Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

1143268 .. 1144719

Gene Structure 1452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCACCAATTGGGAGCATGGGAATAGCCGATTTGGGTTGCTCATCTGGACCAAACACCTTCCTTCTCATCTCCGAAATAATTGATGCCATCCGTGCCACACGTAGCAGCTCATCATCATTCACAGAATTTAGAGTGTTTCTAAACGACCTCTTTAGCAACGACTTCAACACCATTTTTATGTCACTCCCCGCATTCTACAACCAACTAAAGGAAGAAAATGGTGCTGGACTCGGGTCTTTCTTTGTCTCCGCCACGCCGGGCTCGTTTTACGGCAGGTTGTTTCCAGCCAAGAGTTTGCACTTCGTGCACTCTTCTTCTAGTCTTCATTGGCGCTCTCAGGTCCCTCATGGCCTGGATCTCCAGGCAGCTGGCAAAGCGTTGAACAAAGGAAAGATTTGGATTTCTAAGACCAGCCCCCAATGCGTTTTGGATGCATATTCATTTCAATTTCACAAGGATTTTTCGTTATTTCTCAAGTCCCGGGCTGAAGAAATAATTGGTGGAGGACGGATGGTGTTGTCAATCCCAGGCAGGTCATCCTCTGACCCATCAACTCCAGAGAGCTGCTGCCAGTGGGATCTCCTAGCTCATGCATTAATGACCATGGTTTCAGAGGGTCTTATTGAAGAGGAAAAGGTTGATTCCTTCAACCTTCCGTACTATGTCCCAAGTGAAGAGGAAGTGAAGCTGGAGTTAGAAAAAGAAGGATCATTTATAATAGACCGCTTTGAAGCCTTTGAAATTGATTGGGATGGTGGTGCGGAAACAACCGTCGTAGCCAGTGGTCAGCGAATGGCCAAGACCATAAGAGCTGTGGTTGAGTCGATGATCGAATCTCATTTTGAAAAAAATATCATGGACGATCTGTTTCGTCGGTACGCCGAGCTCATCGCCGACCACTTATCAAAATCTAGAACCAAGTTCCTCAATTTGTTTTTTTCAGTCATTAGAAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

321

Amino Acids

35.71

Weight (kDa)

