Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001410

Physical Location & Seq

Genomic Coordinates Reverse (-)

27183242 .. 27183957

Gene Structure 716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATCATGGAGTGGGGTCTTCCTGATATCGTTTGCTGGGGCATTATTATACCCAGCAGCTTTGGGGACGAGTGCTCGAACATGCCTTCCGTTCCTACTTGCATCAACTGTTCTGGGCTACATAGTTGGTTCTGGATTTCCATCAGATGTGAAGAAGGTTTTCCACCCCCATTATTTGCTGTGCACTATCTGCAGATCTGGCAGCATTCGGTATTGTTTGGTATGCAGACGGGACGGGACGGGACGGAACGGAATGGGACGGGACAGGACGGAACGGAACGGAGCGGGAGCAAAGATGCCCTCGGATGGAAACAAGGAGGAAGAAGAAGGAGACGGAGAGGTTATAATTTTGTGTTCCACGAATGTGGAACGAATCGTTCCAAGGGGGTGAGGTGGAACGAAAATTCACCCAAAACTCGTCCCGTGGAACAGCTCGTTCCACCCGTTTTAGGCGCACCAAACGTGGGACGGAACGCCTTGTCCCACTCTGTCCGTCCCGTCCCACAAACCAAACGGTACCTTATGGATACTTCTCCAAGTCCGGGCTTGATCCTGTTCTTGGTATACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

191

Amino Acids

21.41

Weight (kDa)

9.21

Isoelectric Point (pI)

71.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001410)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Species

Orthologous Gene IDs

pyrus_communis

pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	516
AccBSI	CCGCTC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	1 cut(s)	285
AclWI	GGATC	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	403
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	5 cut(s)	306, 449, 464, 542, 559
AleI	CACNNNNGTG	1 cut(s)	363
AloI	GAACNNNNNNTCC	4 cut(s)	71, 103, 464, 496
AluBI	AGCT	2 cut(s)	60, 433
AluI	AGCT	2 cut(s)	60, 433
Alw21I	GWGCWC	2 cut(s)	77, 186
Alw26I	GTCTC	1 cut(s)	325
Alw44I	GTGCAC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	544
ApaLI	GTGCAC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	57, 202
ApoI	RAATTY	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	159
Asp718I	GGTACC	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	2 cut(s)	399, 400
BaeGI	GKGCMC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	77, 186
BbvI	GCAGC	2 cut(s)	69, 214
BccI	CCATC	2 cut(s)	149, 300
BciVI	GTATCC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	2 cut(s)	58, 203
BlsI	GCNGC	2 cut(s)	59, 204
Bme1390I	CCNGG	1 cut(s)	543
BmiI	GGNNCC	1 cut(s)	518
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	111, 286
BpiI	GAAGAC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	301, 381, 423
Bsc4I	CCNNNNNNNGG	5 cut(s)	306, 449, 464, 542, 559
Bse8I	GATNNNNATC	1 cut(s)	140
BseDI	CCNNGG	3 cut(s)	301, 381, 423
BseGI	GGATG	1 cut(s)	311
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	5 cut(s)	306, 449, 464, 542, 559
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	69, 214
BseYI	CCCAGC	2 cut(s)	36, 53
BshNI	GGYRCC	1 cut(s)	516
BsiHKAI	GWGCWC	2 cut(s)	77, 186
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	5 cut(s)	306, 449, 464, 542, 559
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	77, 186
Bsp143I	GATC	3 cut(s)	3, 195, 549
BspACI	CCGC	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	518
BspMAI	CTGCAG	1 cut(s)	195
BspPI	GGATC	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	516
BsrBI	CCGCTC	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	301, 381, 423
BssMI	GATC	3 cut(s)	3, 195, 549
BssNAI	GTATAC	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	381
Bst1107I	GTATAC	1 cut(s)	565
Bst4CI	ACNGT	2 cut(s)	110, 516
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	3 cut(s)	6, 198, 552
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	3, 195, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 199
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	69, 214
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	195
BstZ17I	GTATAC	1 cut(s)	565
BsuI	GTATCC	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	311
CfoI	GCGC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	2 cut(s)	7, 82
CviJI	RGCY	4 cut(s)	60, 118, 433, 546
CviKI_1	RGCY	4 cut(s)	60, 118, 433, 546
CviQI	GTAC	1 cut(s)	517
DpnI	GATC	3 cut(s)	5, 197, 551
DpnII	GATC	3 cut(s)	3, 195, 549
Eco130I	CCWWGG	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	2 cut(s)	10, 85
FaiI	YATR	8 cut(s)	8, 50, 83, 123, 224, 345, 524, 565
FatI	CATG	2 cut(s)	6, 81
FauI	CCCGC	1 cut(s)	278
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	58, 203
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	58, 203
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	2 cut(s)	58, 203
GsaI	CCCAGC	2 cut(s)	40, 57
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	2 cut(s)	10, 85
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	2 cut(s)	399, 400
Hpy166II	GTNNAC	2 cut(s)	184, 565
Hpy188I	TCNGA	3 cut(s)	146, 305, 572
Hpy188III	TCNNGA	2 cut(s)	23, 133
Hpy8I	GTNNAC	2 cut(s)	184, 565
HpyAV	CCTTC	3 cut(s)	96, 149, 321
HpyCH4III	ACNGT	2 cut(s)	110, 516
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	102, 184, 193, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 199
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	10, 85
HspAI	GCGC	1 cut(s)	453
KpnI	GGTACC	1 cut(s)	520
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 195, 549
LmnI	GCTCC	2 cut(s)	282, 288
LpnPI	CCDG	9 cut(s)	22, 36, 67, 99, 118, 184, 251, 555, 566
Lsp1109I	GCAGC	2 cut(s)	69, 214
LweI	GCATC	2 cut(s)	111, 286
MaeII	ACGT	1 cut(s)	462
MalI	GATC	3 cut(s)	5, 197, 551
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	3 cut(s)	3, 195, 549
MboII	GAAGA	4 cut(s)	11, 164, 333, 336
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	77, 186
MluCI	AATT	2 cut(s)	346, 403
MnlI	CCTC	4 cut(s)	311, 311, 332, 384
MroXI	GAANNNNTTC	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	190, 199
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	3 cut(s)	3, 195, 549
NlaIII	CATG	2 cut(s)	10, 85
NlaIV	GGNNCC	1 cut(s)	518
NspI	RCATGY	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PctI	GAATGC	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	59, 204
PsiI	TTATAA	1 cut(s)	345
PspFI	CCCAGC	2 cut(s)	36, 53
PspN4I	GGNNCC	1 cut(s)	518
PstI	CTGCAG	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	363
SatI	GCNGC	2 cut(s)	58, 203
Sau3AI	GATC	3 cut(s)	3, 195, 549
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	77, 186
SetI	ASST	7 cut(s)	62, 160, 343, 395, 435, 465, 522
SfaNI	GCATC	2 cut(s)	111, 286
SfcI	CTRYAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	346, 403
SsiI	CCGC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	110, 516
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	77
TasI	AATT	2 cut(s)	346, 403
TfiI	GAWTC	1 cut(s)	373
TseI	GCWGC	2 cut(s)	57, 202
TspGWI	ACGGA	9 cut(s)	79, 260, 265, 285, 290, 295, 349, 482, 484
VneI	GTGCAC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	403
XceI	RCATGY	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.