Rorug04G0036200

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000845
Physical Location & Seq
Reverse (-)
5392380 .. 5392979
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0036200.1

Sequence Viewer

Length: 423 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGATTAGTGCTAACATGCTTTATAAGCGGAGTAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTGCACTTCGGATGTTCATGTGCCCATGCAAAGATTAGGGCTTACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

140

Amino Acids

15.87

Weight (kDa)

9.82

Isoelectric Point (pI)

58.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 6.5e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 411
AciI CCGC 3 cut(s) 82, 339, 418
AclWI GGATC 1 cut(s) 188
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 348
AluBI AGCT 4 cut(s) 130, 193, 373, 398
AluI AGCT 4 cut(s) 130, 193, 373, 398
Alw21I GWGCWC 2 cut(s) 281, 375
Alw44I GTGCAC 1 cut(s) 277
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 411
ApaLI GTGCAC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 2 cut(s) 281, 300
BanII GRGCYC 2 cut(s) 256, 375
Bbv12I GWGCWC 2 cut(s) 281, 375
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 323
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 2 cut(s) 51, 418
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 2 cut(s) 52, 419
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 3 cut(s) 6, 155, 416
BmrFI CCNGG 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 374
BpuEI CTTGAG 2 cut(s) 107, 389
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseMII CTCAG 1 cut(s) 388
BseSI GKGCMC 2 cut(s) 281, 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 281, 375
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 412
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 4 cut(s) 256, 281, 300, 375
Bsp13I TCCGGA 1 cut(s) 411
Bsp143I GATC 3 cut(s) 106, 180, 210
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 3 cut(s) 82, 339, 418
BspCNI CTCAG 1 cut(s) 387
BspEI TCCGGA 1 cut(s) 411
BspLI GGNNCC 3 cut(s) 6, 155, 416
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 3 cut(s) 106, 180, 210
Bst4CI ACNGT 2 cut(s) 163, 347
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 3 cut(s) 109, 183, 213
BstMBI GATC 3 cut(s) 106, 180, 210
BstMWI GCNNNNNNNGC 2 cut(s) 79, 384
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 2 cut(s) 281, 300
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtsCI GGATG 2 cut(s) 37, 292
BveI ACCTGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 3 cut(s) 70, 293, 301
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 374
DpnI GATC 3 cut(s) 108, 182, 212
DpnII GATC 3 cut(s) 106, 180, 210
Ecl136II GAGCTC 1 cut(s) 373
Eco24I GRGCYC 2 cut(s) 256, 375
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 373
EcoO109I RGGNCCY 1 cut(s) 153
EcoT38I GRGCYC 2 cut(s) 256, 375
FaeI CATG 3 cut(s) 73, 296, 304
FaiI YATR 4 cut(s) 71, 78, 294, 302
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 69, 292, 300
Fnu4HI GCNGC 2 cut(s) 51, 418
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 375
Fsp4HI GCNGC 2 cut(s) 51, 418
GluI GCNGC 2 cut(s) 51, 418
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 2 cut(s) 54, 412
Hin1II CATG 3 cut(s) 73, 296, 304
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 2 cut(s) 54, 412
Hpy166II GTNNAC 3 cut(s) 93, 244, 279
Hpy188I TCNGA 3 cut(s) 111, 286, 328
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 412
Hpy8I GTNNAC 3 cut(s) 93, 244, 279
HpyCH4III ACNGT 2 cut(s) 163, 347
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 279, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 384
HpyF3I CTNAG 1 cut(s) 374
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 3 cut(s) 73, 296, 304
Kpn2I TCCGGA 1 cut(s) 411
Kzo9I GATC 3 cut(s) 106, 180, 210
LmnI GCTCC 2 cut(s) 127, 414
LpnPI CCDG 6 cut(s) 29, 67, 155, 203, 384, 397
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 341
MalI GATC 3 cut(s) 108, 182, 212
MboI GATC 3 cut(s) 106, 180, 210
MboII GAAGA 2 cut(s) 280, 283
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 4 cut(s) 256, 281, 300, 375
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 6 cut(s) 22, 29, 131, 171, 326, 382
MroI TCCGGA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 2 cut(s) 193, 420
MspI CCGG 2 cut(s) 54, 412
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 79, 384
NciI CCSGG 1 cut(s) 55
NdeII GATC 3 cut(s) 106, 180, 210
NlaIII CATG 3 cut(s) 73, 296, 304
NlaIV GGNNCC 3 cut(s) 6, 155, 416
NmuCI GTSAC 1 cut(s) 341
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 348
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 419
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
PsiI TTATAA 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 416
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 348
SacI GAGCTC 1 cut(s) 375
SatI GCNGC 2 cut(s) 51, 418
Sau3AI GATC 3 cut(s) 106, 180, 210
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 4 cut(s) 256, 281, 300, 375
SetI ASST 9 cut(s) 92, 132, 155, 174, 195, 228, 337, 375, 400
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 2 cut(s) 122, 368
SmoI CTYRAG 2 cut(s) 122, 368
SsiI CCGC 3 cut(s) 82, 339, 418
SstI GAGCTC 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 163, 347
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 1 cut(s) 117
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 281
VneI GTGCAC 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.