 MD08G1050900.v1.1 MD08G1051100.v1.1 MD14G1136600.v1.1 MD14G1136700.v1.1 MD15G1044000.v1.1 MD15G1044100.v1.1
prunus_persica	Prupe.1G087300_v2.0.a1 Prupe.1G397600_v2.0.a1 Prupe.1G397700_v2.0.a1 Prupe.1G397900_v2.0.a1 Prupe.1G398000_v2.0.a1 Prupe.1G398100_v2.0.a1 Prupe.1G398200_v2.0.a1 Prupe.4G162100_v2.0.a1
pyrus_communis	pycom02g13170 pycom08g04190 pycom08g04220 pycom08g04240 pycom08g04300 pycom15g04100 pycom15g04110
rosa_chinensis	RchiOBHm_Chr1g0357381 RchiOBHm_Chr4g0402501 RchiOBHm_Chr4g0402511 RchiOBHm_Chr4g0402551 RchiOBHm_Chr6g0299111
rosa_laevigata	RLG00000009069 RLG00000009072 RLG00000011461 RLG00000028021 RLG00000030536
rosa_roxburghii	Rroxscaffold_4G00298770 Rroxscaffold_5G00347200 Rroxscaffold_5G00347210 Rroxscaffold_5G00347230
rosa_rugosa	Rorug01G0256500 Rorug04G0035800 Rorug04G0035900 Rorug04G0036200 Rorug04G0036400 Rorug06G0285400
rosa_samantha	Rh1AG270500 Rh1CG033100 Rh1DG037400 Rh4BG105800 Rh4BG106200 Rh4CG120600 Rh4DG105300 Rh4DG105500 Rh4DG105800 Rh5BG409700 Rh5CG434500 Rh6AG396300 Rh6CG410900 Rh6DG397500
rosa_wichuraiana	Rw0G014980 Rw1G023920 Rw1G023930 Rw4G009090 Rw5G037460 Rw6G034700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	540
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccI	GTMKAC	2 cut(s)	35, 477
AccII	CGCG	1 cut(s)	381
AccIII	TCCGGA	1 cut(s)	134
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	2 cut(s)	513, 563
AcyI	GRCGYC	2 cut(s)	356, 474
AfaI	GTAC	2 cut(s)	144, 418
AfiI	CCNNNNNNNGG	3 cut(s)	18, 257, 537
AflIII	ACRYGT	1 cut(s)	341
AgeI	ACCGGT	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	2 cut(s)	17, 524
AluBI	AGCT	2 cut(s)	199, 352
AluI	AGCT	2 cut(s)	199, 352
Alw26I	GTCTC	2 cut(s)	328, 416
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	2 cut(s)	29, 151
Aor13HI	TCCGGA	1 cut(s)	134
AoxI	GGCC	3 cut(s)	513, 528, 563
ApeKI	GCWGC	3 cut(s)	196, 222, 383
AsiGI	ACCGGT	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	4 cut(s)	21, 237, 428, 528
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	63, 177
AvaI	CYCGRG	2 cut(s)	29, 151
AvaII	GGWCC	3 cut(s)	21, 237, 428
BanI	GGYRCC	1 cut(s)	540
BanII	GRGCYC	3 cut(s)	152, 185, 285
BbvI	GCAGC	3 cut(s)	208, 234, 370
BccI	CCATC	6 cut(s)	82, 108, 112, 128, 293, 487
BciT130I	CCWGG	2 cut(s)	19, 526
BciVI	GTATCC	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	328, 416
BfuI	GTATCC	1 cut(s)	362
BisI	GCNGC	8 cut(s)	111, 114, 197, 223, 247, 384, 513, 544
BlsI	GCNGC	8 cut(s)	112, 115, 198, 224, 248, 385, 514, 545
Bme1390I	CCNGG	3 cut(s)	19, 526, 567
Bme18I	GGWCC	3 cut(s)	21, 237, 428
BmeT110I	CYCGRG	2 cut(s)	29, 151
BmgT120I	GGNCC	4 cut(s)	21, 237, 428, 528
BmiI	GGNNCC	3 cut(s)	239, 282, 542
BmrFI	CCNGG	3 cut(s)	19, 526, 567
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	410, 499
BmuI	ACTGGG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	567
BsaHI	GRCGYC	2 cut(s)	356, 474
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	3 cut(s)	84, 363, 525
BsaWI	WCCGGW	2 cut(s)	134, 425
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 257, 537
Bse118I	RCCGGY	2 cut(s)	425, 546
Bse1I	ACTGG	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	19, 526
BseDI	CCNNGG	3 cut(s)	84, 363, 525
BseGI	GGATG	6 cut(s)	74, 100, 104, 120, 488, 514
BseLI	CCNNNNNNNGG	3 cut(s)	18, 257, 537
