Rh4BG106200

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000845
Physical Location & Seq
Forward (+)
18213061 .. 18213900
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG106200.1

Sequence Viewer

Length: 840 bp
ATGCATGCAGAATTCAACCAATGTTTAGCAGACACATGCCTATACGCCATAGAGTACGGAGACTCATCCTATACCATTGGATTATTCGCCACAGACAAGCTAACCTTAACTCCAAAAGACGTGTTCGATGGGTTCCTCTTTGGCTGCGGCCAACAAAACGAAGGCTTATTCAGTGACTCGGCCGGTATACTTGGTCTCTCCCGCAACAAGTTCTCCATCGTTGAACAAACCGCACAAAAGTACAACCGCTTCTTCTCCTACTGTCTGCCACCAACCGCAAGCTCAACTGGTTACCTCAGCTTCGGCGCACCCGATGGAGCTTCCAATGCTTCTATAAAATACACACGGCTCACTACTTTATCCTCGAGCTCGGTGTTTTACGACATAGACTTGGCTGGCATCAATGTGAATGGACAAAAGCTCTCAATTCCTGCTTCGGTGTTTTCGTCGCCGGGGACAATCATCGACTCCGGGACAGTCATCTCGCGGCTGCCGCCCACAGCGTATACCGCTTTGCGGGATGCGTTTCGGGCAGCGATGACAAGCTATCCGTTAGTTCCGGGACAGAGTAAGCTCCTAGATACATGCTATGACCTTAGTAGCTATCCAAACGTGACGTATCCGAAAATAGAGTTTGTGTTTGGCGACGGGGTTACATTGGAATTGGACACAACCGGAATTGTCTACTTTGTCAACGGTTTGAAGCAGGTTTGCTTGGCTTTTGCTGGGAATGATGATCCTAACGACATTGTGATTTTCGGGAATACTCAGCAGAAGAATATGGAGGTGCTGTATGACGTTGCCGGAGGGAGAGTCGGATTTGCTCCCGGTGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

279

Amino Acids

29.95

Weight (kDa)

