pycom13g18700

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
14747188 .. 14747717
530 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g18700.1

Sequence Viewer

Length: 435 bp
ATGTGCACAAATCTATTAGTGACACATCATTATTTTGTTAATTTTGTTTGTAAATTTAGTCTCTCTAACCATCTCCAAAGGAGATGTCAAATTTGCCAAATAGAATTAAGGTATCGTTTGGTATGCAGACGGGACGGGACGGGACATGACGGAATGGAACGGAGTGGAAGCAAAGATGCCCTCGGATGGAAACAAGGAGGAAGAAGGAGACGGAGAGGTTATAATTTTTCACCCAAAACTCGTCCCGTGGAACAGCTCGTTCCACCCGTTTTAGGCGCACCAAACGTGGGACGGAACGCCTTGTCCCACTCTGTTCCGTCTCGTCCCACGTACCAAACGGTACCTAAAAGACATTTAGTGTTCTCCAATGGATATGCCATATATGATGTGGCATGTGAGTCATTTGACTTCTTGCTTTCTAATTGCCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.52

Weight (kDa)

9.87

Isoelectric Point (pI)

73.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
Acc65I GGTACC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 340
AcsI RAATTY 2 cut(s) 53, 90
AfaI GTAC 2 cut(s) 332, 342
AfiI CCNNNNNNNGG 3 cut(s) 186, 272, 287
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 65, 202, 324
Alw44I GTGCAC 1 cut(s) 4
ApaLI GTGCAC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 53, 90
ArsI GACNNNNNNTTYG 2 cut(s) 70, 102
Asp718I GGTACC 1 cut(s) 340
AspLEI GCGC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 2 cut(s) 78, 180
BcoDI GTCTC 3 cut(s) 65, 202, 324
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 181, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 272, 287
BseDI CCNNGG 2 cut(s) 181, 246
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 3 cut(s) 186, 272, 287
BseSI GKGCMC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 7 cut(s) 146, 151, 156, 228, 289, 303, 309
BslI CCNNNNNNNGG 3 cut(s) 186, 272, 287
BsmAI GTCTC 3 cut(s) 65, 202, 324
BsmBI CGTCTC 2 cut(s) 202, 324
BsmFI GGGAC 7 cut(s) 146, 151, 156, 228, 289, 303, 309
Bsp1286I GDGCHC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 342
BspT107I GGYRCC 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 181, 246
Bst4CI ACNGT 1 cut(s) 340
BstBAI YACGTR 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 191
BstHHI GCGC 1 cut(s) 278
BstMAI GTCTC 3 cut(s) 65, 202, 324
BstNSI RCATGY 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 191
CfoI GCGC 1 cut(s) 278
Csp6I GTAC 2 cut(s) 331, 341
CviAII CATG 2 cut(s) 146, 393
CviJI RGCY 1 cut(s) 256
CviKI_1 RGCY 1 cut(s) 256
CviQI GTAC 2 cut(s) 331, 341
Esp3I CGTCTC 2 cut(s) 202, 324
FaeI CATG 2 cut(s) 149, 396
FaiI YATR 8 cut(s) 124, 147, 222, 375, 380, 382, 384, 394
FaqI GGGAC 7 cut(s) 146, 151, 156, 228, 289, 303, 309
FatI CATG 2 cut(s) 145, 392
FokI GGATG 1 cut(s) 198
GlaI GCGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 278
Hin1II CATG 2 cut(s) 149, 396
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 1 cut(s) 398
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 2 cut(s) 285, 329
HpyCH4V TGCA 2 cut(s) 6, 126
HpySE526I ACGT 2 cut(s) 285, 329
Hsp92II CATG 2 cut(s) 149, 396
HspAI GCGC 1 cut(s) 276
KpnI GGTACC 1 cut(s) 344
LweI GCATC 1 cut(s) 166
MaeII ACGT 2 cut(s) 285, 329
MaeIII GTNAC 1 cut(s) 19
MboII GAAGA 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 6 cut(s) 40, 53, 90, 104, 223, 421
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 3 cut(s) 191, 191, 209
MseI TTAA 2 cut(s) 39, 107
NlaIII CATG 2 cut(s) 149, 396
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 330
PsiI TTATAA 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 342
RsaI GTAC 2 cut(s) 332, 342
RsaNI GTAC 2 cut(s) 331, 341
SaqAI TTAA 2 cut(s) 39, 107
SchI GAGTC 1 cut(s) 407
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 113, 220, 258, 288, 332, 346
SfaNI GCATC 1 cut(s) 166
Sse9I AATT 6 cut(s) 40, 53, 90, 104, 223, 421
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 2 cut(s) 288, 332
TasI AATT 6 cut(s) 40, 53, 90, 104, 223, 421
Tru1I TTAA 2 cut(s) 39, 107
Tru9I TTAA 2 cut(s) 39, 107
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspGWI ACGGA 5 cut(s) 165, 175, 226, 306, 307
VneI GTGCAC 1 cut(s) 4
XapI RAATTY 2 cut(s) 53, 90
XceI RCATGY 1 cut(s) 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.