Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001410

Physical Location & Seq

Genomic Coordinates Forward (+)

3150504 .. 3151139

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATCACATGCATAAGTGCCCTCAAAGGGGTGAGGACCATTACACCCAGAAACCCCTGTATCGTTTGGTATGCAGACGGGACGGGACAGGACGGAACGGAACGGAGCGGGAGCAAAGATGCCCTCAGATGGAAACAAGGAGGAAGAAGAAGGAGACGGAGATGTTATAATTTTGCGTTCCACGGATGTGGAACGAGTCGTTCCAGGGGGGTGAGATGGAACGAAAATTCACCCAAAACTCGTCCCATGGAACAGCTCGTTCCACCCGTTTTAGGCGCACCAAACATGGGACGGAACGTCTTGTCCCACTCTATTCCGTCCCGTCCCACGTACCAAACGGTACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

116

Amino Acids

12.91

Weight (kDa)

11.25

Isoelectric Point (pI)

77.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001410)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Species

Orthologous Gene IDs

pyrus_communis

pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
Acc65I	GGTACC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	340
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	2 cut(s)	332, 342
AfiI	CCNNNNNNNGG	5 cut(s)	27, 28, 129, 272, 287
AhdI	GACNNNNNGTC	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	203
AleI	CACNNNNGTG	1 cut(s)	186
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	43, 222, 223
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	22
BaeI	ACNNNNGTAYC	2 cut(s)	43, 76
BanI	GGYRCC	1 cut(s)	340
BccI	CCATC	2 cut(s)	123, 210
BciT130I	CCWGG	1 cut(s)	205
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	36
BmeRI	GACNNNNNGTC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	181, 204, 246
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 28, 129, 272, 287
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	3 cut(s)	181, 204, 246
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	5 cut(s)	27, 28, 129, 272, 287
BseMII	CTCAG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	340
BslFI	GGGAC	7 cut(s)	94, 99, 228, 289, 303, 304, 309
BslI	CCNNNNNNNGG	5 cut(s)	27, 28, 129, 272, 287
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	7 cut(s)	94, 99, 228, 289, 303, 304, 309
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	108
BssECI	CCNNGG	3 cut(s)	181, 204, 246
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	2 cut(s)	181, 246
BstF5I	GGATG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	3
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	188
BtgI	CCRYGG	2 cut(s)	181, 246
BtsCI	GGATG	1 cut(s)	191
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	331, 341
CviAII	CATG	3 cut(s)	9, 247, 286
CviJI	RGCY	1 cut(s)	256
CviKI_1	RGCY	1 cut(s)	256
CviQI	GTAC	2 cut(s)	331, 341
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DriI	GACNNNNNGTC	1 cut(s)	296
Eam1105I	GACNNNNNGTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	12, 250, 289
FaiI	YATR	7 cut(s)	10, 14, 72, 168, 248, 287, 346
FaqI	GGGAC	7 cut(s)	94, 99, 228, 289, 303, 304, 309
FatI	CATG	3 cut(s)	8, 246, 285
FauI	CCCGC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	3 cut(s)	12, 250, 289
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	1 cut(s)	196
HphI	GGTGA	3 cut(s)	43, 222, 223
Hpy188I	TCNGA	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	297, 329
HpyCH4V	TGCA	2 cut(s)	12, 74
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	2 cut(s)	297, 329
Hsp92II	CATG	3 cut(s)	12, 250, 289
HspAI	GCGC	1 cut(s)	276
KpnI	GGTACC	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	105, 111
LpnPI	CCDG	5 cut(s)	61, 70, 74, 190, 217
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	2 cut(s)	297, 329
MalI	GATC	1 cut(s)	5
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	156, 159
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	2 cut(s)	169, 226
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	4 cut(s)	27, 32, 134, 134
Mph1103I	ATGCAT	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	3 cut(s)	12, 250, 289
NlaIV	GGNNCC	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	14
NspI	RCATGY	1 cut(s)	12
OliI	CACNNNNGTG	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	36
RsaI	GTAC	2 cut(s)	332, 342
RsaNI	GTAC	2 cut(s)	331, 341
RseI	CAYNNNNRTG	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	3 cut(s)	258, 300, 332
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	169, 226
SsiI	CCGC	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	300, 332
TasI	AATT	2 cut(s)	169, 226
TspGWI	ACGGA	7 cut(s)	108, 113, 118, 172, 198, 306, 307
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.