Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001410

Physical Location & Seq

Genomic Coordinates Reverse (-)

12103450 .. 12103737

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAAACGGGACGAGATGGGACATGACGGAACGGAACAGAGCGGGAGCAAAGATGCCCTCGGATGGAAACAAGGAGGAAGAAGAAGGAGACGGAGATGTTATAATTTTGTGTTCCACGGATGTGGAACGAGTCGTTCCAGGGGGGTGAGGTGGAATGAAAATTCACCCAAAACTCGTCCCGTGGAACAGCTCGTTCCACCCGTTTTAGGCGCACCAAACGTGGGACGGAACGCCTTATCCCACTCTGTTCCGTCCCGTCCCACGTACCAAACGGTACCAGATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

96

Amino Acids

10.65

Weight (kDa)

10.82

Isoelectric Point (pI)

97.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001410)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Species

Orthologous Gene IDs

pyrus_communis

pycom01g05420 pycom01g06550 pycom01g06870 pycom01g08080 pycom01g08570 pycom01g09470 pycom02g02660 pycom02g08200 pycom02g11900 pycom02g22210 pycom02g22360 pycom02g24960 pycom02g25680 pycom03g00220 pycom04g13360 pycom05g09060 pycom05g14220 pycom05g15180 pycom05g19710 pycom05g21810 pycom05g28580 pycom06g18880 pycom07g03710 pycom07g03870 pycom07g08310 pycom07g23160 pycom07g23200 pycom08g09480 pycom09g10710 pycom10g05060 pycom10g26630 pycom10g28210 pycom11g11050 pycom11g15130 pycom11g19210 pycom12g07930 pycom12g21370 pycom13g03500 pycom13g10600 pycom13g18700 pycom13g19700 pycom13g24060 pycom14g00430 pycom15g07010 pycom15g26870 pycom15g30340 pycom15g31320 pycom16g09070 pycom16g16170 pycom16g25330 pycom17g02990 pycom17g03830 pycom17g18350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	42
AciI	CCGC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	160
AfaI	GTAC	2 cut(s)	266, 276
AfiI	CCNNNNNNNGG	3 cut(s)	63, 206, 221
AjnI	CCWGG	1 cut(s)	137
AleI	CACNNNNGTG	1 cut(s)	120
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	2 cut(s)	190, 285
AluI	AGCT	2 cut(s)	190, 285
Alw26I	GTCTC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	160
Asp718I	GGTACC	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	156, 157
BanI	GGYRCC	1 cut(s)	274
BccI	CCATC	2 cut(s)	10, 57
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	264
BsaJI	CCNNGG	4 cut(s)	58, 115, 138, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 206, 221
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	4 cut(s)	58, 115, 138, 180
BseGI	GGATG	2 cut(s)	68, 125
BseLI	CCNNNNNNNGG	3 cut(s)	63, 206, 221
BshNI	GGYRCC	1 cut(s)	274
BslFI	GGGAC	6 cut(s)	23, 33, 162, 237, 238, 243
BslI	CCNNNNNNNGG	3 cut(s)	63, 206, 221
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	6 cut(s)	23, 33, 162, 237, 238, 243
BspACI	CCGC	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	274
BsrBI	CCGCTC	1 cut(s)	42
BssECI	CCNNGG	4 cut(s)	58, 115, 138, 180
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	264
BstDSI	CCRYGG	2 cut(s)	115, 180
BstF5I	GGATG	2 cut(s)	68, 125
BstHHI	GCGC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	122
BtgI	CCRYGG	2 cut(s)	115, 180
BtsCI	GGATG	2 cut(s)	68, 125
CfoI	GCGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	265, 275
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	2 cut(s)	190, 285
CviKI_1	RGCY	2 cut(s)	190, 285
CviQI	GTAC	2 cut(s)	265, 275
EcoRII	CCWGG	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	1 cut(s)	26
FaiI	YATR	2 cut(s)	24, 102
FaqI	GGGAC	6 cut(s)	23, 33, 162, 237, 238, 243
FatI	CATG	1 cut(s)	22
FauI	CCCGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	75, 132
GlaI	GCGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	2 cut(s)	156, 157
Hpy188I	TCNGA	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	219, 263
HpySE526I	ACGT	2 cut(s)	219, 263
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	210
KpnI	GGTACC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	2 cut(s)	124, 151
LweI	GCATC	1 cut(s)	43
MaeII	ACGT	2 cut(s)	219, 263
MbiI	CCGCTC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	90, 93
MluCI	AATT	2 cut(s)	103, 160
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	3 cut(s)	68, 68, 141
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	276
OliI	CACNNNNGTG	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Ppu21I	YACGTR	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	276
RsaI	GTAC	2 cut(s)	266, 276
RsaNI	GTAC	2 cut(s)	265, 275
RseI	CAYNNNNRTG	1 cut(s)	120
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	5 cut(s)	152, 192, 222, 266, 287
SfaNI	GCATC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	103, 160
SsiI	CCGC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	222, 266
TasI	AATT	2 cut(s)	103, 160
TspDTI	ATGAA	2 cut(s)	17, 171
TspGWI	ACGGA	6 cut(s)	42, 47, 106, 132, 240, 241
XapI	RAATTY	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.