pycom17g22240

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000833
Physical Location & Seq
Reverse (-)
20666876 .. 20668560
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g22240.2

Sequence Viewer

Length: 1209 bp
ATGTCTTCTCTACAACAAACCTTCTCATCCAAATCCAGTTCGAACTTCAACGAGTTCCAATGGGTTATTCAAATCCGAAAAACACTCGGAGAAGAGCTCGACGATGATAGCGAAATCCCTGTTTCCGTTTTCAGTGTCCCAAAAACCCTTTTGGCCAGTGATCCTGATTCCTACACCCCACAAGAAGTTGCAGTTGGTCCTTACCATTATTTGCGTCCGGAGCTCTACGAGATGGAGAGGTACAAAGTGGCTGCAGCTAAAAGAACACAAAAGAATCTCCAGTGCCTTAAGTTCCAAAATCTTGTTGACCAATTGATAAACCTTGAGCCGCGGATTCGTGCTTGCTACCACAAGTACCTGGATTTCAATGGTGAGACTCTAGGGTGGATGATGGCGATTGATGCGTCGTTCTTGCTAGAGATGATCCAACTCTATGGAGCCGAAGAAGGGAAGATTTTGACAAGAGTTTCCTCAAAGATGTCACGCTTGGTTGACTATTCAGGCAGGAACTCAGCACACCATGCAATTCTAAGGGACTTGGTAATGCTCGAGAACCAAATCCCACTATTTGTGTTGAGAAAAATGTTGGAGTTTCGATTCCAATCGTTGGAAACCGCCGACGAGATGCTGCTTTCAATGTTGATGGGATTGTGCAAAGAGCTTTCACCATTCAAGATGAAGGATGAGGACCTACCAATCGATCACAGTCTCAGAATGTGCTCACTTGCTAGACTTTGTGTACCAAATGATCACCCCCAAACTAGAACGCCGAGGTCGATCCTGAGAAACTTGGTAGCTTATGAAGCATCAAATGCATCAGGGCAGTTGGTTTTTACGCGCTACACTGAAATGATGAACGGGATTATAGACACGGAGGAGGACGCAAAGCTGCTTAGAGAAAAAGGTATAATTCTGAACCGTTTGAAGAGTGATGAAGAAGTGGCCAATCTGTTTAATGGTATGAGCAAGTCGATTCGGTTGACGAAAGTGCCATTCTTGGACCAGGCGATTGAAGATTTGAACAAGTATTACAACGGTAGATGGAAGGTTAAAATGGCAAAATTTTTCAAGGTTTATGTGGTTGGTTGCTGGCCAATTCTTGCTTTGCTGGCTGCCGTTTTTCTCTTGCTATTGATGGCATTGCAAGCGTTTTGCTCAGTTTATAGCTGCGGTCGCATATTTCACATCAACACTACCACTACTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

403

Amino Acids

46.19

Weight (kDa)

