pycom05g28580

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
29243154 .. 29243594
441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28580.1

Sequence Viewer

Length: 327 bp
ATGAGTTTAGGGTCCCTATTAGGTATCGTTTGGTATGCAGACGGGACGGGATGGAACGGAATGGGACGGGACGGGAGGGGACAGGACAGAACGGAACGGAGCGGGGGCAAAGATGCCCTCGGATGGAAACAAGGAGGAAGAAGAAGGAGACGGAGAGGTTATAATTTTGCGTTTCACGGATGTGGAACGAGTCGTTCCAGGGGGGGTGAGGTGGAACTAAAATTCACCCAAAACTCGTTCCGTGGAACAGCTCGTTCCACCCGTTTTAGGTGCACCAAACGTGGGACGGAACGCCTTGTCCCACTCTGTTCCGTCCCCTTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.06

Weight (kDa)

11.48

Isoelectric Point (pI)

64.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AccBSI CCGCTC 1 cut(s) 102
AciI CCGC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 123, 267, 282
AjnI CCWGG 1 cut(s) 197
AleI CACNNNNGTG 1 cut(s) 180
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 142
Alw44I GTGCAC 1 cut(s) 271
ApaLI GTGCAC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 2 cut(s) 217, 218
AvaII GGWCC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 275
Bbv12I GWGCWC 1 cut(s) 275
BccI CCATC 2 cut(s) 45, 117
BciT130I CCWGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 13, 14
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 118, 198, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 267, 282
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 3 cut(s) 118, 198, 241
BseGI GGATG 3 cut(s) 56, 128, 185
BseLI CCNNNNNNNGG 3 cut(s) 123, 267, 282
BseSI GKGCMC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 275
BslFI GGGAC 7 cut(s) 58, 78, 83, 93, 284, 298, 299
BslI CCNNNNNNNGG 3 cut(s) 123, 267, 282
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 7 cut(s) 58, 78, 83, 93, 284, 298, 299
Bsp1286I GDGCHC 1 cut(s) 275
BspACI CCGC 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 13, 14
BsrBI CCGCTC 1 cut(s) 102
BssECI CCNNGG 3 cut(s) 118, 198, 241
Bst2UI CCWGG 1 cut(s) 199
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 3 cut(s) 56, 128, 185
BstMAI GTCTC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 3 cut(s) 56, 128, 185
Cfr13I GGNCC 1 cut(s) 12
CviJI RGCY 1 cut(s) 251
CviKI_1 RGCY 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 197
Esp3I CGTCTC 1 cut(s) 142
FaiI YATR 2 cut(s) 36, 162
FaqI GGGAC 7 cut(s) 58, 78, 83, 93, 284, 298, 299
FauI CCCGC 1 cut(s) 95
FokI GGATG 3 cut(s) 63, 135, 192
HinfI GANTC 1 cut(s) 190
HphI GGTGA 2 cut(s) 217, 218
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 122, 326
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 38, 273
HpySE526I ACGT 1 cut(s) 280
KflI GGGWCCC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 68, 184, 211
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 280
MbiI CCGCTC 1 cut(s) 102
MboII GAAGA 2 cut(s) 150, 153
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 2 cut(s) 163, 221
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 5 cut(s) 69, 128, 128, 149, 202
MslI CAYNNNNRTG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 13, 14
OliI CACNNNNGTG 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PpuMI RGGWCCY 1 cut(s) 12
PsiI TTATAA 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 13, 14
PspPI GGNCC 1 cut(s) 12
PspPPI RGGWCCY 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 12
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 275
SetI ASST 6 cut(s) 25, 160, 213, 253, 272, 283
SfaNI GCATC 1 cut(s) 103
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 2 cut(s) 163, 221
SsiI CCGC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 1 cut(s) 283
TasI AATT 2 cut(s) 163, 221
TspGWI ACGGA 8 cut(s) 72, 107, 112, 166, 192, 230, 301, 302
VneI GTGCAC 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.