pycom15g01970

Jasmonate

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
1150833 .. 1152536
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1104 bp
ATGGAGGTGCTGCAAATACTTCACATGAACAAAGGGAACGGCGAGACTAGTTATGCTCAAAACTCTAAAGTTCAGGAAAATATATTATCCATCGCAAAGCCAATCGTTGATGAAGCTGTACAAAAATTGTTGTGCTCAAATATGGCACCAATTGGGAGCATGGGAATAGCCGATTTGGGTTGCTCATCTGGACCAAACACCTTCCTTCTCATCTCCGAAATAATTGATGCCATCCGTGCCACACGTAGCAGCTCATCATCATTCACAGAATTTAGAGTGTTTCTAAACGACCTCTTTAGCAACGACTTCAACACCATTTTTATGTCACTCCCCGCATTCTACAACCAACTAAAGGAAGAAAATGGTGCTGGACTCGGGTCTTTCTTTGTCTCCGCCACGCCGGGCTCGTTTTACGGCAGGTTGTTTCCAGCCAAGAGTTTGCACTTCGTGCACTCTTCTTCTAGTCTTCATTGGCGCTCTCAGGTCCCTCATGGCCTGGATCTCCAGGCAGCTGGCAAAGCGTTGAACAAAGGAAAGATTTGGATTTCTAAGACCAGCCCCCAATGCGTTTTGGATGCATATTCATTTCAATTTCACAAGGATTTTTCGTTATTTCTCAAGTCCCGGGCTGAAGAAATAATTGGTGGAGGACGGATGGTGTTGTCAATCCCAGGCAGGTCATCCTCTGACCCATCAACTCCAGAGAGCTGCTACCAGTGGGATCTCCTAGCTCATGCTTTAATGACCATGGTTTCAGAGGGTCTTATTGAAGAGGAAAAGGTTGATTCCTTCAACCTTCCGTACTATGTCCCAAGTGAAGAGGAAGTGAAGCTGGAGTTAGAAAAAGAAGGATCATTTATAATAGACCGCTTTGAAGCCTTTGAAATTGATTGGGATGGTGGTGCGGAAACAACCGCCGTAGCCAGTGGTCAGCGAGTGGCCAAGACCATAAGAGCTGTGGTTGAGTCGATGATCGAATCTCATTTTGAAAAAAATATCATGGATGATCTGTTTCGTCGGTACGCCGAGCTCATCGCCGACCACTTATCAAAATCTAGAACCAAGTTCCTCAATTTGTTTTTTTCAGTCATTAGAAAGGACTGA

Protein Analysis

368

Amino Acids

40.9

Weight (kDa)

