Rh4CG120600

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000845
Physical Location & Seq
Forward (+)
23090858 .. 23091697
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG120600.1

Sequence Viewer

Length: 840 bp
ATGCATGCAGAATTCAACAAATGTTTAGCAAACACATGCCTATACGCCGTAGGGTACGGAGACTCATCCTATACCATTGGATTTTTCGCCACAGACAAGCTGACCTTAACTCCAAACGATGTGTTCGATGGGTTCCTCTTTGGCTGCGGTCAACAAAACGAAGGCTTCATCAGTGGCTCAGCCGGTATACTTGGTCTCTCCCGCAACAAGTTCTCCATCGTTGAACAAACCGCACAAAAGTACAACCGCTTCTTCTCCTACTGTTTGCCACCAACCGCAAGCTCTACTGGTTACCTTAGCTTCGGCGCACCCGATGGAGCTTCCAATGCTGCTGTAAAATACACACGGCTCACTACTTTATCCTCGAGCTCAGTGTTTTACGGCATAGACTTGGTTGGCATCAATGTGAATGGACAAAAGCTCTCAATTCCTACTTCGGCGTTTTCGTCGCCAGGGACGATCATCGACTCAGGGACAGTCATCTCGCGGCTGGCGCCCACAGCATATACCACTTTGAGGGATGCGTTTCGGGCAGCGATGACAAGCTATCCGTTAGTTCCGGGACCGAGTAAGCTCCTAGATACATGCTACGACCTTAGTAGCTATCCAAATGTGACATATCCGAAAATAGAGTTTGTGTTTGGCGACGGGGTTACGTTGGAATTGGACGCAGCCGGAATTGTCTACTTTTTGAATGGTTTGAAGCAGGTTTGCTTGGCTTTTGCTGGGAATGATGATCCTAAAGACATTGTAATTTTCGGGAATACTCAGCAAAAGAATATGGAGGTGTTGTATGACGTTGCCGGAGGGAGAGTCGGATTTGCTCCCAGTGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

279

Amino Acids

29.74

Weight (kDa)

4.98

Isoelectric Point (pI)