7.04

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 607
AccII CGCG 2 cut(s) 331, 838
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 4 cut(s) 329, 331, 615, 1170
AclWI GGATC 3 cut(s) 155, 418, 772
AcoI YGGCCR 3 cut(s) 153, 942, 1091
AcsI RAATTY 1 cut(s) 1061
AfaI GTAC 3 cut(s) 242, 356, 741
AfiI CCNNNNNNNGG 2 cut(s) 447, 607
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 9 cut(s) 49, 71, 367, 636, 673, 925, 1013, 1021, 1069
AjnI CCWGG 2 cut(s) 357, 1002
AjuI GAANNNNNNNTTGG 4 cut(s) 51, 83, 177, 209
AluBI AGCT 7 cut(s) 97, 223, 257, 661, 797, 889, 1167
AluI AGCT 7 cut(s) 97, 223, 257, 661, 797, 889, 1167
Alw21I GWGCWC 3 cut(s) 99, 225, 722
Alw26I GTCTC 2 cut(s) 368, 713
AlwI GGATC 3 cut(s) 155, 418, 772
Ama87I CYCGRG 1 cut(s) 548
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 3 cut(s) 153, 942, 1091
ApeKI GCWGC 6 cut(s) 251, 254, 628, 889, 1112, 1167
ApoI RAATTY 1 cut(s) 1061
AspLEI GCGC 1 cut(s) 840
AspS9I GGNCC 3 cut(s) 197, 688, 1000
AsuHPI GGTGA 3 cut(s) 383, 657, 743
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 3 cut(s) 197, 688, 1000
BalI TGGCCA 3 cut(s) 155, 944, 1093
BanII GRGCYC 2 cut(s) 99, 225
Bbv12I GWGCWC 3 cut(s) 99, 225, 722
BbvI GCAGC 6 cut(s) 238, 266, 615, 876, 1099, 1154
BccI CCATC 5 cut(s) 226, 385, 637, 1035, 1129
BceAI ACGGC 1 cut(s) 1100
BciT130I CCWGG 2 cut(s) 359, 1004
BclI TGATCA 1 cut(s) 748
BcoDI GTCTC 2 cut(s) 368, 713
BfaI CTAG 4 cut(s) 380, 416, 729, 762
BfmI CTRYAG 1 cut(s) 252
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 7 cut(s) 252, 255, 329, 629, 890, 1113, 1168
BlsI GCNGC 7 cut(s) 253, 256, 330, 630, 891, 1114, 1169
Bme1390I CCNGG 2 cut(s) 359, 1004
Bme18I GGWCC 3 cut(s) 197, 688, 1000
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 3 cut(s) 197, 688, 1000
BmiI GGNNCC 1 cut(s) 439
BmrFI CCNGG 2 cut(s) 359, 1004
BmsI GCATC 4 cut(s) 391, 615, 815, 824
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BpmI CTGGAG 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 699
BsaBI GATNNNNATC 1 cut(s) 601
BsaJI CCNNGG 2 cut(s) 329, 770
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 607
Bse1I ACTGG 3 cut(s) 36, 156, 280
Bse3DI GCAATG 1 cut(s) 1139
Bse8I GATNNNNATC 1 cut(s) 601
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 2 cut(s) 359, 1004
BseCI ATCGAT 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 329, 770
BseGI GGATG 3 cut(s) 26, 393, 688
BseJI GATNNNNATC 1 cut(s) 601
BseLI CCNNNNNNNGG 2 cut(s) 447, 607
BseMI GCAATG 1 cut(s) 1139
BseMII CTCAG 4 cut(s) 525, 724, 773, 1170
BseNI ACTGG 3 cut(s) 36, 156, 280
BseRI GAGGAG 1 cut(s) 890
BseXI GCAGC 6 cut(s) 238, 266, 615, 876, 1099, 1154
Bsh1236I CGCG 2 cut(s) 331, 838
Bsh1285I CGRYCG 1 cut(s) 1174
BshFI GGCC 3 cut(s) 155, 944, 1093
BshVI ATCGAT 1 cut(s) 699
BsiEI CGRYCG 1 cut(s) 1174
BsiHKAI GWGCWC 3 cut(s) 99, 225, 722
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 2 cut(s) 122, 548
BslI CCNNNNNNNGG 2 cut(s) 447, 607
BsmAI GTCTC 2 cut(s) 368, 713
BsmFI GGGAC 2 cut(s) 122, 548
BsnI GGCC 3 cut(s) 155, 944, 1093
BsoBI CYCGRG 1 cut(s) 548
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 3 cut(s) 99, 225, 722