5.38

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 38 - 364 9e-127 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 860
Acc36I ACCTGC 2 cut(s) 408, 666
AccB1I GGYRCC 1 cut(s) 145
AciI CCGC 5 cut(s) 333, 393, 868, 905, 915
AclWI GGATC 3 cut(s) 507, 729, 859
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 651
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 3 cut(s) 120, 803, 1022
AfiI CCNNNNNNNGG 1 cut(s) 352
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 8 cut(s) 310, 526, 590, 770, 793, 875, 884, 989
AhlI ACTAGT 1 cut(s) 47
AjnI CCWGG 3 cut(s) 495, 504, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
AluBI AGCT 8 cut(s) 116, 252, 512, 708, 731, 832, 956, 1030
AluI AGCT 8 cut(s) 116, 252, 512, 708, 731, 832, 956, 1030
Alw21I GWGCWC 3 cut(s) 137, 453, 1032
Alw26I GTCTC 2 cut(s) 38, 394
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 3 cut(s) 507, 729, 859
Ama87I CYCGRG 2 cut(s) 374, 624
AoxI GGCC 2 cut(s) 493, 939
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 4 cut(s) 10, 249, 509, 708
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 191, 484
AsuC2I CCSGG 3 cut(s) 402, 625, 626
AvaI CYCGRG 2 cut(s) 374, 624
AvaII GGWCC 2 cut(s) 191, 484
BaeGI GKGCMC 1 cut(s) 453
BalI TGGCCA 1 cut(s) 941
BanI GGYRCC 1 cut(s) 145
BanII GRGCYC 2 cut(s) 407, 1032
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 3 cut(s) 137, 453, 1032
BbvI GCAGC 3 cut(s) 261, 521, 695
BccI CCATC 5 cut(s) 98, 239, 649, 700, 890
BceAI ACGGC 3 cut(s) 55, 430, 902
BciT130I CCWGG 3 cut(s) 497, 506, 672
BcnI CCSGG 3 cut(s) 402, 625, 626
BcoDI GTCTC 2 cut(s) 38, 394
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 4 cut(s) 48, 462, 728, 1056
BfoI RGCGCY 1 cut(s) 478
BfuAI ACCTGC 2 cut(s) 408, 666
BisI GCNGC 4 cut(s) 11, 250, 510, 709
BlsI GCNGC 4 cut(s) 12, 251, 511, 710
Bme1390I CCNGG 6 cut(s) 402, 497, 506, 625, 626, 672
Bme18I GGWCC 2 cut(s) 191, 484
BmeT110I CYCGRG 2 cut(s) 374, 624
BmgT120I GGNCC 2 cut(s) 191, 484
BmiI GGNNCC 2 cut(s) 147, 486
BmrFI CCNGG 6 cut(s) 402, 497, 506, 625, 626, 672
BmsI GCATC 2 cut(s) 217, 565
BoxI GACNNNNGTC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 458
BpmI CTGGAG 3 cut(s) 488, 684, 854
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 3 cut(s) 402, 625, 626
BsaAI YACGTR 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 624, 670, 747
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 715, 924
BseBI CCWGG 3 cut(s) 497, 506, 672
BseDI CCNNGG 3 cut(s) 624, 670, 747
BseGI GGATG 6 cut(s) 231, 580, 660, 680, 901, 1009
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 715, 924
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 3 cut(s) 261, 521, 695
BshFI GGCC 2 cut(s) 495, 941
BshNI GGYRCC 1 cut(s) 145
BsiHKAI GWGCWC 3 cut(s) 137, 453, 1032
BsiHKCI CYCGRG 2 cut(s) 374, 624
BsiSI CCGG 2 cut(s) 401, 625
BslFI GGGAC 3 cut(s) 470, 607, 794
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 2 cut(s) 38, 394
BsmFI GGGAC 3 cut(s) 470, 607, 794
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 2 cut(s) 495, 941
BsoBI CYCGRG 2 cut(s) 374, 624
Bsp1286I GDGCHC 4 cut(s) 137, 407, 453, 1032
Bsp1407I TGTACA 1 cut(s) 118
Bsp143I GATC 5 cut(s) 499, 721, 851, 972, 1006
Bsp19I CCATGG 1 cut(s) 747
BspACI CCGC 5 cut(s) 333, 393, 868, 905, 915
BspANI GGCC 2 cut(s) 495, 941
BspCNI CTCAG 1 cut(s) 493
BspLI GGNNCC 2 cut(s) 147, 486
BspMI ACCTGC 2 cut(s) 408, 666
BspPI GGATC 3 cut(s) 507, 729, 859
BspT107I GGYRCC 1 cut(s) 145