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	208, 234, 370
BseYI	CCCAGC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	515, 530, 565
BshNI	GGYRCC	1 cut(s)	540
BshTI	ACCGGT	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	29, 151
BsiSI	CCGG	4 cut(s)	135, 426, 547, 566
BslI	CCNNNNNNNGG	3 cut(s)	18, 257, 537
BsmAI	GTCTC	2 cut(s)	328, 416
BsnI	GGCC	3 cut(s)	515, 530, 565
Bso31I	GGTCTC	1 cut(s)	416
BsoBI	CYCGRG	2 cut(s)	29, 151
Bsp1286I	GDGCHC	3 cut(s)	152, 185, 285
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	226, 292
BspANI	GGCC	3 cut(s)	515, 530, 565
BspCNI	CTCAG	1 cut(s)	457
BspEI	TCCGGA	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	3 cut(s)	239, 282, 542
BspPI	GGATC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	416
BsrFI	RCCGGY	2 cut(s)	425, 546
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	2 cut(s)	425, 546
BssECI	CCNNGG	3 cut(s)	84, 363, 525
BssMI	GATC	2 cut(s)	226, 292
BssNI	GRCGYC	2 cut(s)	356, 474
Bst2UI	CCWGG	2 cut(s)	19, 526
Bst4CI	ACNGT	1 cut(s)	88
BstACI	GRCGYC	2 cut(s)	356, 474
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	2 cut(s)	84, 363
BstENI	CCTNNNNNAGG	1 cut(s)	16
BstF5I	GGATG	6 cut(s)	74, 100, 104, 120, 488, 514
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	2 cut(s)	229, 295
BstMAI	GTCTC	2 cut(s)	328, 416
BstMBI	GATC	2 cut(s)	226, 292
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 305
BstNI	CCWGG	2 cut(s)	19, 526
BstNSI	RCATGY	2 cut(s)	345, 401
BstSCI	CCNGG	3 cut(s)	17, 524, 565
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	208, 234, 370
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	515, 530, 565
BtgI	CCRYGG	2 cut(s)	84, 363
BtsCI	GGATG	6 cut(s)	74, 100, 104, 120, 488, 514
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	1 cut(s)	383
Cfr10I	RCCGGY	2 cut(s)	425, 546
Cfr13I	GGNCC	4 cut(s)	21, 237, 428, 528
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	143, 417
CspAI	ACCGGT	1 cut(s)	425
CviAII	CATG	4 cut(s)	252, 327, 342, 398
CviQI	GTAC	2 cut(s)	143, 417
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	228, 294
DpnII	GATC	2 cut(s)	226, 292
EaeI	YGGCCR	2 cut(s)	513, 563
EciI	GGCGGA	2 cut(s)	97, 295
Eco24I	GRGCYC	3 cut(s)	152, 185, 285
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	3 cut(s)	21, 237, 428
Eco88I	CYCGRG	2 cut(s)	29, 151
EcoNI	CCTNNNNNAGG	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	17, 524
EcoT22I	ATGCAT	1 cut(s)	403
EcoT38I	GRGCYC	3 cut(s)	152, 185, 285
FaeI	CATG	4 cut(s)	255, 330, 345, 401
FaiI	YATR	5 cut(s)	253, 313, 328, 343, 399
FatI	CATG	4 cut(s)	251, 326, 341, 397
FauI	CCCGC	3 cut(s)	133, 304, 386
FblI	GTMKAC	2 cut(s)	35, 477
Fnu4HI	GCNGC	8 cut(s)	111, 114, 197, 223, 247, 384, 513, 544
FokI	GGATG	6 cut(s)	61, 87, 91, 107, 495, 521
FriOI	GRGCYC	3 cut(s)	152, 185, 285
Fsp4HI	GCNGC	8 cut(s)	111, 114, 197, 223, 247, 384, 513, 544
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	8 cut(s)	111, 114, 197, 223, 247, 384, 513, 544
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	3 cut(s)	515, 530, 565
HapII	CCGG	4 cut(s)	135, 426, 547, 566
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	2 cut(s)	356, 474
Hin1II	CATG	4 cut(s)	255, 330, 345, 401
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	3 cut(s)	36, 169, 478
