Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001410

Physical Location & Seq

Genomic Coordinates Forward (+)

12110504 .. 12110993

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTGTACCTTGCCATGGAAGTGGTGCTTGTTCTTGAAAATGGTGTTGCATCGACGCCTTTCTCCACCAGGGCGCAACCAGTGTCGCCATTGTTGGTGTGGCTTTGGTCACCGCCACGGCCGCCGTTTCTGATAGCTCCCCATGCCCTCGGATGGAAACGAGGAGGAAGAAGAAGGAGACGGAGAGGTTATAATTTTGTGTTCCACGGATGTGGAACGAGTCGTTCTAGGGGGTGGAGGTGGAATGAAAATTCACCCAAAACTCGTCCCGTGGAACAACGCGTTCCACCCGTTTTAGGCGTACCAAACGTGGGACGGAACGCCTCATCCCACTCTATTCCGTCCCGTCCCACGTACCAAACGGTACCTAAATTCCCCATAAGCAGCTGCTCGGGTGATTCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

136

Amino Acids

15.14

Weight (kDa)

11.68

Isoelectric Point (pI)

88.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001410)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Species

Orthologous Gene IDs

pyrus_communis

pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
Acc65I	GGTACC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	364
AccII	CGCG	1 cut(s)	282
AciI	CCGC	2 cut(s)	113, 122
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	250, 371
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	4 cut(s)	8, 303, 356, 366
AfiI	CCNNNNNNNGG	4 cut(s)	16, 153, 296, 311
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	38, 402
AjnI	CCWGG	1 cut(s)	68
AleI	CACNNNNGTG	1 cut(s)	210
AloI	GAACNNNNNNTCC	2 cut(s)	311, 343
AluBI	AGCT	2 cut(s)	137, 387
AluI	AGCT	2 cut(s)	137, 387
Alw26I	GTCTC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	384, 387
ApoI	RAATTY	2 cut(s)	250, 371
Asp718I	GGTACC	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	102, 246, 407
AvaI	CYCGRG	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	374, 396
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	2 cut(s)	109, 134
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	3 cut(s)	122, 385, 388
BlsI	GCNGC	3 cut(s)	123, 386, 389
Bme1390I	CCNGG	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	6 cut(s)	15, 69, 116, 148, 205, 270
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 153, 296, 311
Bse1I	ACTGG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	6 cut(s)	15, 69, 116, 148, 205, 270
BseGI	GGATG	3 cut(s)	158, 215, 326
BseLI	CCNNNNNNNGG	4 cut(s)	16, 153, 296, 311
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	177
BseX3I	CGGCCG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	374, 396
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	364
BsiEI	CGRYCG	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	391
BslFI	GGGAC	4 cut(s)	252, 327, 328, 333
BslI	CCNNNNNNNGG	4 cut(s)	16, 153, 296, 311
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	4 cut(s)	252, 327, 328, 333
BsnI	GGCC	1 cut(s)	121
BsoBI	CYCGRG	1 cut(s)	391
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	2 cut(s)	113, 122
BspANI	GGCC	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	6 cut(s)	15, 69, 116, 148, 205, 270
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	354
BstDSI	CCRYGG	4 cut(s)	15, 116, 205, 270
BstEII	GGTNACC	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	158, 215, 326
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	172
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 143
BstNI	CCWGG	1 cut(s)	70
BstPI	GGTNACC	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	68
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	374, 396
BstXI	CCANNNNNNTGG	2 cut(s)	22, 212
BstZI	CGGCCG	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	121
BtgI	CCRYGG	4 cut(s)	15, 116, 205, 270
BtsCI	GGATG	3 cut(s)	158, 215, 326
BtsIMutI	CAGTG	1 cut(s)	87
CfoI	GCGC	1 cut(s)	76
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	4 cut(s)	7, 302, 355, 365
CviAII	CATG	2 cut(s)	16, 143
CviJI	RGCY	4 cut(s)	103, 121, 137, 387
CviKI_1	RGCY	4 cut(s)	103, 121, 137, 387
CviQI	GTAC	4 cut(s)	7, 302, 355, 365
EaeI	YGGCCR	1 cut(s)	119
EagI	CGGCCG	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	391
Eco91I	GGTNACC	1 cut(s)	108
EcoO65I	GGTNACC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	2 cut(s)	19, 146
FaiI	YATR	4 cut(s)	17, 144, 192, 380
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	4 cut(s)	252, 327, 328, 333
FatI	CATG	2 cut(s)	15, 142
Fnu4HI	GCNGC	3 cut(s)	122, 385, 388
FokI	GGATG	3 cut(s)	165, 222, 313
Fsp4HI	GCNGC	3 cut(s)	122, 385, 388
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	3 cut(s)	122, 385, 388
HaeIII	GGCC	1 cut(s)	121
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	19, 146
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	2 cut(s)	220, 398
HphI	GGTGA	3 cut(s)	102, 246, 407
Hpy188I	TCNGA	2 cut(s)	132, 152
Hpy188III	TCNNGA	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	309, 353
HpyCH4V	TGCA	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 143
HpySE526I	ACGT	2 cut(s)	309, 353
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	19, 146
HspAI	GCGC	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	368
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	3 cut(s)	55, 82, 93
Lsp1109I	GCAGC	2 cut(s)	374, 396
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	2 cut(s)	309, 353
MaeIII	GTNAC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	180, 183
MluCI	AATT	3 cut(s)	193, 250, 371
MluI	ACGCGT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	6 cut(s)	155, 158, 158, 179, 231, 334
MslI	CAYNNNNRTG	2 cut(s)	20, 210
MspA1I	CMGCKG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	121, 143
NcoI	CCATGG	1 cut(s)	15
NlaIII	CATG	2 cut(s)	19, 146
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	108
OliI	CACNNNNGTG	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	123, 386, 389
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
Ppu21I	YACGTR	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	68
PspEI	GGTNACC	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	387
RsaI	GTAC	4 cut(s)	8, 303, 356, 366
RsaNI	GTAC	4 cut(s)	7, 302, 355, 365
RseI	CAYNNNNRTG	2 cut(s)	20, 210
SatI	GCNGC	3 cut(s)	122, 385, 388
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	8 cut(s)	12, 139, 190, 242, 312, 356, 370, 389
SfaNI	GCATC	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	20, 210
Sse9I	AATT	3 cut(s)	193, 250, 371
SsiI	CCGC	2 cut(s)	113, 122
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	2 cut(s)	312, 356
TaqI	TCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	193, 250, 371
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	398
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	2 cut(s)	384, 387
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	261
TspGWI	ACGGA	4 cut(s)	196, 222, 330, 331
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	2 cut(s)	250, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.