Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001410

Physical Location & Seq

Genomic Coordinates Reverse (-)

3276272 .. 3276616

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCAGACGGGACGGGACGGAACAGAATGGGACGGGACGGGACAGGATAGGACGGAACGGAGCCGGAGCAAAGATGCCCTCGGATGGAAACAAAGAGGAAGAAGAAGGAGACGGAGAGGTTATAATTTTGTGTTCCACGGATGTGGAACGAGTCATTCCAGGGGGGTGAGGTGGAACGAAAATTCACCCAAAACTCGTTCCGTGGAACAGCTCGTTTCACCCGTTTTGGGCGCACCAAACGTGGGACGGAACGCCTTGTCCCATTCTGTTCCGTCCCGTCCCACGTACCAAACGGTACCTGGTGGAACTGCTCTTAGACCGTACTCCTTATCCTTTGGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

115

Amino Acids

12.76

Weight (kDa)

11.51

Isoelectric Point (pI)

77.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001410)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Species

Orthologous Gene IDs

pyrus_communis

pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	123
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	181
AfaI	GTAC	3 cut(s)	287, 297, 323
AfiI	CCNNNNNNNGG	3 cut(s)	84, 227, 242
AjnI	CCWGG	2 cut(s)	158, 298
AleI	CACNNNNGTG	1 cut(s)	141
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	181
Asp718I	GGTACC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	177, 178, 210
BanI	GGYRCC	1 cut(s)	295
BccI	CCATC	1 cut(s)	78
BciT130I	CCWGG	2 cut(s)	160, 300
BcoDI	GTCTC	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	160, 300
BmiI	GGNNCC	2 cut(s)	62, 297
BmrFI	CCNGG	2 cut(s)	160, 300
BmsI	GCATC	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	79, 136, 159, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 227, 242
BseBI	CCWGG	2 cut(s)	160, 300
BseDI	CCNNGG	4 cut(s)	79, 136, 159, 201
BseGI	GGATG	2 cut(s)	89, 146
BseLI	CCNNNNNNNGG	3 cut(s)	84, 227, 242
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	9 cut(s)	24, 29, 44, 49, 54, 244, 258, 259, 264
BslI	CCNNNNNNNGG	3 cut(s)	84, 227, 242
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	9 cut(s)	24, 29, 44, 49, 54, 244, 258, 259, 264
BspLI	GGNNCC	2 cut(s)	62, 297
BspT107I	GGYRCC	1 cut(s)	295
BssECI	CCNNGG	4 cut(s)	79, 136, 159, 201
Bst2UI	CCWGG	2 cut(s)	160, 300
Bst4CI	ACNGT	2 cut(s)	295, 321
BstBAI	YACGTR	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	314
BstDSI	CCRYGG	2 cut(s)	136, 201
BstF5I	GGATG	2 cut(s)	89, 146
BstHHI	GCGC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	103
BstNI	CCWGG	2 cut(s)	160, 300
BstSCI	CCNGG	2 cut(s)	158, 298
BstXI	CCANNNNNNTGG	1 cut(s)	143
BtgI	CCRYGG	2 cut(s)	136, 201
BtsCI	GGATG	2 cut(s)	89, 146
CfoI	GCGC	1 cut(s)	233
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	286, 296, 322
CviJI	RGCY	2 cut(s)	63, 211
CviKI_1	RGCY	2 cut(s)	63, 211
CviQI	GTAC	3 cut(s)	286, 296, 322
DdeI	CTNAG	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	158, 298
Esp3I	CGTCTC	1 cut(s)	103
FaiI	YATR	2 cut(s)	123, 341
FaqI	GGGAC	9 cut(s)	24, 29, 44, 49, 54, 244, 258, 259, 264
FokI	GGATG	2 cut(s)	96, 153
GlaI	GCGC	1 cut(s)	232
HapII	CCGG	1 cut(s)	64
HhaI	GCGC	1 cut(s)	233
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	3 cut(s)	177, 178, 210
Hpy188I	TCNGA	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	295, 321
HpyCH4IV	ACGT	2 cut(s)	240, 284
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	2 cut(s)	240, 284
HspAI	GCGC	1 cut(s)	231
KpnI	GGTACC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	60, 66
LpnPI	CCDG	6 cut(s)	29, 77, 145, 172, 285, 312
LweI	GCATC	1 cut(s)	64
MabI	ACCWGGT	1 cut(s)	298
MaeII	ACGT	2 cut(s)	240, 284
MboII	GAAGA	2 cut(s)	111, 114
MluCI	AATT	2 cut(s)	124, 181
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	89, 89, 110, 162
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	160, 300
MvaI	CCWGG	2 cut(s)	160, 300
NlaIV	GGNNCC	2 cut(s)	62, 297
OliI	CACNNNNGTG	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Ppu21I	YACGTR	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	158, 298
PspGI	CCWGG	2 cut(s)	158, 298
PspN4I	GGNNCC	2 cut(s)	62, 297
RsaI	GTAC	3 cut(s)	287, 297, 323
RsaNI	GTAC	3 cut(s)	286, 296, 322
RseI	CAYNNNNRTG	1 cut(s)	141
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	160, 300
SetI	ASST	6 cut(s)	121, 173, 213, 243, 287, 301
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	124, 181
StyD4I	CCNGG	2 cut(s)	158, 298
TaaI	ACNGT	2 cut(s)	295, 321
TaiI	ACGT	2 cut(s)	243, 287
TasI	AATT	2 cut(s)	124, 181
TspGWI	ACGGA	8 cut(s)	33, 68, 73, 127, 153, 190, 261, 262
XapI	RAATTY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.