Rh4DG105500

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000845
Physical Location & Seq
Forward (+)
16222802 .. 16223644
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG105500.1

Sequence Viewer

Length: 843 bp
ATGAATGCAGAATCTGACAAATGCTTAGGAGACACATGCCAATATTCCGTGACGTACGGAGACTCATCTTACACCACTGGATATTTCGCCACAGACAAGCTGACCTTAACTCCTAACGACGTGTTCGATGGGTTCTTCTTCGGCTGCGGCCAAGAAAACGTAGGTTTCCACGATGGCTCAGCCGGTTTACTTGGTCTCTCCCTCAACAAGTTCTCCATCGTCGAACAAACCGCACAAAAGTACAGCCGCTTCTTCTCCTACTGTCTGCCACCAACCGCAAGCTCCACCGGTTACCTCAGCTTCGGCGCACCCAGTGGAGCTTCCAATGCTGCCGTAAAATACACGCGAATCGCTAACTTATCCTCGAGCTTAGAGCTTTACTGCCTAGACCTGGTTGGCATCAATCTGAATGGAAAAAAGCTCTCAATTCCTGCTTCGGTGTTTTCGTCGCCGGGGACGATCATCGACTCCGGGACGGTCATATCGCGGCTGCCGCCCACCGCGTATACCGCTTTGCGGGACGCGTTTCGGGCAGCGATGATAAGCTATCCGTTAGTTCCGGGGCCCGGAAAGCTCCTAGATACATGCTACGACCTTAGTGGCTATCCAACGGTGACGTATCCGAAAATAGAATTTGTGTTCGGCGACGGGGTTACGTTGGAATTGGACGCAACCGGCATTGTCTACCTTTTCGACGGTTCGAATAAGCAGGTTTGCTTGGCTTTTGCTGGGAATGATGATGCTAACGACATTGCGATTTTCGGGAATACTCAGCAGAAGAATATGGAGGTGTTGTATGACGTTGCCGGAGGGAGAGTTGGATTTGCTCCCGGCGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

280

Amino Acids

29.7

Weight (kDa)

4.53

Isoelectric Point (pI)