BsrGI TGTACA 1 cut(s) 118
BsrI ACTGG 2 cut(s) 715, 924
BssECI CCNNGG 3 cut(s) 624, 670, 747
BssMI GATC 5 cut(s) 499, 721, 851, 972, 1006
BssT1I CCWWGG 1 cut(s) 747
Bst2UI CCWGG 3 cut(s) 497, 506, 672
Bst6I CTCTTC 3 cut(s) 460, 765, 813
BstAPI GCANNNNNTGC 1 cut(s) 448
BstAUI TGTACA 1 cut(s) 118
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 2 cut(s) 480, 549
BstDSI CCRYGG 1 cut(s) 747
BstF5I GGATG 6 cut(s) 231, 580, 660, 680, 901, 1009
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 5 cut(s) 502, 724, 854, 975, 1009
BstMAI GTCTC 2 cut(s) 38, 394
BstMBI GATC 5 cut(s) 499, 721, 851, 972, 1006
BstMWI GCNNNNNNNGC 4 cut(s) 236, 448, 518, 564
BstNI CCWGG 3 cut(s) 497, 506, 672
BstPAI GACNNNNGTC 1 cut(s) 376
BstSCI CCNGG 6 cut(s) 400, 495, 504, 623, 624, 670
BstSLI GKGCMC 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 261, 521, 695
BstV2I GAAGAC 1 cut(s) 458
BstX2I RGATCY 2 cut(s) 499, 721
BstXI CCANNNNNNTGG 1 cut(s) 512
BstYI RGATCY 2 cut(s) 499, 721
BsuRI GGCC 2 cut(s) 495, 941
BtgI CCRYGG 1 cut(s) 747
BtgZI GCGATG 2 cut(s) 76, 1018
BtsCI GGATG 6 cut(s) 231, 580, 660, 680, 901, 1009
BtsIMutI CAGTG 2 cut(s) 722, 931
BveI ACCTGC 2 cut(s) 408, 666
Cac8I GCNNGC 1 cut(s) 514
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 191, 484
Cfr9I CCCGGG 1 cut(s) 624
Csp6I GTAC 3 cut(s) 119, 802, 1021
CviAII CATG 6 cut(s) 25, 160, 491, 734, 748, 1000
CviQI GTAC 3 cut(s) 119, 802, 1021
DdeI CTNAG 2 cut(s) 480, 549
DpnI GATC 5 cut(s) 501, 723, 853, 974, 1008
DpnII GATC 5 cut(s) 499, 721, 851, 972, 1006
DraIII CACNNNGTG 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 3 cut(s) 460, 765, 813
EarI CTCTTC 3 cut(s) 460, 765, 813
EciI GGCGGA 1 cut(s) 382
Ecl136II GAGCTC 1 cut(s) 1030
Eco130I CCWWGG 1 cut(s) 747
Eco24I GRGCYC 2 cut(s) 407, 1032
Eco47I GGWCC 2 cut(s) 191, 484
Eco53kI GAGCTC 1 cut(s) 1030
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 2 cut(s) 374, 624
EcoICRI GAGCTC 1 cut(s) 1030
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 3 cut(s) 495, 504, 670
EcoT14I CCWWGG 1 cut(s) 747
EcoT22I ATGCAT 1 cut(s) 580
EcoT38I GRGCYC 2 cut(s) 407, 1032
ErhI CCWWGG 1 cut(s) 747
FaeI CATG 6 cut(s) 28, 163, 494, 737, 751, 1003
FaqI GGGAC 3 cut(s) 470, 607, 794
FatI CATG 6 cut(s) 24, 159, 490, 733, 747, 999
FauI CCCGC 1 cut(s) 340
Fnu4HI GCNGC 4 cut(s) 11, 250, 510, 709
FokI GGATG 6 cut(s) 218, 587, 667, 667, 908, 1016
FriOI GRGCYC 2 cut(s) 407, 1032
Fsp4HI GCNGC 4 cut(s) 11, 250, 510, 709
FspBI CTAG 4 cut(s) 48, 462, 728, 1056
GlaI GCGC 1 cut(s) 476
GluI GCNGC 4 cut(s) 11, 250, 510, 709
GsuI CTGGAG 3 cut(s) 488, 684, 854
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 2 cut(s) 495, 941
HapII CCGG 2 cut(s) 401, 625
HhaI GCGC 1 cut(s) 477
Hin1II CATG 6 cut(s) 28, 163, 494, 737, 751, 1003
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HinfI GANTC 4 cut(s) 372, 785, 965, 977
HpaII CCGG 2 cut(s) 401, 625
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 3 cut(s) 217, 688, 757
Hpy188III TCNNGA 4 cut(s) 74, 189, 701, 1056
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 1 cut(s) 1020
HpyAV CCTTC 5 cut(s) 211, 215, 799, 806, 842
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 4 cut(s) 13, 442, 451, 578
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 448, 518, 564
HpyF3I CTNAG 2 cut(s) 480, 549
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 6 cut(s) 28, 163, 494, 737, 751, 1003
HspAI GCGC 1 cut(s) 475
Kzo9I GATC 5 cut(s) 499, 721, 851, 972, 1006