HindII	GTYRAC	3 cut(s)	36, 169, 478
HinfI	GANTC	2 cut(s)	32, 37
HpaII	CCGG	4 cut(s)	135, 426, 547, 566
HphI	GGTGA	2 cut(s)	63, 177
Hpy166II	GTNNAC	5 cut(s)	36, 95, 169, 237, 478
Hpy188I	TCNGA	2 cut(s)	444, 508
Hpy188III	TCNNGA	2 cut(s)	135, 452
Hpy8I	GTNNAC	5 cut(s)	36, 95, 169, 237, 478
Hpy99I	CGWCG	3 cut(s)	444, 479, 482
HpyAV	CCTTC	2 cut(s)	271, 441
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	4 cut(s)	171, 233, 315, 474
HpyCH4V	TGCA	2 cut(s)	330, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 305
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	4 cut(s)	171, 233, 315, 474
Hsp92I	GRCGYC	2 cut(s)	356, 474
Hsp92II	CATG	4 cut(s)	255, 330, 345, 401
HspAI	GCGC	1 cut(s)	381
Kpn2I	TCCGGA	1 cut(s)	134
Kzo9I	GATC	2 cut(s)	226, 292
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	3 cut(s)	208, 234, 370
LweI	GCATC	2 cut(s)	410, 499
MaeII	ACGT	4 cut(s)	171, 233, 315, 474
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	228, 294
MboI	GATC	2 cut(s)	226, 292
MhlI	GDGCHC	3 cut(s)	152, 185, 285
MluCI	AATT	2 cut(s)	157, 331
MlyI	GAGTC	2 cut(s)	31, 41
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	4 cut(s)	22, 215, 313, 319
Mph1103I	ATGCAT	1 cut(s)	403
MroI	TCCGGA	1 cut(s)	134
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	4 cut(s)	135, 426, 547, 566
MspR9I	CCNGG	3 cut(s)	19, 526, 567
MvaI	CCWGG	2 cut(s)	19, 526
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	147, 305
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	2 cut(s)	226, 292
NlaIII	CATG	4 cut(s)	255, 330, 345, 401
NlaIV	GGNNCC	3 cut(s)	239, 282, 542
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	2 cut(s)	345, 401
PciI	ACATGT	1 cut(s)	341
PflMI	CCANNNNNTGG	1 cut(s)	257
PinAI	ACCGGT	1 cut(s)	425
PkrI	GCNGC	8 cut(s)	112, 115, 198, 224, 248, 385, 514, 545
PleI	GAGTC	2 cut(s)	31, 40
PpsI	GAGTC	2 cut(s)	31, 40
PscI	ACATGT	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	17, 524
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	2 cut(s)	17, 524
PspN4I	GGNNCC	3 cut(s)	239, 282, 542
PspPI	GGNCC	4 cut(s)	21, 237, 428, 528
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	2 cut(s)	144, 418
RsaNI	GTAC	2 cut(s)	143, 417
SalI	GTCGAC	2 cut(s)	34, 476
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	8 cut(s)	111, 114, 197, 223, 247, 384, 513, 544
Sau3AI	GATC	2 cut(s)	226, 292
Sau96I	GGNCC	4 cut(s)	21, 237, 428, 528
SchI	GAGTC	2 cut(s)	31, 41
ScrFI	CCNGG	3 cut(s)	19, 526, 567
SduI	GDGCHC	3 cut(s)	152, 185, 285
SetI	ASST	7 cut(s)	174, 201, 236, 305, 318, 354, 477
SfaNI	GCATC	2 cut(s)	410, 499
SgrDI	CGTCGACG	1 cut(s)	476
SinI	GGWCC	3 cut(s)	21, 237, 428
Sse9I	AATT	2 cut(s)	157, 331
StyD4I	CCNGG	3 cut(s)	17, 524, 565
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	4 cut(s)	174, 236, 318, 477
TaqI	TCGA	3 cut(s)	35, 213, 477
TaqII	GACCGA	1 cut(s)	546
TasI	AATT	2 cut(s)	157, 331
TauI	GCSGC	5 cut(s)	113, 116, 249, 515, 546
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	3 cut(s)	196, 222, 383
TspGWI	ACGGA	3 cut(s)	428, 434, 495
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	3 cut(s)	21, 237, 428
XagI	CCTNNNNNAGG	1 cut(s)	16
XceI	RCATGY	2 cut(s)	345, 401
XmiI	GTMKAC	2 cut(s)	35, 477
ZraI	GACGTC	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.