25.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 4 - 102 3.1e-25 Xylanase inhibitor N-terminal
Asp PF00026 14 - 277 1.1e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 127 - 276 2.1e-27 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 700
AccI GTMKAC 2 cut(s) 506, 684
AccII CGCG 4 cut(s) 346, 487, 503, 524
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 1 cut(s) 632
AdeI CACNNNGTG 1 cut(s) 314
AfaI GTAC 2 cut(s) 56, 242
AfiI CCNNNNNNNGG 3 cut(s) 391, 516, 566
AflIII ACRYGT 2 cut(s) 120, 522
AgeI ACCGGT 1 cut(s) 287
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 390
AluBI AGCT 9 cut(s) 100, 282, 300, 320, 369, 376, 421, 546, 574
AluI AGCT 9 cut(s) 100, 282, 300, 320, 369, 376, 421, 546, 574
Alw26I GTCTC 3 cut(s) 24, 54, 200
AlwNI CAGNNNCTG 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 2 cut(s) 148, 563
ApaI GGGCCC 1 cut(s) 567
ApeKI GCWGC 4 cut(s) 144, 329, 490, 533
ApoI RAATTY 1 cut(s) 632
AsiGI ACCGGT 1 cut(s) 287
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 563, 564
AsuC2I CCSGG 5 cut(s) 453, 472, 561, 567, 831
AsuHPI GGTGA 1 cut(s) 625
AsuII TTCGAA 1 cut(s) 701
AvaI CYCGRG 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 567
BarI GAAGNNNNNNTAC 2 cut(s) 233, 265
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 4 cut(s) 131, 316, 477, 545
BccI CCATC 3 cut(s) 122, 167, 224
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 392
BciVI GTATCC 1 cut(s) 630
BcnI CCSGG 5 cut(s) 453, 472, 561, 567, 831
BcoDI GTCTC 3 cut(s) 24, 54, 200
BfaI CTAG 2 cut(s) 386, 578
BfuAI ACCTGC 1 cut(s) 700
BfuI GTATCC 1 cut(s) 630
BisI GCNGC 8 cut(s) 145, 148, 247, 330, 488, 491, 494, 534
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 8 cut(s) 146, 149, 248, 331, 489, 492, 495, 535
Bme1390I CCNGG 6 cut(s) 392, 453, 472, 561, 567, 831
BmeT110I CYCGRG 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 563, 564
BmiI GGNNCC 2 cut(s) 564, 565
BmrFI CCNGG 6 cut(s) 392, 453, 472, 561, 567, 831
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 408, 730
BmuI ACTGGG 1 cut(s) 306
Bpu10I CCTNAGC 2 cut(s) 25, 296
Bpu1102I GCTNAGC 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 701
BpuMI CCSGG 5 cut(s) 453, 472, 561, 567, 831
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 452, 560
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 8 cut(s) 94, 124, 197, 227, 779, 801, 809, 831
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 516, 566
Bse118I RCCGGY 3 cut(s) 182, 287, 674
Bse1I ACTGG 2 cut(s) 82, 312
Bse3DI GCAATG 1 cut(s) 750
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 2 cut(s) 452, 560
BseLI CCNNNNNNNGG 3 cut(s) 391, 516, 566
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 3 cut(s) 192, 310, 785
BseNI ACTGG 2 cut(s) 82, 312
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 4 cut(s) 131, 316, 477, 545
BseYI CCCAGC 1 cut(s) 728
Bsh1236I CGCG 4 cut(s) 346, 487, 503, 524
BshFI GGCC 2 cut(s) 150, 565
BshTI ACCGGT 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 9 cut(s) 183, 288, 452, 471, 560, 567, 675, 807, 831
BsiWI CGTACG 1 cut(s) 54
BslFI GGGAC 3 cut(s) 469, 487, 533
BslI CCNNNNNNNGG 3 cut(s) 391, 516, 566
BsmAI GTCTC 3 cut(s) 24, 54, 200
BsmFI GGGAC 3 cut(s) 469, 487, 533
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 150, 565
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 364
