Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001410

Physical Location & Seq

Genomic Coordinates Reverse (-)

8662926 .. 8663444

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCAGACGGGACGGGACGAGACGGGACAAGACGGAACGGAACGGAGCGGGAGCAAAGATGCCCTCGGATGGAAACAAGGAGGAAGAAGAAGGAGACGGAGAGGTTATAATTTTGTGTTCCACGGATGTGGAACGAGTCGTTCCAGGGGGGTGAGGTGGAATGAAAATTCACCCAAAACTCGTCCCGTGGAACAGCTCGTTCCACCAATTTTAGGCGCACCAAACGTGGGACGGAACGCCTTGTCCCACTTTGTTCCGTCCCGTTCCACCTACCAAACGGTACCTTTAGTTTCGGAGAAACCCTCGAGTCGGATTCTTGTGTGTGCGAGGCTTTCCTTCTTCTTCTCTTTCGATTTCATCATCTTTCAATTTGAACTTGAGGGGTTAGGGTTTGCGAATTTATCCAAATCAAGGCCAACTAGATTTATGATAAATTTCAGGAATTGGAAAGGTTTCATGTTGAATTTGGATTCTTTTGGGTCGGGCTGTGAATTTGTTGATGGATACGGAAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

173

Amino Acids

19.5

Weight (kDa)

10.62

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001410)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Species

Orthologous Gene IDs

pyrus_communis

pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
Acc65I	GGTACC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	280
AccBSI	CCGCTC	1 cut(s)	48
AciI	CCGC	1 cut(s)	48
AcsI	RAATTY	5 cut(s)	166, 397, 433, 463, 491
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	5 cut(s)	69, 212, 227, 309, 411
AgsI	TTSAA	3 cut(s)	368, 374, 463
AjnI	CCWGG	1 cut(s)	143
AleI	CACNNNNGTG	1 cut(s)	126
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw26I	GTCTC	2 cut(s)	14, 88
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	413
ApoI	RAATTY	5 cut(s)	166, 397, 433, 463, 491
Asp700I	GAANNNNTTC	1 cut(s)	452
Asp718I	GGTACC	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	162, 163
AvaI	CYCGRG	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	280
BccI	CCATC	2 cut(s)	63, 494
BciT130I	CCWGG	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	497
BcoDI	GTCTC	2 cut(s)	14, 88
BfaI	CTAG	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	497
Bme1390I	CCNGG	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpuEI	CTTGAG	1 cut(s)	398
BsaJI	CCNNGG	4 cut(s)	64, 121, 144, 186
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 212, 227, 309, 411
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	4 cut(s)	64, 121, 144, 186
BseGI	GGATG	2 cut(s)	74, 131
BseLI	CCNNNNNNNGG	5 cut(s)	69, 212, 227, 309, 411
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	304
BslFI	GGGAC	7 cut(s)	24, 29, 39, 168, 229, 243, 244
BslI	CCNNNNNNNGG	5 cut(s)	69, 212, 227, 309, 411
BsmAI	GTCTC	2 cut(s)	14, 88
BsmBI	CGTCTC	2 cut(s)	14, 88
BsmFI	GGGAC	7 cut(s)	24, 29, 39, 168, 229, 243, 244
BsnI	GGCC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	304
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	48
BssECI	CCNNGG	4 cut(s)	64, 121, 144, 186
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	280
BstDSI	CCRYGG	2 cut(s)	121, 186
BstF5I	GGATG	2 cut(s)	74, 131
BstHHI	GCGC	1 cut(s)	218
BstMAI	GTCTC	2 cut(s)	14, 88
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	415
BtgI	CCRYGG	2 cut(s)	121, 186
BtsCI	GGATG	2 cut(s)	74, 131
CfoI	GCGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	1 cut(s)	457
CviJI	RGCY	4 cut(s)	196, 331, 415, 486
CviKI_1	RGCY	4 cut(s)	196, 331, 415, 486
CviQI	GTAC	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	143
Esp3I	CGTCTC	2 cut(s)	14, 88
FaeI	CATG	1 cut(s)	460
FaiI	YATR	3 cut(s)	108, 428, 458
FaqI	GGGAC	7 cut(s)	24, 29, 39, 168, 229, 243, 244
FatI	CATG	1 cut(s)	456
FauI	CCCGC	1 cut(s)	41
FokI	GGATG	2 cut(s)	81, 138
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	217
HaeIII	GGCC	1 cut(s)	415
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	136, 307, 313, 470
HphI	GGTGA	2 cut(s)	162, 163
Hpy188I	TCNGA	3 cut(s)	68, 295, 312
Hpy188III	TCNNGA	1 cut(s)	439
HpyAV	CCTTC	2 cut(s)	84, 346
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	4
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	1 cut(s)	216
KpnI	GGTACC	1 cut(s)	284
LmnI	GCTCC	2 cut(s)	45, 51
LpnPI	CCDG	3 cut(s)	130, 157, 424
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	225
MbiI	CCGCTC	1 cut(s)	48
MboII	GAAGA	4 cut(s)	96, 99, 331, 334
MluCI	AATT	9 cut(s)	109, 166, 207, 368, 397, 433, 442, 463, 491
MlyI	GAGTC	2 cut(s)	145, 316
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	7 cut(s)	74, 74, 95, 147, 313, 321, 373
MroXI	GAANNNNTTC	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	1 cut(s)	282
OliI	CACNNNNGTG	1 cut(s)	126
PaeR7I	CTCGAG	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	313, 470
PleI	GAGTC	2 cut(s)	144, 315
PpsI	GAGTC	2 cut(s)	144, 315
PsiI	TTATAA	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	282
PspXI	VCTCGAGB	1 cut(s)	304
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	126
SchI	GAGTC	2 cut(s)	145, 316
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	7 cut(s)	106, 158, 198, 228, 272, 286, 454
SfaNI	GCATC	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	304
SlaI	CTCGAG	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	304, 377
SmoI	CTYRAG	2 cut(s)	304, 377
Sse9I	AATT	9 cut(s)	109, 166, 207, 368, 397, 433, 442, 463, 491
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	305, 351
TasI	AATT	9 cut(s)	109, 166, 207, 368, 397, 433, 442, 463, 491
TfiI	GAWTC	2 cut(s)	313, 470
TspDTI	ATGAA	3 cut(s)	177, 346, 445
TspGWI	ACGGA	7 cut(s)	48, 53, 58, 112, 138, 246, 247
XapI	RAATTY	5 cut(s)	166, 397, 433, 463, 491
XhoI	CTCGAG	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.