Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001051

Physical Location & Seq

Genomic Coordinates Forward (+)

1178733 .. 1180578

Gene Structure 1846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGGTGCTGCAAATACTTCACATGAACCAAGGGAATGGCGAGACTAGTTATGCTCAAAACTCTAAAGTTCAGGGAAAAATATTATCTATAGCAAAGTCAATCATTGATGAAGCTGTACAAAAATTGTTGTGCTCAAATATAGCACCAATTGGGAGCATGGGAATAGCCGATTTGGGTTGCTCATCTGGACCAAACGCCTTCCTAGTTATATCTGATATAATTGATGCCATACATGCCACACATAGCAGCTCATCGTCATCCAGAGAGTTTAGAGTGTTTCTAAACGACCTCTTTAGCAACGACTTCAACACCATTTTTATGTCACTCCCGGCATTCTACAACCAACTGAAGAAAGAAAAAGGTGACAGATTCGAGTCTTTCTTTATCTCCGCTGTGCCGGGCTCGTTTTACGGTAGATTGTTTCCGGCCAAGTGTCTGCATTTCGTGCACTCCTCTTCTAGTCTTCATTGGCTCTCTCAGGTCCCTTCTGGCCTGGATTGCCAGGCAGGTGGCAGAGCGTTGAACAAAGGAAAGATTTACATTTCTAAGACCAGCCCCCAATGCGTTTTGGATGCATATTCACTTCAATTTCACAAGGACTTTTCATTATTTCTCAAGTCCCGAGCTGAAGAAATAGTTGGTGGAGGACGAATGGTATTGTCACTCATGGGCAGGTCGTCCTCAGACCCATCAACTCAAGAGAGCTGCTACCAGTGGGAACTCCTAGCTCATGCATTAATGAGCATGGTTTTAGAGGGCCTCATTGAAGAGGAAACGGTTGATTCCTTCAACGCTCCATATTATGCCCCAAGTGAAGAGGAACTGAAATTGGAGTTAGAAAATGAAGGATCATTTACGGTGGACCGCCTTGAAGCCTTTGAAATTGATTGGGATGGTGGTGCAGAGATATCTGTTGTAGCCAGTGGGCAGCGAGTGGCCAAGAACATAAGAGCTGTGGTTGAGTCGATAATCGAATCTCATTTCGGAAAAGATATCATGGATGATCTATTTCGTCGGTACGCCGAGCTGGTCGCAGATCACTTATCAAAATCTAGAACCAAGTACATCAATTTGGTTTTGTCGGTCATTAGAAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006950 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009611 GO:0009694 GO:0009987 GO:0010817 GO:0016740 GO:0016741 GO:0019752 GO:0030795 GO:0032259 GO:0032787 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

368

Amino Acids

40.66

Weight (kDa)