5.36

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	6 - 317	1.2e-124	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
Acc36I	ACCTGC	2 cut(s)	267, 525
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	4 cut(s)	192, 252, 727, 764
AclWI	GGATC	3 cut(s)	366, 588, 718
AcoI	YGGCCR	1 cut(s)	798
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	510
AdeI	CACNNNGTG	1 cut(s)	307
AfaI	GTAC	2 cut(s)	662, 881
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	8 cut(s)	169, 385, 449, 629, 652, 734, 743, 848
AjnI	CCWGG	3 cut(s)	354, 363, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	7 cut(s)	111, 371, 567, 590, 691, 815, 889
AluI	AGCT	7 cut(s)	111, 371, 567, 590, 691, 815, 889
Alw21I	GWGCWC	2 cut(s)	312, 891
Alw26I	GTCTC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	308
AlwI	GGATC	3 cut(s)	366, 588, 718
Ama87I	CYCGRG	2 cut(s)	233, 483
AoxI	GGCC	2 cut(s)	352, 798
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	4 cut(s)	108, 368, 567, 570
ApoI	RAATTY	1 cut(s)	128
AseI	ATTAAT	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	50, 343
AsuC2I	CCSGG	3 cut(s)	261, 484, 485
AvaI	CYCGRG	2 cut(s)	233, 483
AvaII	GGWCC	2 cut(s)	50, 343
BaeGI	GKGCMC	1 cut(s)	312
BalI	TGGCCA	1 cut(s)	800
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	266, 891
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	2 cut(s)	312, 891
BbvI	GCAGC	4 cut(s)	120, 380, 554, 557
BccI	CCATC	4 cut(s)	98, 508, 559, 749
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	3 cut(s)	356, 365, 531
BcnI	CCSGG	3 cut(s)	261, 484, 485
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	3 cut(s)	321, 587, 915
BfoI	RGCGCY	1 cut(s)	337
BfuAI	ACCTGC	2 cut(s)	267, 525
BisI	GCNGC	4 cut(s)	109, 369, 568, 571
BlsI	GCNGC	4 cut(s)	110, 370, 569, 572
Bme1390I	CCNGG	6 cut(s)	261, 356, 365, 484, 485, 531
Bme18I	GGWCC	2 cut(s)	50, 343
BmeT110I	CYCGRG	2 cut(s)	233, 483
BmgT120I	GGNCC	2 cut(s)	50, 343
BmiI	GGNNCC	2 cut(s)	6, 345
BmrFI	CCNGG	6 cut(s)	261, 356, 365, 484, 485, 531
BmsI	GCATC	2 cut(s)	76, 424
BoxI	GACNNNNGTC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	317
BpmI	CTGGAG	3 cut(s)	347, 543, 713
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	3 cut(s)	261, 484, 485
BsaAI	YACGTR	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	483, 529, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	574, 783
BseBI	CCWGG	3 cut(s)	356, 365, 531
BseDI	CCNNGG	3 cut(s)	483, 529, 606
BseGI	GGATG	5 cut(s)	90, 439, 519, 539, 760
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	2 cut(s)	574, 783
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	4 cut(s)	120, 380, 554, 557
BshFI	GGCC	2 cut(s)	354, 800
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	312, 891
BsiHKCI	CYCGRG	2 cut(s)	233, 483
BsiSI	CCGG	2 cut(s)	260, 484
BslFI	GGGAC	3 cut(s)	329, 466, 653
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	3 cut(s)	329, 466, 653
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	354, 800
BsoBI	CYCGRG	2 cut(s)	233, 483
Bsp1286I	GDGCHC	3 cut(s)	266, 312, 891
Bsp143I	GATC	5 cut(s)	358, 580, 710, 831, 865
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	4 cut(s)	192, 252, 727, 764
BspANI	GGCC	2 cut(s)	354, 800
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	6, 345
BspMI	ACCTGC	2 cut(s)	267, 525
BspPI	GGATC	3 cut(s)	366, 588, 718
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	574, 783
BssECI	CCNNGG	3 cut(s)	483, 529, 606
BssMI	GATC	5 cut(s)	358, 580, 710, 831, 865
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	3 cut(s)	356, 365, 531
Bst4CI	ACNGT	1 cut(s)	775
Bst6I	CTCTTC	3 cut(s)	319, 624, 672
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	339, 408
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	5 cut(s)	90, 439, 519, 539, 760
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	5 cut(s)	361, 583, 713, 834, 868
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	5 cut(s)	358, 580, 710, 831, 865
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 307, 377, 423
BstNI	CCWGG	3 cut(s)	356, 365, 531
BstPAI	GACNNNNGTC	1 cut(s)	235
BstSCI	CCNGG	6 cut(s)	259, 354, 363, 482, 483, 529
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	4 cut(s)	120, 380, 554, 557
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	2 cut(s)	358, 580
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	2 cut(s)	358, 580
BsuRI	GGCC	2 cut(s)	354, 800
BtgI	CCRYGG	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	877
BtsCI	GGATG	5 cut(s)	90, 439, 519, 539, 760
BtsIMutI	CAGTG	2 cut(s)	581, 790
BveI	ACCTGC	2 cut(s)	267, 525
Cac8I	GCNNGC	1 cut(s)	373
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	50, 343
Cfr9I	CCCGGG	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	661, 880
CviAII	CATG	5 cut(s)	19, 350, 593, 607, 859
CviQI	GTAC	2 cut(s)	661, 880
DdeI	CTNAG	2 cut(s)	339, 408
DpnI	GATC	5 cut(s)	360, 582, 712, 833, 867
DpnII	GATC	5 cut(s)	358, 580, 710, 831, 865
DraIII	CACNNNGTG	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	798
Eam1104I	CTCTTC	3 cut(s)	319, 624, 672
EarI	CTCTTC	3 cut(s)	319, 624, 672
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	889
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	2 cut(s)	266, 891