30.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 6 - 102 3.8e-26 Xylanase inhibitor N-terminal
Asp PF00026 16 - 276 1.6e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 127 - 275 2.8e-29 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 697
AccB1I GGYRCC 1 cut(s) 493
AccI GTMKAC 2 cut(s) 187, 684
AccII CGCG 1 cut(s) 487
AciI CCGC 6 cut(s) 147, 202, 231, 247, 276, 487
AclWI GGATC 1 cut(s) 731
AcsI RAATTY 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 2 cut(s) 56, 242
AfiI CCNNNNNNNGG 1 cut(s) 516
AgsI TTSAA 4 cut(s) 16, 224, 694, 703
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 9 cut(s) 100, 282, 300, 320, 369, 421, 546, 574, 603
AluI AGCT 9 cut(s) 100, 282, 300, 320, 369, 421, 546, 574, 603
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 2 cut(s) 54, 200
AlwI GGATC 1 cut(s) 731
Ama87I CYCGRG 1 cut(s) 364
ApeKI GCWGC 4 cut(s) 144, 329, 533, 671
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 2 cut(s) 308, 496
AspS9I GGNCC 1 cut(s) 563
AsuC2I CCSGG 1 cut(s) 561
AvaI CYCGRG 1 cut(s) 364
AvaII GGWCC 1 cut(s) 563
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 371
BarI GAAGNNNNNNTAC 2 cut(s) 233, 265
Bbv12I GWGCWC 1 cut(s) 371
BbvI GCAGC 4 cut(s) 131, 316, 545, 683
BccI CCATC 3 cut(s) 122, 224, 308
BceAI ACGGC 3 cut(s) 32, 362, 397
BciT130I CCWGG 1 cut(s) 453
BcnI CCSGG 1 cut(s) 561
BcoDI GTCTC 2 cut(s) 54, 200
BfaI CTAG 1 cut(s) 578
BfoI RGCGCY 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 697
BisI GCNGC 5 cut(s) 145, 330, 488, 534, 672
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 5 cut(s) 146, 331, 489, 535, 673
Bme1390I CCNGG 2 cut(s) 453, 561
Bme18I GGWCC 1 cut(s) 563
BmeT110I CYCGRG 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 563
BmiI GGNNCC 3 cut(s) 134, 495, 564
BmrFI CCNGG 2 cut(s) 453, 561
BmrI ACTGGG 1 cut(s) 822
BmsI GCATC 2 cut(s) 408, 511
BmuI ACTGGG 1 cut(s) 822
Bpu10I CCTNAGC 1 cut(s) 296
Bpu1102I GCTNAGC 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 452
BsaXI ACNNNNNCTCC 8 cut(s) 94, 124, 197, 227, 776, 798, 806, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 516
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 292, 828
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 2 cut(s) 65, 526
BseLI CCNNNNNNNGG 1 cut(s) 516
BseMII CTCAG 4 cut(s) 192, 384, 483, 782
BseNI ACTGG 2 cut(s) 292, 828
BseXI GCAGC 4 cut(s) 131, 316, 545, 683
BseYI CCCAGC 1 cut(s) 725
Bsh1236I CGCG 1 cut(s) 487
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 4 cut(s) 183, 560, 675, 804
BslFI GGGAC 3 cut(s) 469, 487, 576
BslI CCNNNNNNNGG 1 cut(s) 516
BsmAI GTCTC 2 cut(s) 54, 200
BsmFI GGGAC 3 cut(s) 469, 487, 576
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 2 cut(s) 459, 736
Bsp1720I GCTNAGC 1 cut(s) 178
BspACI CCGC 6 cut(s) 147, 202, 231, 247, 276, 487
BspCNI CTCAG 4 cut(s) 191, 383, 482, 781
BspFNI CGCG 1 cut(s) 487
BspLI GGNNCC 3 cut(s) 134, 495, 564
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 2 cut(s) 292, 828
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 2 cut(s) 459, 736
BssNAI GTATAC 1 cut(s) 188
BssNI GRCGYC 1 cut(s) 494
Bst1107I GTATAC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 263, 478
BstACI GRCGYC 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 6, 280, 492
BstDEI CTNAG 6 cut(s) 178, 296, 370, 469, 596, 768
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 2 cut(s) 65, 526
BstFNI CGCG 1 cut(s) 487
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 2 cut(s) 308, 496
BstKTI GATC 2 cut(s) 462, 739
BstMAI GTCTC 2 cut(s) 54, 200
BstMBI GATC 2 cut(s) 459, 736
BstMWI GCNNNNNNNGC 4 cut(s) 326, 493, 500, 530
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 3 cut(s) 8, 39, 588
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 2 cut(s) 451, 559
BstUI CGCG 1 cut(s) 487
BstV1I GCAGC 4 cut(s) 131, 316, 545, 683
BstZ17I GTATAC 1 cut(s) 188
BtgZI GCGATG 1 cut(s) 551
BtsCI GGATG 2 cut(s) 65, 526
BtsIMutI CAGTG 3 cut(s) 178, 378, 835
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 3 cut(s) 6, 280, 492
CfoI GCGC 2 cut(s) 308, 496
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 563
CseI GACGC 1 cut(s) 677
Csp6I GTAC 2 cut(s) 55, 241
CviAII CATG 3 cut(s) 5, 36, 585
CviQI GTAC 2 cut(s) 55, 241
DdeI CTNAG 6 cut(s) 178, 296, 370, 469, 596, 768
DinI GGCGCC 1 cut(s) 495
DpnI GATC 2 cut(s) 461, 738
DpnII GATC 2 cut(s) 459, 736
Ecl136II GAGCTC 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 371
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 563
Eco53kI GAGCTC 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 364
Eco91I GGTNACC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 369