4.53

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 6 - 102 1.1e-26 Xylanase inhibitor N-terminal
Asp PF00026 16 - 276 7.6e-18 Eukaryotic aspartyl protease
TAXi_C PF14541 127 - 275 7.1e-30 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 697
AccI GTMKAC 3 cut(s) 187, 506, 684
AccII CGCG 1 cut(s) 487
AciI CCGC 9 cut(s) 147, 202, 231, 247, 276, 487, 494, 510, 517
AclWI GGATC 1 cut(s) 731
AcoI YGGCCR 2 cut(s) 148, 180
AcsI RAATTY 1 cut(s) 11
AfaI GTAC 2 cut(s) 56, 242
AfiI CCNNNNNNNGG 1 cut(s) 516
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 3 cut(s) 16, 224, 703
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 9 cut(s) 100, 282, 300, 320, 369, 421, 546, 574, 603
AluI AGCT 9 cut(s) 100, 282, 300, 320, 369, 421, 546, 574, 603
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 2 cut(s) 54, 200
AlwI GGATC 1 cut(s) 731
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 2 cut(s) 148, 180
ApeKI GCWGC 3 cut(s) 144, 490, 533
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 1 cut(s) 308
AsuC2I CCSGG 4 cut(s) 453, 472, 561, 828
AvaI CYCGRG 1 cut(s) 364
BanII GRGCYC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 233, 265
Bbv12I GWGCWC 1 cut(s) 371
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 3 cut(s) 131, 477, 545
BccI CCATC 3 cut(s) 122, 224, 308
BceAI ACGGC 1 cut(s) 362
BciVI GTATCC 1 cut(s) 630
BcnI CCSGG 4 cut(s) 453, 472, 561, 828
BcoDI GTCTC 2 cut(s) 54, 200
BfaI CTAG 1 cut(s) 578
BfuAI ACCTGC 1 cut(s) 697
BfuI GTATCC 1 cut(s) 630
BisI GCNGC 6 cut(s) 145, 148, 488, 491, 494, 534
BlsI GCNGC 6 cut(s) 146, 149, 489, 492, 495, 535
Bme1390I CCNGG 4 cut(s) 453, 472, 561, 828
BmeT110I CYCGRG 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 4 cut(s) 453, 472, 561, 828
BmsI GCATC 2 cut(s) 408, 511
Bpu10I CCTNAGC 1 cut(s) 296
BpuMI CCSGG 4 cut(s) 453, 472, 561, 828
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 452
BsaWI WCCGGW 1 cut(s) 674
BsaXI ACNNNNNCTCC 8 cut(s) 94, 124, 197, 227, 776, 798, 806, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 516
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 2 cut(s) 65, 526
BseLI CCNNNNNNNGG 1 cut(s) 516
BseMII CTCAG 2 cut(s) 310, 782
BseNI ACTGG 1 cut(s) 292
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 3 cut(s) 131, 477, 545
BseYI CCCAGC 1 cut(s) 725
Bsh1236I CGCG 1 cut(s) 487
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 150, 182
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 7 cut(s) 183, 452, 471, 560, 675, 804, 828
BslFI GGGAC 3 cut(s) 469, 487, 576
BslI CCNNNNNNNGG 1 cut(s) 516
BsmAI GTCTC 2 cut(s) 54, 200
BsmFI GGGAC 3 cut(s) 469, 487, 576
BsnI GGCC 2 cut(s) 150, 182
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 1 cut(s) 736
BspACI CCGC 9 cut(s) 147, 202, 231, 247, 276, 487, 494, 510, 517
BspANI GGCC 2 cut(s) 150, 182
BspCNI CTCAG 2 cut(s) 309, 781
BspFNI CGCG 1 cut(s) 487
BspLI GGNNCC 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 1 cut(s) 731
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 1 cut(s) 736
BssNAI GTATAC 2 cut(s) 188, 507
Bst1107I GTATAC 2 cut(s) 188, 507
Bst4CI ACNGT 3 cut(s) 263, 478, 698
BstC8I GCNNGC 3 cut(s) 6, 280, 397
BstDEI CTNAG 3 cut(s) 296, 596, 768
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 2 cut(s) 65, 526
BstFNI CGCG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 739
BstMAI GTCTC 2 cut(s) 54, 200
BstMBI GATC 1 cut(s) 736
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 4 cut(s) 326, 493, 509, 530
BstNSI RCATGY 3 cut(s) 8, 39, 588
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 4 cut(s) 451, 470, 559, 826
BstUI CGCG 1 cut(s) 487
BstV1I GCAGC 3 cut(s) 131, 477, 545
BstZ17I GTATAC 2 cut(s) 188, 507
BstZI CGGCCG 1 cut(s) 180
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 2 cut(s) 150, 182
BtgZI GCGATG 1 cut(s) 551
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 65, 526
BtsIMutI CAGTG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 3 cut(s) 6, 280, 397
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 182
Csp6I GTAC 2 cut(s) 55, 241
CviAII CATG 3 cut(s) 5, 36, 585
CviQI GTAC 2 cut(s) 55, 241
DdeI CTNAG 3 cut(s) 296, 596, 768
DpnI GATC 1 cut(s) 738
DpnII GATC 1 cut(s) 736
EaeI YGGCCR 2 cut(s) 148, 180
EagI CGGCCG 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 369