Bsp119I TTCGAA 1 cut(s) 701
Bsp120I GGGCCC 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 567
Bsp143I GATC 1 cut(s) 459
Bsp1720I GCTNAGC 1 cut(s) 178
BspANI GGCC 2 cut(s) 150, 565
BspCNI CTCAG 3 cut(s) 191, 309, 784
BspFNI CGCG 4 cut(s) 346, 487, 503, 524
BspLI GGNNCC 2 cut(s) 564, 565
BspMI ACCTGC 1 cut(s) 700
BspT104I TTCGAA 1 cut(s) 701
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 750
BsrFI RCCGGY 3 cut(s) 182, 287, 674
BsrI ACTGG 2 cut(s) 82, 312
BssAI RCCGGY 3 cut(s) 182, 287, 674
BssECI CCNNGG 2 cut(s) 452, 560
BssMI GATC 1 cut(s) 459
BssNAI GTATAC 1 cut(s) 507
Bst1107I GTATAC 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 4 cut(s) 263, 478, 613, 698
BstBI TTCGAA 1 cut(s) 701
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 6 cut(s) 25, 178, 296, 370, 596, 771
BstEII GGTNACC 1 cut(s) 290
BstFNI CGCG 4 cut(s) 346, 487, 503, 524
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 462
BstMAI GTCTC 3 cut(s) 24, 54, 200
BstMBI GATC 1 cut(s) 459
BstMWI GCNNNNNNNGC 5 cut(s) 326, 493, 509, 530, 571
BstNI CCWGG 1 cut(s) 392
BstNSI RCATGY 2 cut(s) 39, 588
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 6 cut(s) 390, 451, 470, 559, 565, 829
BstSLI GKGCMC 1 cut(s) 567
BstUI CGCG 4 cut(s) 346, 487, 503, 524
BstV1I GCAGC 4 cut(s) 131, 316, 477, 545
BstZ17I GTATAC 1 cut(s) 507
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 2 cut(s) 150, 565
BtgZI GCGATG 1 cut(s) 551
BtrI CACGTC 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 75, 319
BveI ACCTGC 1 cut(s) 700
Cac8I GCNNGC 1 cut(s) 280
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 1 cut(s) 308
Cfr10I RCCGGY 3 cut(s) 182, 287, 674
Cfr13I GGNCC 2 cut(s) 563, 564
CseI GACGC 2 cut(s) 530, 677
CsiI ACCWGGT 1 cut(s) 390
Csp6I GTAC 2 cut(s) 55, 241
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 2 cut(s) 36, 585
CviQI GTAC 2 cut(s) 55, 241
DdeI CTNAG 6 cut(s) 25, 178, 296, 370, 596, 771
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
DraIII CACNNNGTG 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 567
Eco31I GGTCTC 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 364
Eco91I GGTNACC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 567
FaeI CATG 2 cut(s) 39, 588
FaiI YATR 6 cut(s) 37, 482, 507, 586, 785, 798
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 3 cut(s) 469, 487, 533
FatI CATG 2 cut(s) 35, 584
FauI CCCGC 1 cut(s) 510
FblI GTMKAC 2 cut(s) 506, 684
Fnu4HI GCNGC 8 cut(s) 145, 148, 247, 330, 488, 491, 494, 534
FriOI GRGCYC 1 cut(s) 567
Fsp4HI GCNGC 8 cut(s) 145, 148, 247, 330, 488, 491, 494, 534
FspBI CTAG 2 cut(s) 386, 578
GlaI GCGC 1 cut(s) 307
GluI GCNGC 8 cut(s) 145, 148, 247, 330, 488, 491, 494, 534
GsaI CCCAGC 1 cut(s) 732
HaeIII GGCC 2 cut(s) 150, 565
HapII CCGG 9 cut(s) 183, 288, 452, 471, 560, 567, 675, 807, 831
HgaI GACGC 2 cut(s) 530, 677
HhaI GCGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 39, 588
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 4 cut(s) 11, 62, 348, 467
HpaII CCGG 9 cut(s) 183, 288, 452, 471, 560, 567, 675, 807, 831
HphI GGTGA 1 cut(s) 625
Hpy166II GTNNAC 3 cut(s) 188, 507, 685
Hpy188I TCNGA 3 cut(s) 16, 408, 624
Hpy188III TCNNGA 1 cut(s) 763
Hpy8I GTNNAC 3 cut(s) 188, 507, 685
Hpy99I CGWCG 5 cut(s) 122, 224, 451, 650, 698
HpyCH4III ACNGT 4 cut(s) 263, 478, 613, 698
HpyCH4IV ACGT 6 cut(s) 53, 120, 159, 617, 656, 801
