pycom01g05420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001410
Physical Location & Seq
Reverse (-)
5132827 .. 5133120
294 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05420.1

Sequence Viewer

Length: 294 bp
ATGGGACGGGACGGGACAGGACGGAACGGAACGGAACGGAGCAGGAGCAAAGATGCCCTCGGATGGAAACAAGGAGGAAGAAGAAGGAGACGGAGAGGTTATAATTTTGTGTTCCACGGATGTGGAACGAGTCGTTCCAAGGGGGGTGAGGTGGAACAAAAATTCACCCAAAACTCGTCCTATGGAACAGCTCGTTCCACCCGTTTTAGGCGCACCAAACGTGGGACGGAACGCCTTGTCCCACTCTGTTCCGTCCCGTCCCACGTACCAAACGGTACCTATAAGAACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.94

Weight (kDa)

11.64

Isoelectric Point (pI)

75.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 102
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 2 cut(s) 267, 277
AfiI CCNNNNNNNGG 3 cut(s) 63, 207, 222
AleI CACNNNNGTG 1 cut(s) 120
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 161
Asp718I GGTACC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 157, 158
BanI GGYRCC 1 cut(s) 275
BccI CCATC 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 277
BmsI GCATC 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 58, 115, 138
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 207, 222
BseDI CCNNGG 3 cut(s) 58, 115, 138
BseGI GGATG 2 cut(s) 68, 125
BseLI CCNNNNNNNGG 3 cut(s) 63, 207, 222
BshNI GGYRCC 1 cut(s) 275
BslFI GGGAC 7 cut(s) 18, 23, 28, 224, 238, 239, 244
BslI CCNNNNNNNGG 3 cut(s) 63, 207, 222
BsmAI GTCTC 1 cut(s) 82
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 7 cut(s) 18, 23, 28, 224, 238, 239, 244
BspLI GGNNCC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 58, 115, 138
BssT1I CCWWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 275
BstBAI YACGTR 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 2 cut(s) 68, 125
BstHHI GCGC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 2 cut(s) 68, 125
CfoI GCGC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 266, 276
CviJI RGCY 1 cut(s) 191
CviKI_1 RGCY 1 cut(s) 191
CviQI GTAC 2 cut(s) 266, 276
Eco130I CCWWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 82
FaiI YATR 4 cut(s) 102, 183, 282, 292
FaqI GGGAC 7 cut(s) 18, 23, 28, 224, 238, 239, 244
FokI GGATG 2 cut(s) 75, 132
GlaI GCGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 213
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HinfI GANTC 1 cut(s) 130
HphI GGTGA 2 cut(s) 157, 158
Hpy188I TCNGA 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 2 cut(s) 220, 264
HpySE526I ACGT 2 cut(s) 220, 264
HspAI GCGC 1 cut(s) 211
KpnI GGTACC 1 cut(s) 279
LmnI GCTCC 2 cut(s) 39, 45
LpnPI CCDG 2 cut(s) 3, 28
LweI GCATC 1 cut(s) 43
MaeII ACGT 2 cut(s) 220, 264
MboII GAAGA 2 cut(s) 90, 93
MluCI AATT 2 cut(s) 103, 161
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 4 cut(s) 68, 68, 89, 142
MslI CAYNNNNRTG 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 277
OliI CACNNNNGTG 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 265
PsiI TTATAA 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 277
RsaI GTAC 2 cut(s) 267, 277
RsaNI GTAC 2 cut(s) 266, 276
RseI CAYNNNNRTG 1 cut(s) 120
SchI GAGTC 1 cut(s) 139
SetI ASST 6 cut(s) 100, 153, 193, 223, 267, 281
SfaNI GCATC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 2 cut(s) 103, 161
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 2 cut(s) 223, 267
TasI AATT 2 cut(s) 103, 161
TspGWI ACGGA 8 cut(s) 37, 42, 47, 52, 106, 132, 241, 242
XapI RAATTY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.