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 3 cut(s) 261, 521, 695
LweI GCATC 2 cut(s) 217, 565
MaeI CTAG 4 cut(s) 48, 462, 728, 1056
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 324
MalI GATC 5 cut(s) 501, 723, 853, 974, 1008
MboI GATC 5 cut(s) 499, 721, 851, 972, 1006
MboII GAAGA 7 cut(s) 368, 447, 450, 458, 644, 782, 830
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 2 cut(s) 499, 721
MhlI GDGCHC 4 cut(s) 137, 407, 453, 1032
MlsI TGGCCA 1 cut(s) 941
MluCI AATT 8 cut(s) 125, 150, 222, 269, 590, 639, 885, 1072
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 2 cut(s) 366, 974
MnlI CCTC 8 cut(s) 302, 498, 641, 694, 751, 766, 814, 1079
Mox20I TGGCCA 1 cut(s) 941
Mph1103I ATGCAT 1 cut(s) 580
MscI TGGCCA 1 cut(s) 941
MseI TTAA 1 cut(s) 740
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 941
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 401, 625
MspR9I CCNGG 6 cut(s) 402, 497, 506, 625, 626, 672
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 3 cut(s) 497, 506, 672
MwoI GCNNNNNNNGC 4 cut(s) 236, 448, 518, 564
NciI CCSGG 3 cut(s) 402, 625, 626
NcoI CCATGG 1 cut(s) 747
NdeII GATC 5 cut(s) 499, 721, 851, 972, 1006
NlaIII CATG 6 cut(s) 28, 163, 494, 737, 751, 1003
NlaIV GGNNCC 2 cut(s) 147, 486
NmeAIII GCCGAG 1 cut(s) 1051
NmuCI GTSAC 1 cut(s) 324
NsiI ATGCAT 1 cut(s) 580
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 785, 977
PkrI GCNGC 4 cut(s) 12, 251, 511, 710
PleI GAGTC 2 cut(s) 366, 973
PpsI GAGTC 2 cut(s) 366, 973
Ppu21I YACGTR 1 cut(s) 245
PpuMI RGGWCCY 1 cut(s) 484
PshAI GACNNNNGTC 1 cut(s) 376
PsiI TTATAA 1 cut(s) 860
Psp124BI GAGCTC 1 cut(s) 1032
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 3 cut(s) 495, 504, 670
PspGI CCWGG 3 cut(s) 495, 504, 670
PspN4I GGNNCC 2 cut(s) 147, 486
PspPI GGNCC 2 cut(s) 191, 484
PspPPI RGGWCCY 1 cut(s) 484
PsuI RGATCY 2 cut(s) 499, 721
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 3 cut(s) 120, 803, 1022
RsaNI GTAC 3 cut(s) 119, 802, 1021
RseI CAYNNNNRTG 1 cut(s) 320
SacI GAGCTC 1 cut(s) 1032
SaqAI TTAA 1 cut(s) 740
SatI GCNGC 4 cut(s) 11, 250, 510, 709
Sau3AI GATC 5 cut(s) 499, 721, 851, 972, 1006
Sau96I GGNCC 2 cut(s) 191, 484
SchI GAGTC 2 cut(s) 366, 974
ScrFI CCNGG 6 cut(s) 402, 497, 506, 625, 626, 672
SduI GDGCHC 4 cut(s) 137, 407, 453, 1032
SfaNI GCATC 2 cut(s) 217, 565
SinI GGWCC 2 cut(s) 191, 484
SmaI CCCGGG 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 8 cut(s) 125, 150, 222, 269, 590, 639, 885, 1072
SsiI CCGC 5 cut(s) 333, 393, 868, 905, 915
SspMI CTAG 4 cut(s) 48, 462, 728, 1056
SstI GAGCTC 1 cut(s) 1032
StyD4I CCNGG 6 cut(s) 400, 495, 504, 623, 624, 670
StyI CCWWGG 1 cut(s) 747
TaiI ACGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 968, 975
TasI AATT 8 cut(s) 125, 150, 222, 269, 590, 639, 885, 1072
TatI WGTACW 1 cut(s) 118
TfiI GAWTC 2 cut(s) 785, 977
Tru1I TTAA 1 cut(s) 740
Tru9I TTAA 1 cut(s) 740
TscAI CASTG 2 cut(s) 722, 931
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 4 cut(s) 10, 249, 509, 708
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 4 cut(s) 41, 126, 458, 573
TspGWI ACGGA 3 cut(s) 224, 667, 789
TspMI CCCGGG 1 cut(s) 624
TspRI CASTG 2 cut(s) 722, 931
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 191, 484
XapI RAATTY 1 cut(s) 269
XbaI TCTAGA 1 cut(s) 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 955
XmaI CCCGGG 1 cut(s) 624
XspI CTAG 4 cut(s) 48, 462, 728, 1056
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.