Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

12886603 .. 12887305

Gene Structure 703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCAGCATCAGCTTCCATGCAATCGCTTCTAGCTAGCTCGGTAGTTTATGGAGCTGGAAGGAGCAGATCAGTGAGAGTTAGCCACCTTGTTCCTGCTAATAGGTTCCGCCACATGGTTGTCCGCTCAACGGCCGAGAAGGAGCAACCATCTTCTACAACACCAGAGGCATCCAAAATCCCACCACCGCCTCCTACACCTACACCTTTTCCTCCTCGTCCAAAGAAGGCCAGCACTAAGTTCTCAGATGTGTTTGCATTCAGTGGGCCAGCCCCGGAGAGAATCAACGGCAGACTTGCAATGGTAGGGTTTGTTTCAGCTTTGGCAGTGGAGCTATCCAAGGGCCAGGATGTGTTTTCTCAGATCTCCGACGGTGGAGTTTCGTTATTCCTTGGAACTAGTATTTTGCTCTCAGTGGCATCTGCGATTCCTCTATTCAAAGGAGTCAGCGTGGAGTCCAAATCAAATGGGCTCATGACGTCTGATGCCGAGCTCTGGAACGGAAGGTTGGCCATGTTAGGTTTGGTTGCTTTGGCGTTCACTGAGTATGTGAAGGGAGGGACTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

191

Amino Acids

19.92

Weight (kDa)