5.36

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	38 - 364	8e-129	SAM dependent carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19640
fragaria_vesca	FvH4_2g39441 FvH4_2g39441 FvH4_2g39450 FvH4_4g32530 FvH4_4g32530 FvH4_4g32530 FvH4_4g32960
malus_domestica	MD08G1027000.v1.1 MD08G1027100.v1.1 MD08G1027300.v1.1 MD15G1023600.v1.1 MD15G1023700.v1.1
prunus_persica	Prupe.1G375700_v2.0.a1 Prupe.1G375800_v2.0.a1
pyrus_communis	pycom08g02110 pycom15g01960 pycom15g01970 pycom15g02010
rosa_chinensis	RchiOBHm_Chr4g0441411 RchiOBHm_Chr6g0301501 RchiOBHm_Chr6g0301511 RchiOBHm_Chr6g0301521
rosa_laevigata	RLG00000006093 RLG00000006094 RLG00000011247 RLG00000011248
rosa_multiflora	Rmu_co8385149.1_g000001 Rmu_co8452201.1_g000002 Rmu_sc0004253.1_g000002 Rmu_sc0034371.1_g000001 Rmu_sc0038282.1_g000002 Rmu_ssc0000452.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235790 Rroxscaffold_5G00382280 Rroxscaffold_7G00166690 Rroxscaffold_7G00166700
rosa_rugosa	Rorug04G0333100 Rorug04G0333300 Rorug04G0333400 Rorug06G0305400 Rorug06G0305500 Rorug06G0305600 Rorug06G0305700 Rorug07G0216800 Rorug07G0217000
rosa_samantha	Rh4AG385100 Rh4BG399100 Rh4BG399200 Rh4CG414200 Rh4CG414300 Rh4DG391800 Rh6AG419400 Rh6BG425300 Rh6CG432500 Rh6DG418500 Rh6DG418600 Rh7BG350600
rosa_wichuraiana	Rw4G033250 Rw6G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	500
Acc36I	ACCTGC	2 cut(s)	500, 666
AciI	CCGC	2 cut(s)	393, 868
AclWI	GGATC	1 cut(s)	859
AcoI	YGGCCR	2 cut(s)	429, 939
AcuI	CTGAAG	2 cut(s)	371, 651
AfaI	GTAC	3 cut(s)	120, 1022, 1067
AgsI	TTSAA	7 cut(s)	310, 526, 590, 770, 793, 875, 884
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	2 cut(s)	495, 504
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	7 cut(s)	116, 252, 629, 708, 731, 956, 1030
AluI	AGCT	7 cut(s)	116, 252, 629, 708, 731, 956, 1030
Alw21I	GWGCWC	2 cut(s)	137, 453
Alw26I	GTCTC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	449
AlwI	GGATC	1 cut(s)	859
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	4 cut(s)	429, 493, 760, 939
ApaLI	GTGCAC	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	10, 249, 708, 931
AseI	ATTAAT	1 cut(s)	740
AspS9I	GGNCC	4 cut(s)	191, 484, 760, 865
AsuC2I	CCSGG	2 cut(s)	332, 402
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	3 cut(s)	191, 484, 865
BaeGI	GKGCMC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	941
BanII	GRGCYC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	137, 453
BbvI	GCAGC	3 cut(s)	261, 695, 943
BccI	CCATC	2 cut(s)	700, 890
BciT130I	CCWGG	2 cut(s)	497, 506
BcnI	CCSGG	2 cut(s)	332, 402
BcoDI	GTCTC	1 cut(s)	38
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	5 cut(s)	48, 206, 462, 728, 1056
BfmI	CTRYAG	1 cut(s)	90
BfuAI	ACCTGC	2 cut(s)	500, 666
BisI	GCNGC	4 cut(s)	11, 250, 709, 932
BlsI	GCNGC	4 cut(s)	12, 251, 710, 933
Bme1390I	CCNGG	4 cut(s)	332, 402, 497, 506
Bme18I	GGWCC	3 cut(s)	191, 484, 865
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	4 cut(s)	191, 484, 760, 865
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	4 cut(s)	332, 402, 497, 506
BmsI	GCATC	2 cut(s)	217, 565
BpiI	GAAGAC	1 cut(s)	458
BpuEI	CTTGAG	2 cut(s)	602, 684
BpuMI	CCSGG	2 cut(s)	332, 402
BsaJI	CCNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	715, 924
BseBI	CCWGG	2 cut(s)	497, 506
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	4 cut(s)	260, 580, 901, 1009
BseMII	CTCAG	2 cut(s)	494, 699
BseNI	ACTGG	2 cut(s)	715, 924
BseRI	GAGGAG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	3 cut(s)	261, 695, 943