Eco47I	GGWCC	2 cut(s)	50, 343
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	2 cut(s)	233, 483
EcoICRI	GAGCTC	1 cut(s)	889
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	3 cut(s)	354, 363, 529
EcoT14I	CCWWGG	1 cut(s)	606
EcoT22I	ATGCAT	2 cut(s)	439, 598
EcoT38I	GRGCYC	2 cut(s)	266, 891
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	5 cut(s)	22, 353, 596, 610, 862
FaqI	GGGAC	3 cut(s)	329, 466, 653
FatI	CATG	5 cut(s)	18, 349, 592, 606, 858
FauI	CCCGC	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	109, 369, 568, 571
FokI	GGATG	5 cut(s)	77, 446, 526, 526, 767
FriOI	GRGCYC	2 cut(s)	266, 891
Fsp4HI	GCNGC	4 cut(s)	109, 369, 568, 571
FspBI	CTAG	3 cut(s)	321, 587, 915
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	4 cut(s)	109, 369, 568, 571
GsuI	CTGGAG	3 cut(s)	347, 543, 713
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	2 cut(s)	354, 800
HapII	CCGG	2 cut(s)	260, 484
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	5 cut(s)	22, 353, 596, 610, 862
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	231, 644, 824, 836
HpaII	CCGG	2 cut(s)	260, 484
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	76, 547, 616
Hpy188III	TCNNGA	3 cut(s)	48, 560, 915
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	2 cut(s)	779, 879
HpyAV	CCTTC	5 cut(s)	70, 74, 658, 665, 701
HpyCH4III	ACNGT	1 cut(s)	775
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	301, 310, 437, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 307, 377, 423
HpyF3I	CTNAG	2 cut(s)	339, 408
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	5 cut(s)	22, 353, 596, 610, 862
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	358, 580, 710, 831, 865
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	4 cut(s)	120, 380, 554, 557
LweI	GCATC	2 cut(s)	76, 424
MaeI	CTAG	3 cut(s)	321, 587, 915
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	5 cut(s)	360, 582, 712, 833, 867
MboI	GATC	5 cut(s)	358, 580, 710, 831, 865
MboII	GAAGA	7 cut(s)	227, 306, 309, 317, 503, 641, 689
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	2 cut(s)	358, 580
MhlI	GDGCHC	3 cut(s)	266, 312, 891
MlsI	TGGCCA	1 cut(s)	800
MluCI	AATT	7 cut(s)	9, 81, 128, 449, 498, 744, 931
MluNI	TGGCCA	1 cut(s)	800
MlyI	GAGTC	2 cut(s)	225, 833
MnlI	CCTC	8 cut(s)	161, 357, 500, 553, 610, 625, 673, 938
Mox20I	TGGCCA	1 cut(s)	800
Mph1103I	ATGCAT	2 cut(s)	439, 598
MscI	TGGCCA	1 cut(s)	800
MseI	TTAA	1 cut(s)	599
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	800
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	2 cut(s)	260, 484
MspR9I	CCNGG	6 cut(s)	261, 356, 365, 484, 485, 531
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	3 cut(s)	356, 365, 531
MwoI	GCNNNNNNNGC	4 cut(s)	95, 307, 377, 423
NciI	CCSGG	3 cut(s)	261, 484, 485
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	5 cut(s)	358, 580, 710, 831, 865
NlaIII	CATG	5 cut(s)	22, 353, 596, 610, 862
NlaIV	GGNNCC	2 cut(s)	6, 345
NmeAIII	GCCGAG	1 cut(s)	910
NmuCI	GTSAC	1 cut(s)	183
NsiI	ATGCAT	2 cut(s)	439, 598
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	644, 836
PkrI	GCNGC	4 cut(s)	110, 370, 569, 572
PleI	GAGTC	2 cut(s)	225, 832
PpsI	GAGTC	2 cut(s)	225, 832
Ppu21I	YACGTR	1 cut(s)	104
PpuMI	RGGWCCY	1 cut(s)	343
PshAI	GACNNNNGTC	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	599
PsiI	TTATAA	1 cut(s)	719
Psp124BI	GAGCTC	1 cut(s)	891
Psp5II	RGGWCCY	1 cut(s)	343
Psp6I	CCWGG	3 cut(s)	354, 363, 529
PspGI	CCWGG	3 cut(s)	354, 363, 529
PspN4I	GGNNCC	2 cut(s)	6, 345
PspPI	GGNCC	2 cut(s)	50, 343
PspPPI	RGGWCCY	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	358, 580
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	2 cut(s)	662, 881
RsaNI	GTAC	2 cut(s)	661, 880
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	891
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	4 cut(s)	109, 369, 568, 571
Sau3AI	GATC	5 cut(s)	358, 580, 710, 831, 865
Sau96I	GGNCC	2 cut(s)	50, 343
SchI	GAGTC	2 cut(s)	225, 833
ScrFI	CCNGG	6 cut(s)	261, 356, 365, 484, 485, 531
SduI	GDGCHC	3 cut(s)	266, 312, 891
SfaNI	GCATC	2 cut(s)	76, 424
SinI	GGWCC	2 cut(s)	50, 343
SmaI	CCCGGG	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	7 cut(s)	9, 81, 128, 449, 498, 744, 931
SsiI	CCGC	4 cut(s)	192, 252, 727, 764
SspMI	CTAG	3 cut(s)	321, 587, 915
SstI	GAGCTC	1 cut(s)	891
StyD4I	CCNGG	6 cut(s)	259, 354, 363, 482, 483, 529
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	1 cut(s)	775
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	827, 834
TasI	AATT	7 cut(s)	9, 81, 128, 449, 498, 744, 931
TfiI	GAWTC	2 cut(s)	644, 836
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	2 cut(s)	581, 790
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	4 cut(s)	108, 368, 567, 570
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	2 cut(s)	317, 432
TspGWI	ACGGA	3 cut(s)	83, 526, 648
TspMI	CCCGGG	1 cut(s)	483
TspRI	CASTG	2 cut(s)	581, 790
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	50, 343
VspI	ATTAAT	1 cut(s)	599
XapI	RAATTY	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XmaI	CCCGGG	1 cut(s)	483
XspI	CTAG	3 cut(s)	321, 587, 915
Zsp2I	ATGCAT	2 cut(s)	439, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.