10.06

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	91 - 182	4.5e-09	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	482
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	3 cut(s)	109, 124, 188
AcoI	YGGCCR	2 cut(s)	132, 510
AcyI	GRCGYC	1 cut(s)	479
AfiI	CCNNNNNNNGG	3 cut(s)	115, 130, 495
AgsI	TTSAA	1 cut(s)	439
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	7 cut(s)	14, 35, 39, 56, 320, 334, 493
AluI	AGCT	7 cut(s)	14, 35, 39, 56, 320, 334, 493
Alw21I	GWGCWC	1 cut(s)	495
AoxI	GGCC	5 cut(s)	132, 228, 266, 343, 510
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	266, 343
AsuC2I	CCSGG	1 cut(s)	275
AsuNHI	GCTAGC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	512
BanII	GRGCYC	2 cut(s)	474, 495
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	2 cut(s)	147, 304
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	275
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	3 cut(s)	32, 36, 399
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	275, 347
BmgT120I	GGNCC	2 cut(s)	266, 343
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	2 cut(s)	275, 347
BmsI	GCATC	4 cut(s)	17, 179, 428, 475
BmtI	GCTAGC	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	273, 339, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 130, 495
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	273, 339, 391
BseGI	GGATG	2 cut(s)	170, 355
BseLI	CCNNNNNNNGG	3 cut(s)	115, 130, 495
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	4 cut(s)	258, 374, 426, 534
BseRI	GAGGAG	1 cut(s)	204
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	5 cut(s)	134, 230, 268, 345, 512
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	3 cut(s)	115, 130, 495
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	5 cut(s)	134, 230, 268, 345, 512
Bsp1286I	GDGCHC	2 cut(s)	474, 495
Bsp143I	GATC	2 cut(s)	68, 363
BspACI	CCGC	3 cut(s)	109, 124, 188
BspANI	GGCC	5 cut(s)	134, 230, 268, 345, 512
BspCNI	CTCAG	4 cut(s)	257, 373, 425, 535
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	107
BspOI	GCTAGC	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	306
BssECI	CCNNGG	3 cut(s)	273, 339, 391
BssMI	GATC	2 cut(s)	68, 363
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	2 cut(s)	339, 391
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	37, 232, 270
BstDEI	CTNAG	5 cut(s)	237, 244, 360, 412, 543
BstF5I	GGATG	2 cut(s)	170, 355
BstKTI	GATC	2 cut(s)	71, 366
BstMBI	GATC	2 cut(s)	68, 363
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	273, 345
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	5 cut(s)	134, 230, 268, 345, 512
BtsCI	GGATG	2 cut(s)	170, 355
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	5 cut(s)	78, 268, 333, 420, 540
Cac8I	GCNNGC	3 cut(s)	37, 232, 270
CciI	TCATGA	1 cut(s)	474
Cfr13I	GGNCC	2 cut(s)	266, 343
CviAII	CATG	4 cut(s)	19, 115, 475, 514
DdeI	CTNAG	5 cut(s)	237, 244, 360, 412, 543
DpnI	GATC	2 cut(s)	70, 365
DpnII	GATC	2 cut(s)	68, 363
EaeI	YGGCCR	2 cut(s)	132, 510
EagI	CGGCCG	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	493
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	339, 391
Eco24I	GRGCYC	2 cut(s)	474, 495
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	339, 391
EcoT38I	GRGCYC	2 cut(s)	474, 495
ErhI	CCWWGG	2 cut(s)	339, 391
FaeI	CATG	4 cut(s)	22, 118, 478, 517
FaiI	YATR	6 cut(s)	20, 51, 116, 476, 515, 549
FatI	CATG	4 cut(s)	18, 114, 474, 513
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	157, 362
FriOI	GRGCYC	2 cut(s)	474, 495
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	32, 36, 399
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	5 cut(s)	134, 230, 268, 345, 512
HapII	CCGG	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	4 cut(s)	22, 118, 478, 517
HinfI	GANTC	5 cut(s)	282, 427, 444, 455, 562
HpaII	CCGG	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	4 cut(s)	247, 363, 370, 484
Hpy188III	TCNNGA	2 cut(s)	475, 496
Hpy8I	GTNNAC	1 cut(s)	540
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	5 cut(s)	54, 133, 220, 498, 547
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	3 cut(s)	22, 257, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	5 cut(s)	237, 244, 360, 412, 543
HpySE526I	ACGT	1 cut(s)	479
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	4 cut(s)	22, 118, 478, 517
Kzo9I	GATC	2 cut(s)	68, 363
LmnI	GCTCC	4 cut(s)	53, 63, 142, 331
LpnPI	CCDG	9 cut(s)	42, 108, 177, 244, 282, 288, 332, 359, 481
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	4 cut(s)	17, 179, 428, 475
MaeI	CTAG	3 cut(s)	32, 36, 399
MaeII	ACGT	1 cut(s)	479
MalI	GATC	2 cut(s)	70, 365
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	2 cut(s)	68, 363
MboII	GAAGA	1 cut(s)	144
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	2 cut(s)	474, 495
MlsI	TGGCCA	1 cut(s)	512
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	3 cut(s)	453, 464, 556
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	6 cut(s)	160, 201, 222, 225, 441, 551
Mox20I	TGGCCA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	512
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	275, 347
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	275
NdeII	GATC	2 cut(s)	68, 363
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	4 cut(s)	22, 118, 478, 517
NlaIV	GGNNCC	1 cut(s)	107
NmeAIII	GCCGAG	2 cut(s)	160, 514
PagI	TCATGA	1 cut(s)	474
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	282, 427
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	452, 463, 556
PpsI	GAGTC	3 cut(s)	452, 463, 556
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	266, 343
PsuI	RGATCY	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	495
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	68, 363
Sau96I	GGNCC	2 cut(s)	266, 343
SchI	GAGTC	3 cut(s)	453, 464, 556
ScrFI	CCNGG	2 cut(s)	275, 347
SduI	GDGCHC	2 cut(s)	474, 495
SfaNI	GCATC	4 cut(s)	17, 179, 428, 475
SpeI	ACTAGT	1 cut(s)	398
SsiI	CCGC	3 cut(s)	109, 124, 188
SspMI	CTAG	3 cut(s)	32, 36, 399
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	273, 345
StyI	CCWWGG	2 cut(s)	339, 391
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	282, 427
TscAI	CASTG	5 cut(s)	78, 268, 333, 420, 547
TseI	GCWGC	1 cut(s)	5
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	5 cut(s)	78, 268, 333, 420, 547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520
XspI	CTAG	3 cut(s)	32, 36, 399
ZraI	GACGTC	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.