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 493, 509, 530, 571
HpyF3I CTNAG 6 cut(s) 25, 178, 296, 370, 596, 771
HpySE526I ACGT 6 cut(s) 53, 120, 159, 617, 656, 801
Hsp92II CATG 2 cut(s) 39, 588
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 459
LmnI GCTCC 4 cut(s) 287, 317, 579, 832
Lsp1109I GCAGC 4 cut(s) 131, 316, 477, 545
LweI GCATC 2 cut(s) 408, 730
MabI ACCWGGT 1 cut(s) 390
MaeI CTAG 2 cut(s) 386, 578
MaeII ACGT 6 cut(s) 53, 120, 159, 617, 656, 801
MaeIII GTNAC 4 cut(s) 49, 290, 613, 652
MalI GATC 1 cut(s) 461
MboI GATC 1 cut(s) 459
MboII GAAGA 4 cut(s) 127, 130, 244, 790
MhlI GDGCHC 1 cut(s) 567
MluCI AATT 3 cut(s) 426, 632, 662
MluI ACGCGT 1 cut(s) 522
MlyI GAGTC 2 cut(s) 56, 461
MmeI TCCRAC 3 cut(s) 632, 639, 799
MnlI CCTC 5 cut(s) 212, 305, 373, 781, 803
MseI TTAA 1 cut(s) 107
MspI CCGG 9 cut(s) 183, 288, 452, 471, 560, 567, 675, 807, 831
MspR9I CCNGG 6 cut(s) 392, 453, 472, 561, 567, 831
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 392
MvnI CGCG 4 cut(s) 346, 487, 503, 524
MwoI GCNNNNNNNGC 5 cut(s) 326, 493, 509, 530, 571
NciI CCSGG 5 cut(s) 453, 472, 561, 567, 831
NdeII GATC 1 cut(s) 459
NlaIII CATG 2 cut(s) 39, 588
NlaIV GGNNCC 2 cut(s) 564, 565
NmuCI GTSAC 2 cut(s) 49, 613
NspI RCATGY 2 cut(s) 39, 588
NspV TTCGAA 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 364
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 443, 455
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 11, 348
Pfl23II CGTACG 1 cut(s) 54
PfoI TCCNGGA 1 cut(s) 470
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 8 cut(s) 146, 149, 248, 331, 489, 492, 495, 535
PleI GAGTC 2 cut(s) 56, 461
PpsI GAGTC 2 cut(s) 56, 461
Psp6I CCWGG 1 cut(s) 390
PspEI GGTNACC 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 1 cut(s) 390
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 564, 565
PspOMI GGGCCC 1 cut(s) 563
PspPI GGNCC 2 cut(s) 563, 564
PspXI VCTCGAGB 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 14
RsaI GTAC 2 cut(s) 56, 242
RsaNI GTAC 2 cut(s) 55, 241
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 8 cut(s) 145, 148, 247, 330, 488, 491, 494, 534
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 2 cut(s) 563, 564
SchI GAGTC 2 cut(s) 56, 461
ScrFI CCNGG 6 cut(s) 392, 453, 472, 561, 567, 831
SduI GDGCHC 1 cut(s) 567
SexAI ACCWGGT 1 cut(s) 390
SfaNI GCATC 2 cut(s) 408, 730
Sfr274I CTCGAG 1 cut(s) 364
SfuI TTCGAA 1 cut(s) 701
SlaI CTCGAG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 3 cut(s) 426, 632, 662
SspI AATATT 1 cut(s) 44
SspMI CTAG 2 cut(s) 386, 578
StyD4I CCNGG 6 cut(s) 390, 451, 470, 559, 565, 829
TaaI ACNGT 4 cut(s) 263, 478, 613, 698
TaiI ACGT 6 cut(s) 56, 123, 162, 620, 659, 804
TaqI TCGA 6 cut(s) 126, 222, 365, 465, 693, 701
TasI AATT 3 cut(s) 426, 632, 662
TatI WGTACW 1 cut(s) 240
TauI GCSGC 4 cut(s) 150, 249, 490, 496
TfiI GAWTC 2 cut(s) 11, 348
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TscAI CASTG 2 cut(s) 82, 319
TseFI GTSAC 2 cut(s) 49, 613
TseI GCWGC 4 cut(s) 144, 329, 490, 533
Tsp45I GTSAC 2 cut(s) 49, 613
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 37, 72, 540
TspRI CASTG 2 cut(s) 82, 319
XapI RAATTY 1 cut(s) 632
XceI RCATGY 2 cut(s) 39, 588
XhoI CTCGAG 1 cut(s) 364
XmiI GTMKAC 2 cut(s) 506, 684
XspI CTAG 2 cut(s) 386, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.