EcoO65I GGTNACC 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 371
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
FaeI CATG 3 cut(s) 8, 39, 588
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 3 cut(s) 469, 487, 576
FatI CATG 3 cut(s) 4, 35, 584
FauI CCCGC 1 cut(s) 209
FblI GTMKAC 2 cut(s) 187, 684
Fnu4HI GCNGC 5 cut(s) 145, 330, 488, 534, 672
FokI GGATG 2 cut(s) 52, 533
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 5 cut(s) 145, 330, 488, 534, 672
FspBI CTAG 1 cut(s) 578
GlaI GCGC 2 cut(s) 307, 495
GluI GCNGC 5 cut(s) 145, 330, 488, 534, 672
GsaI CCCAGC 1 cut(s) 729
HaeII RGCGCY 1 cut(s) 497
HapII CCGG 4 cut(s) 183, 560, 675, 804
HgaI GACGC 1 cut(s) 677
HhaI GCGC 2 cut(s) 308, 496
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 3 cut(s) 8, 39, 588
Hin6I GCGC 2 cut(s) 306, 494
HinP1I GCGC 2 cut(s) 306, 494
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HinfI GANTC 3 cut(s) 62, 467, 813
HpaII CCGG 4 cut(s) 183, 560, 675, 804
Hpy166II GTNNAC 3 cut(s) 152, 188, 685
Hpy188I TCNGA 2 cut(s) 624, 818
Hpy188III TCNNGA 1 cut(s) 760
Hpy8I GTNNAC 3 cut(s) 152, 188, 685
Hpy99I CGWCG 2 cut(s) 451, 650
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 263, 478
HpyCH4IV ACGT 2 cut(s) 656, 798
HpyCH4V TGCA 2 cut(s) 4, 8
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 493, 500, 530
HpyF3I CTNAG 6 cut(s) 178, 296, 370, 469, 596, 768
HpySE526I ACGT 2 cut(s) 656, 798
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 3 cut(s) 8, 39, 588
HspAI GCGC 2 cut(s) 306, 494
KasI GGCGCC 1 cut(s) 493
Kzo9I GATC 2 cut(s) 459, 736
LmnI GCTCC 3 cut(s) 317, 579, 829
Lsp1109I GCAGC 4 cut(s) 131, 316, 545, 683
LweI GCATC 2 cut(s) 408, 511
MaeI CTAG 1 cut(s) 578
MaeII ACGT 2 cut(s) 656, 798
MaeIII GTNAC 3 cut(s) 290, 613, 652
MalI GATC 2 cut(s) 461, 738
MboI GATC 2 cut(s) 459, 736
MboII GAAGA 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 5 cut(s) 11, 426, 662, 678, 753
Mly113I GGCGCC 1 cut(s) 494
MlyI GAGTC 3 cut(s) 56, 461, 822
MmeI TCCRAC 2 cut(s) 639, 796
MnlI CCTC 5 cut(s) 146, 373, 510, 778, 800
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 404
MspI CCGG 4 cut(s) 183, 560, 675, 804
MspR9I CCNGG 2 cut(s) 453, 561
MvaI CCWGG 1 cut(s) 453
MvnI CGCG 1 cut(s) 487
MwoI GCNNNNNNNGC 4 cut(s) 326, 493, 500, 530
NarI GGCGCC 1 cut(s) 494
NciI CCSGG 1 cut(s) 561
NdeII GATC 2 cut(s) 459, 736
NlaIII CATG 3 cut(s) 8, 39, 588
NlaIV GGNNCC 3 cut(s) 134, 495, 564
NmuCI GTSAC 1 cut(s) 613
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 8, 39, 588
PaeI GCATGC 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 364
PcsI WCGNNNNNNNCGW 4 cut(s) 123, 309, 443, 455
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 5 cut(s) 146, 331, 489, 535, 673
PleI GAGTC 3 cut(s) 56, 461, 821
PluTI GGCGCC 1 cut(s) 497
PpsI GAGTC 3 cut(s) 56, 461, 821
Psp124BI GAGCTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 451
PspEI GGTNACC 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 725
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 3 cut(s) 134, 495, 564
PspPI GGNCC 1 cut(s) 563
PspXI VCTCGAGB 1 cut(s) 364
RsaI GTAC 2 cut(s) 56, 242
RsaNI GTAC 2 cut(s) 55, 241
RseI CAYNNNNRTG 1 cut(s) 404
SacI GAGCTC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 5 cut(s) 145, 330, 488, 534, 672
Sau3AI GATC 2 cut(s) 459, 736
Sau96I GGNCC 1 cut(s) 563
SchI GAGTC 3 cut(s) 56, 461, 822
ScrFI CCNGG 2 cut(s) 453, 561
SduI GDGCHC 1 cut(s) 371
SfaNI GCATC 2 cut(s) 408, 511
SfoI GGCGCC 1 cut(s) 495
Sfr274I CTCGAG 1 cut(s) 364
SinI GGWCC 1 cut(s) 563
SlaI CTCGAG 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
SphI GCATGC 1 cut(s) 8
Sse9I AATT 5 cut(s) 11, 426, 662, 678, 753
SsiI CCGC 6 cut(s) 147, 202, 231, 247, 276, 487
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 1 cut(s) 578
SstI GAGCTC 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 451, 559
TaaI ACNGT 2 cut(s) 263, 478
TaiI ACGT 2 cut(s) 659, 801
TaqI TCGA 3 cut(s) 126, 365, 465
TaqII GACCGA 1 cut(s) 580
TasI AATT 5 cut(s) 11, 426, 662, 678, 753
TatI WGTACW 1 cut(s) 240
TauI GCSGC 1 cut(s) 490
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 3 cut(s) 178, 378, 835
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 4 cut(s) 144, 329, 533, 671
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 1 cut(s) 157
TspGWI ACGGA 2 cut(s) 72, 540
TspRI CASTG 3 cut(s) 178, 378, 835
VpaK11BI GGWCC 1 cut(s) 563
XapI RAATTY 1 cut(s) 11
XceI RCATGY 3 cut(s) 8, 39, 588
XhoI CTCGAG 1 cut(s) 364
XmiI GTMKAC 2 cut(s) 187, 684
XspI CTAG 1 cut(s) 578
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.