BsgI	GTGCAG	1 cut(s)	924
BshFI	GGCC	4 cut(s)	431, 495, 762, 941
BsiHKAI	GWGCWC	2 cut(s)	137, 453
BsiHKCI	CYCGRG	1 cut(s)	624
BsiSI	CCGG	3 cut(s)	332, 401, 428
BslFI	GGGAC	2 cut(s)	470, 607
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	2 cut(s)	470, 607
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	4 cut(s)	431, 495, 762, 941
BsoBI	CYCGRG	1 cut(s)	624
Bsp1286I	GDGCHC	3 cut(s)	137, 407, 453
Bsp1407I	TGTACA	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	851, 1006, 1039
BspACI	CCGC	2 cut(s)	393, 868
BspANI	GGCC	4 cut(s)	431, 495, 762, 941
BspCNI	CTCAG	2 cut(s)	493, 698
BspLI	GGNNCC	1 cut(s)	486
BspMI	ACCTGC	2 cut(s)	500, 666
BspPI	GGATC	1 cut(s)	859
BsrGI	TGTACA	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	715, 924
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	851, 1006, 1039
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	497, 506
Bst4CI	ACNGT	3 cut(s)	416, 781, 862
Bst6I	CTCTTC	3 cut(s)	463, 765, 813
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstAUI	TGTACA	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	480, 549, 685
BstF5I	GGATG	4 cut(s)	260, 580, 901, 1009
BstKTI	GATC	3 cut(s)	854, 1009, 1042
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	3 cut(s)	851, 1006, 1039
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 448, 501, 564
BstNI	CCWGG	2 cut(s)	497, 506
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	4 cut(s)	330, 400, 495, 504
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	3 cut(s)	261, 695, 943
BstV2I	GAAGAC	1 cut(s)	458
BstXI	CCANNNNNNTGG	2 cut(s)	38, 512
BsuRI	GGCC	4 cut(s)	431, 495, 762, 941
BtsCI	GGATG	4 cut(s)	260, 580, 901, 1009
BtsIMutI	CAGTG	2 cut(s)	722, 931
BveI	ACCTGC	2 cut(s)	500, 666
Cfr13I	GGNCC	4 cut(s)	191, 484, 760, 865
Csp6I	GTAC	3 cut(s)	119, 1021, 1066
CviAII	CATG	7 cut(s)	25, 160, 236, 670, 734, 748, 1000
CviQI	GTAC	3 cut(s)	119, 1021, 1066
DdeI	CTNAG	3 cut(s)	480, 549, 685
DpnI	GATC	3 cut(s)	853, 1008, 1041
DpnII	GATC	3 cut(s)	851, 1006, 1039
EaeI	YGGCCR	2 cut(s)	429, 939
Eam1104I	CTCTTC	3 cut(s)	463, 765, 813
EarI	CTCTTC	3 cut(s)	463, 765, 813
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	407
Eco32I	GATATC	2 cut(s)	912, 997
Eco47I	GGWCC	3 cut(s)	191, 484, 865
Eco57I	CTGAAG	2 cut(s)	371, 651
Eco88I	CYCGRG	1 cut(s)	624
EcoO109I	RGGNCCY	2 cut(s)	484, 760
EcoRII	CCWGG	2 cut(s)	495, 504
EcoRV	GATATC	2 cut(s)	912, 997
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	2 cut(s)	580, 739
EcoT38I	GRGCYC	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	7 cut(s)	28, 163, 239, 673, 737, 751, 1003
FaqI	GGGAC	2 cut(s)	470, 607
FatI	CATG	7 cut(s)	24, 159, 235, 669, 733, 747, 999
Fnu4HI	GCNGC	4 cut(s)	11, 250, 709, 932
FokI	GGATG	4 cut(s)	247, 587, 908, 1016
FriOI	GRGCYC	1 cut(s)	407
Fsp4HI	GCNGC	4 cut(s)	11, 250, 709, 932
FspBI	CTAG	5 cut(s)	48, 206, 462, 728, 1056
GluI	GCNGC	4 cut(s)	11, 250, 709, 932
HaeIII	GGCC	4 cut(s)	431, 495, 762, 941
HapII	CCGG	3 cut(s)	332, 401, 428
Hin1II	CATG	7 cut(s)	28, 163, 239, 673, 737, 751, 1003
HinfI	GANTC	5 cut(s)	372, 377, 785, 965, 977
HpaII	CCGG	3 cut(s)	332, 401, 428
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	451, 865
Hpy188I	TCNGA	3 cut(s)	217, 688, 989
Hpy188III	TCNNGA	5 cut(s)	189, 264, 624, 701, 1056
Hpy8I	GTNNAC	2 cut(s)	451, 865
Hpy99I	CGWCG	1 cut(s)	1020
HpyAV	CCTTC	4 cut(s)	211, 498, 799, 842
HpyCH4III	ACNGT	3 cut(s)	416, 781, 862
HpyCH4V	TGCA	6 cut(s)	13, 442, 451, 578, 737, 905
