pycom01g06550

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001410
Physical Location & Seq
Forward (+)
6963133 .. 6963534
402 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g06550.1

Sequence Viewer

Length: 402 bp
ATGCGACAGGATGGTGTTTTGGTATCGTTTGGTATGCAGACAAGACGGAACGGAACGGAATGGGACAGAACGAGACAAGACAGAACAGAACAGAGCTGGAGCAAAGATGCCCTCGGATGGAAACAAGGAGGAAGAAGAAGGAGACGGAGAGATTATAATTTTGTGTTCCACGGATGTGGAACGAGTCGTTCCATGGGGGTGAGGTGGAACGAAAATTCACTCAAAACTCGTCCCGTGGAACAGCTCATTCCACCCGTTTTAGGCGCACCAAACGTGGAACGAAACGCCTTGTCCCACTCTATTCCGTCCCGTCCCACATACCAAACGATACCTTTGTGCACGAACTTGGGCAGCAACACGGCCGGGAATTCCACACCCAGGAGTTTCTCCTACTTCGCCTAA

Protein Analysis

134

Amino Acids

15.2

Weight (kDa)

11.18

Isoelectric Point (pI)

70.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 2 cut(s) 214, 367
AfiI CCNNNNNNNGG 3 cut(s) 117, 260, 378
AjnI CCWGG 1 cut(s) 377
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 2 cut(s) 96, 244
AluI AGCT 2 cut(s) 96, 244
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 2 cut(s) 67, 136
Alw44I GTGCAC 1 cut(s) 337
AoxI GGCC 1 cut(s) 360
ApaLI GTGCAC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 351
ApoI RAATTY 2 cut(s) 214, 367
AspLEI GCGC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 211
BaeGI GKGCMC 1 cut(s) 341
BaeI ACNNNNGTAYC 2 cut(s) 320, 353
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 363
BccI CCATC 2 cut(s) 5, 111
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 379
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 67, 136
BisI GCNGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 353
Bme1390I CCNGG 2 cut(s) 364, 379
BmrFI CCNGG 2 cut(s) 364, 379
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 364
BsaJI CCNNGG 5 cut(s) 112, 169, 192, 234, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 260, 378
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 5 cut(s) 112, 169, 192, 234, 377
BseGI GGATG 3 cut(s) 16, 122, 179
BseLI CCNNNNNNNGG 3 cut(s) 117, 260, 378
BseSI GKGCMC 1 cut(s) 341
BseX3I CGGCCG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 363
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 1 cut(s) 363
BslFI GGGAC 5 cut(s) 77, 216, 277, 292, 297
BslI CCNNNNNNNGG 3 cut(s) 117, 260, 378
BsmAI GTCTC 2 cut(s) 67, 136
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 5 cut(s) 77, 216, 277, 292, 297
BsnI GGCC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 341
Bsp19I CCATGG 1 cut(s) 192
BspANI GGCC 1 cut(s) 362
BssECI CCNNGG 5 cut(s) 112, 169, 192, 234, 377
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 379
BstDSI CCRYGG 3 cut(s) 169, 192, 234
BstF5I GGATG 3 cut(s) 16, 122, 179
BstHHI GCGC 1 cut(s) 266
BstMAI GTCTC 2 cut(s) 67, 136
BstMCI CGRYCG 1 cut(s) 363
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 362, 377
BstSLI GKGCMC 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 363
BstXI CCANNNNNNTGG 1 cut(s) 176
BstZI CGGCCG 1 cut(s) 360
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 3 cut(s) 169, 192, 234
BtsCI GGATG 3 cut(s) 16, 122, 179
CfoI GCGC 1 cut(s) 266
CviAII CATG 1 cut(s) 193
CviJI RGCY 3 cut(s) 96, 244, 362
CviKI_1 RGCY 3 cut(s) 96, 244, 362
EaeI YGGCCR 1 cut(s) 360
EagI CGGCCG 1 cut(s) 360
EclXI CGGCCG 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 192
Eco52I CGGCCG 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 1 cut(s) 196
FaiI YATR 4 cut(s) 35, 156, 194, 319
FaqI GGGAC 5 cut(s) 77, 216, 277, 292, 297
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 352
FokI GGATG 3 cut(s) 23, 129, 186
Fsp4HI GCNGC 1 cut(s) 352
GlaI GCGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 352
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 1 cut(s) 362
HapII CCGG 1 cut(s) 363
HhaI GCGC 1 cut(s) 266
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 1 cut(s) 184
HpaII CCGG 1 cut(s) 363
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 37, 339
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 264
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 4 cut(s) 82, 364, 376, 391
Lsp1109I GCAGC 1 cut(s) 363
LweI GCATC 1 cut(s) 97
MaeII ACGT 1 cut(s) 273
MboII GAAGA 2 cut(s) 144, 147
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 3 cut(s) 157, 214, 367
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 3 cut(s) 122, 122, 195
MslI CAYNNNNRTG 2 cut(s) 174, 197
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 2 cut(s) 364, 379
MvaI CCWGG 1 cut(s) 379
NciI CCSGG 1 cut(s) 364
NcoI CCATGG 1 cut(s) 192
NlaIII CATG 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 174
PkrI GCNGC 1 cut(s) 353
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
RseI CAYNNNNRTG 2 cut(s) 174, 197
SatI GCNGC 1 cut(s) 352
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 364, 379
SduI GDGCHC 1 cut(s) 341
SetI ASST 5 cut(s) 98, 206, 246, 276, 334
SfaNI GCATC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 174, 197
Sse9I AATT 3 cut(s) 157, 214, 367
StyD4I CCNGG 2 cut(s) 362, 377
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 276
TasI AATT 3 cut(s) 157, 214, 367
TseI GCWGC 1 cut(s) 351
TspGWI ACGGA 6 cut(s) 61, 66, 71, 160, 186, 294
VneI GTGCAC 1 cut(s) 337
XapI RAATTY 2 cut(s) 214, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.