pycom02g13170

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000845
Physical Location & Seq
Forward (+)
9708959 .. 9709339
381 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13170.1

Sequence Viewer

Length: 201 bp
ATGATCAGTGGTGTCGGCACTGGATACCTCAGCTTCGGCAAAGGCGGCGGATCTTCCAACGCCGTGAAATTCACACCCCTCGCCGACGTCTCCCAAGGCGTGAAATTTACACAGGCCTTCAGCAATGACCTGGAGGATGGCAGGTGGCTCGAGCTCTTCGAACGTGTTGACGATGATTTCTTTGGATTTGGGAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

67

Amino Acids

7.11

Weight (kDa)

4.52

Isoelectric Point (pI)

15.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 132
AatII GACGTC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 132
AciI CCGC 2 cut(s) 45, 48
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 2 cut(s) 68, 104
AcuI CTGAAG 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 163
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 33, 154
AluI AGCT 2 cut(s) 33, 154
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 2 cut(s) 68, 104
AsuII TTCGAA 1 cut(s) 159
AvaI CYCGRG 1 cut(s) 149
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 17
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 94
BfuAI ACCTGC 1 cut(s) 132
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 25
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsnI GGCC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 3, 50
BspACI CCGC 2 cut(s) 45, 48
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 132
BspPI GGATC 1 cut(s) 58
BspQI GCTCTTC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 2 cut(s) 3, 50
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 87
BstBI TTCGAA 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 2 cut(s) 6, 53
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 2 cut(s) 3, 50
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 13, 18
BveI ACCTGC 1 cut(s) 132
CviJI RGCY 4 cut(s) 33, 116, 148, 154
CviKI_1 RGCY 4 cut(s) 33, 116, 148, 154
DdeI CTNAG 1 cut(s) 29
DpnI GATC 2 cut(s) 5, 52
DpnII GATC 2 cut(s) 3, 50
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 94
FaiI YATR 1 cut(s) 199
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 87, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 2 cut(s) 87, 163
Hsp92I GRCGYC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 50
LguI GCTCTTC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 6, 98, 116, 127, 143
MaeII ACGT 2 cut(s) 87, 163
MalI GATC 2 cut(s) 5, 52
MboI GATC 2 cut(s) 3, 50
MboII GAAGA 2 cut(s) 45, 148
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 68, 104
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 3 cut(s) 38, 89, 127
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 45
NdeII GATC 2 cut(s) 3, 50
NspV TTCGAA 1 cut(s) 159
PaeR7I CTCGAG 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 132
PceI AGGCCT 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PkrI GCNGC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspXI VCTCGAGB 1 cut(s) 149
PsuI RGATCY 1 cut(s) 50
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 161
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 2 cut(s) 3, 50
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 156
SetI ASST 7 cut(s) 30, 35, 90, 132, 146, 156, 166
Sfr274I CTCGAG 1 cut(s) 149
SfuI TTCGAA 1 cut(s) 159
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 68, 104
SseBI AGGCCT 1 cut(s) 116
SsiI CCGC 2 cut(s) 45, 48
SstI GAGCTC 1 cut(s) 156
StuI AGGCCT 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 94
TaiI ACGT 2 cut(s) 90, 166
TaqI TCGA 2 cut(s) 150, 159
TasI AATT 2 cut(s) 68, 104
TauI GCSGC 1 cut(s) 48
TscAI CASTG 2 cut(s) 13, 25
TspRI CASTG 2 cut(s) 13, 25
XapI RAATTY 2 cut(s) 68, 104
XhoI CTCGAG 1 cut(s) 149
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.