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 448, 501, 564
HpyF3I	CTNAG	3 cut(s)	480, 549, 685
Hsp92II	CATG	7 cut(s)	28, 163, 239, 673, 737, 751, 1003
Kzo9I	GATC	3 cut(s)	851, 1006, 1039
LmnI	GCTCC	2 cut(s)	156, 802
Lsp1109I	GCAGC	3 cut(s)	261, 695, 943
LweI	GCATC	2 cut(s)	217, 565
MaeI	CTAG	5 cut(s)	48, 206, 462, 728, 1056
MaeIII	GTNAC	3 cut(s)	324, 365, 663
MalI	GATC	3 cut(s)	853, 1008, 1041
MboI	GATC	3 cut(s)	851, 1006, 1039
MboII	GAAGA	6 cut(s)	364, 450, 458, 644, 782, 830
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	3 cut(s)	137, 407, 453
MlsI	TGGCCA	1 cut(s)	941
MluCI	AATT	7 cut(s)	125, 150, 222, 590, 830, 885, 1072
MluNI	TGGCCA	1 cut(s)	941
MlyI	GAGTC	2 cut(s)	386, 974
MnlI	CCTC	8 cut(s)	302, 466, 641, 694, 751, 766, 773, 814
Mox20I	TGGCCA	1 cut(s)	941
Mph1103I	ATGCAT	2 cut(s)	580, 739
MscI	TGGCCA	1 cut(s)	941
MseI	TTAA	1 cut(s)	740
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	941
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	3 cut(s)	332, 401, 428
MspR9I	CCNGG	4 cut(s)	332, 402, 497, 506
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	2 cut(s)	497, 506
MwoI	GCNNNNNNNGC	4 cut(s)	236, 448, 501, 564
NciI	CCSGG	2 cut(s)	332, 402
NdeII	GATC	3 cut(s)	851, 1006, 1039
NlaIII	CATG	7 cut(s)	28, 163, 239, 673, 737, 751, 1003
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	1051
NmuCI	GTSAC	3 cut(s)	324, 365, 663
NsiI	ATGCAT	2 cut(s)	580, 739
NspI	RCATGY	1 cut(s)	239
PaqCI	CACCTGC	1 cut(s)	500
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	372, 785, 977
PkrI	GCNGC	4 cut(s)	12, 251, 710, 933
PleI	GAGTC	2 cut(s)	385, 973
PpsI	GAGTC	2 cut(s)	385, 973
PpuMI	RGGWCCY	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	740
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	2 cut(s)	495, 504
PspGI	CCWGG	2 cut(s)	495, 504
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	4 cut(s)	191, 484, 760, 865
PspPPI	RGGWCCY	1 cut(s)	484
RsaI	GTAC	3 cut(s)	120, 1022, 1067
RsaNI	GTAC	3 cut(s)	119, 1021, 1066
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	4 cut(s)	11, 250, 709, 932
Sau3AI	GATC	3 cut(s)	851, 1006, 1039
Sau96I	GGNCC	4 cut(s)	191, 484, 760, 865
SchI	GAGTC	2 cut(s)	386, 974
ScrFI	CCNGG	4 cut(s)	332, 402, 497, 506
SduI	GDGCHC	3 cut(s)	137, 407, 453
SfaNI	GCATC	2 cut(s)	217, 565
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	3 cut(s)	191, 484, 865
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	617, 699
SmoI	CTYRAG	2 cut(s)	617, 699
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	7 cut(s)	125, 150, 222, 590, 830, 885, 1072
SsiI	CCGC	2 cut(s)	393, 868
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	5 cut(s)	48, 206, 462, 728, 1056
StyD4I	CCNGG	4 cut(s)	330, 400, 495, 504
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	3 cut(s)	416, 781, 862
TaqI	TCGA	3 cut(s)	375, 968, 975
TaqII	GACCGA	1 cut(s)	1075
TasI	AATT	7 cut(s)	125, 150, 222, 590, 830, 885, 1072
TatI	WGTACW	2 cut(s)	118, 1065
TfiI	GAWTC	3 cut(s)	372, 785, 977
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TscAI	CASTG	2 cut(s)	722, 931
TseFI	GTSAC	3 cut(s)	324, 365, 663
TseI	GCWGC	4 cut(s)	10, 249, 708, 931
Tsp45I	GTSAC	3 cut(s)	324, 365, 663
TspDTI	ATGAA	5 cut(s)	41, 126, 458, 597, 861
TspRI	CASTG	2 cut(s)	722, 931
VneI	GTGCAC	1 cut(s)	449
VpaK11BI	GGWCC	3 cut(s)	191, 484, 865
VspI	ATTAAT	1 cut(s)	740
XbaI	TCTAGA	1 cut(s)	1055
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	5 cut(s)	48, 206, 462, 728, 1056
Zsp2I	ATGCAT	2 cut(s)	580, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.