EclXI CGGCCG 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 200
Eco52I CGGCCG 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 364
Eco91I GGTNACC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 369
EcoO65I GGTNACC 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 11
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 371
FaeI CATG 3 cut(s) 8, 39, 588
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 3 cut(s) 469, 487, 576
FatI CATG 3 cut(s) 4, 35, 584
FauI CCCGC 2 cut(s) 209, 510
FblI GTMKAC 3 cut(s) 187, 506, 684
Fnu4HI GCNGC 6 cut(s) 145, 148, 488, 491, 494, 534
FokI GGATG 2 cut(s) 52, 533
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 6 cut(s) 145, 148, 488, 491, 494, 534
FspBI CTAG 1 cut(s) 578
GlaI GCGC 1 cut(s) 307
GluI GCNGC 6 cut(s) 145, 148, 488, 491, 494, 534
GsaI CCCAGC 1 cut(s) 729
HaeIII GGCC 2 cut(s) 150, 182
HapII CCGG 7 cut(s) 183, 452, 471, 560, 675, 804, 828
HhaI GCGC 1 cut(s) 308
Hin1II CATG 3 cut(s) 8, 39, 588
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HinfI GANTC 4 cut(s) 62, 176, 467, 813
HpaII CCGG 7 cut(s) 183, 452, 471, 560, 675, 804, 828
Hpy166II GTNNAC 4 cut(s) 188, 507, 685, 694
Hpy188I TCNGA 2 cut(s) 624, 818
Hpy188III TCNNGA 1 cut(s) 760
Hpy8I GTNNAC 4 cut(s) 188, 507, 685, 694
Hpy99I CGWCG 2 cut(s) 451, 650
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 3 cut(s) 263, 478, 698
HpyCH4IV ACGT 4 cut(s) 120, 612, 617, 798
HpyCH4V TGCA 2 cut(s) 4, 8
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 493, 509, 530
HpyF3I CTNAG 3 cut(s) 296, 596, 768
HpySE526I ACGT 4 cut(s) 120, 612, 617, 798
Hsp92II CATG 3 cut(s) 8, 39, 588
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 736
LmnI GCTCC 3 cut(s) 317, 579, 829
Lsp1109I GCAGC 3 cut(s) 131, 477, 545
LweI GCATC 2 cut(s) 408, 511
MaeI CTAG 1 cut(s) 578
MaeII ACGT 4 cut(s) 120, 612, 617, 798
MaeIII GTNAC 4 cut(s) 173, 290, 613, 652
MalI GATC 1 cut(s) 738
MboI GATC 1 cut(s) 736
MboII GAAGA 2 cut(s) 244, 787
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 4 cut(s) 11, 426, 662, 678
MlyI GAGTC 4 cut(s) 56, 170, 461, 822
MmeI TCCRAC 1 cut(s) 796
MnlI CCTC 5 cut(s) 146, 305, 373, 778, 800
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 404
MspI CCGG 7 cut(s) 183, 452, 471, 560, 675, 804, 828
MspR9I CCNGG 4 cut(s) 453, 472, 561, 828
MvnI CGCG 1 cut(s) 487
MwoI GCNNNNNNNGC 4 cut(s) 326, 493, 509, 530
NciI CCSGG 4 cut(s) 453, 472, 561, 828
NdeII GATC 1 cut(s) 736
NlaIII CATG 3 cut(s) 8, 39, 588
NlaIV GGNNCC 1 cut(s) 134
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 173, 613
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 8, 39, 588
PaeI GCATGC 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 364
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 443
PfoI TCCNGGA 2 cut(s) 470, 559
PkrI GCNGC 6 cut(s) 146, 149, 489, 492, 495, 535
PleI GAGTC 4 cut(s) 56, 170, 461, 821
PpsI GAGTC 4 cut(s) 56, 170, 461, 821
Psp124BI GAGCTC 1 cut(s) 371
PspEI GGTNACC 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 725
PspN4I GGNNCC 1 cut(s) 134
PspXI VCTCGAGB 1 cut(s) 364
RsaI GTAC 2 cut(s) 56, 242
RsaNI GTAC 2 cut(s) 55, 241
RseI CAYNNNNRTG 1 cut(s) 404
SacI GAGCTC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 6 cut(s) 145, 148, 488, 491, 494, 534
Sau3AI GATC 1 cut(s) 736
SchI GAGTC 4 cut(s) 56, 170, 461, 822
ScrFI CCNGG 4 cut(s) 453, 472, 561, 828
SduI GDGCHC 1 cut(s) 371
SfaNI GCATC 2 cut(s) 408, 511
Sfr274I CTCGAG 1 cut(s) 364
SlaI CTCGAG 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
SphI GCATGC 1 cut(s) 8
Sse9I AATT 4 cut(s) 11, 426, 662, 678
SsiI CCGC 9 cut(s) 147, 202, 231, 247, 276, 487, 494, 510, 517
SspMI CTAG 1 cut(s) 578
SstI GAGCTC 1 cut(s) 371
StyD4I CCNGG 4 cut(s) 451, 470, 559, 826
TaaI ACNGT 3 cut(s) 263, 478, 698
TaiI ACGT 4 cut(s) 123, 615, 620, 801
TaqI TCGA 3 cut(s) 126, 365, 465
TasI AATT 4 cut(s) 11, 426, 662, 678
TatI WGTACW 1 cut(s) 240
TauI GCSGC 3 cut(s) 150, 490, 496
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 173, 613
TseI GCWGC 3 cut(s) 144, 490, 533
Tsp45I GTSAC 2 cut(s) 173, 613
TspGWI ACGGA 2 cut(s) 72, 540
TspRI CASTG 1 cut(s) 178
XapI RAATTY 1 cut(s) 11
XceI RCATGY 3 cut(s) 8, 39, 588
XhoI CTCGAG 1 cut(s) 364
XmiI GTMKAC 3 cut(s) 187, 506, 684
XspI CTAG 1 cut(s) 578
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.