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 5 cut(s) 160, 423, 700, 748, 777
BspACI CCGC 4 cut(s) 329, 331, 615, 1170
BspANI GGCC 3 cut(s) 155, 944, 1093
BspCNI CTCAG 4 cut(s) 524, 723, 774, 1169
BspDI ATCGAT 1 cut(s) 699
BspEI TCCGGA 1 cut(s) 217
BspFNI CGCG 2 cut(s) 331, 838
BspLI GGNNCC 1 cut(s) 439
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 3 cut(s) 155, 418, 772
BspQI GCTCTTC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 1139
BsrI ACTGG 3 cut(s) 36, 156, 280
BssECI CCNNGG 2 cut(s) 329, 770
BssMI GATC 5 cut(s) 160, 423, 700, 748, 777
Bst2UI CCWGG 2 cut(s) 359, 1004
Bst4CI ACNGT 3 cut(s) 707, 920, 1037
Bst6I CTCTTC 2 cut(s) 87, 920
BstAFI CTTAAG 1 cut(s) 287
BstAPI GCANNNNNTGC 2 cut(s) 521, 812
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 4 cut(s) 343, 1091, 1110, 1146
BstDEI CTNAG 7 cut(s) 511, 530, 710, 782, 893, 1156, 1206
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 3 cut(s) 26, 393, 688
BstFNI CGCG 2 cut(s) 331, 838
BstHHI GCGC 1 cut(s) 840
BstKTI GATC 5 cut(s) 163, 426, 703, 751, 780
BstMAI GTCTC 2 cut(s) 368, 713
BstMBI GATC 5 cut(s) 160, 423, 700, 748, 777
BstMCI CGRYCG 1 cut(s) 1174
BstMWI GCNNNNNNNGC 8 cut(s) 220, 401, 521, 803, 812, 1109, 1145, 1173
BstNI CCWGG 2 cut(s) 359, 1004
BstSCI CCNGG 2 cut(s) 357, 1002
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 2 cut(s) 331, 838
BstV1I GCAGC 6 cut(s) 238, 266, 615, 876, 1099, 1154
BstXI CCANNNNNNTGG 1 cut(s) 434
Bsu15I ATCGAT 1 cut(s) 699
BsuRI GGCC 3 cut(s) 155, 944, 1093
BsuTUI ATCGAT 1 cut(s) 699
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 3 cut(s) 26, 393, 688
BtsIMutI CAGTG 4 cut(s) 139, 163, 287, 843
Cac8I GCNNGC 4 cut(s) 343, 1091, 1110, 1146
CfoI GCGC 1 cut(s) 840
Cfr13I GGNCC 3 cut(s) 197, 688, 1000
Cfr42I CCGCGG 1 cut(s) 332
ClaI ATCGAT 1 cut(s) 699
CseI GACGC 3 cut(s) 203, 393, 890
Csp6I GTAC 3 cut(s) 241, 355, 740
CviAII CATG 1 cut(s) 521
CviQI GTAC 3 cut(s) 241, 355, 740
DdeI CTNAG 7 cut(s) 511, 530, 710, 782, 893, 1156, 1206
DpnI GATC 5 cut(s) 162, 425, 702, 750, 779
DpnII GATC 5 cut(s) 160, 423, 700, 748, 777
EaeI YGGCCR 3 cut(s) 153, 942, 1091
Eam1104I CTCTTC 2 cut(s) 87, 920
EarI CTCTTC 2 cut(s) 87, 920
Ecl136II GAGCTC 2 cut(s) 97, 223
Eco24I GRGCYC 2 cut(s) 99, 225
Eco47I GGWCC 3 cut(s) 197, 688, 1000
Eco53kI GAGCTC 2 cut(s) 97, 223
Eco88I CYCGRG 1 cut(s) 548
EcoICRI GAGCTC 2 cut(s) 97, 223
EcoO109I RGGNCCY 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 357, 1002
EcoT22I ATGCAT 1 cut(s) 817
EcoT38I GRGCYC 2 cut(s) 99, 225
FaeI CATG 1 cut(s) 524
FaiI YATR 9 cut(s) 435, 522, 801, 866, 908, 962, 1077, 1164, 1178
FaqI GGGAC 2 cut(s) 122, 548
FatI CATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 7 cut(s) 252, 255, 329, 629, 890, 1113, 1168
FokI GGATG 3 cut(s) 13, 400, 695
FriOI GRGCYC 2 cut(s) 99, 225
Fsp4HI GCNGC 7 cut(s) 252, 255, 329, 629, 890, 1113, 1168
FspBI CTAG 4 cut(s) 380, 416, 729, 762
GlaI GCGC 1 cut(s) 839
GluI GCNGC 7 cut(s) 252, 255, 329, 629, 890, 1113, 1168
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 3 cut(s) 155, 944, 1093
HapII CCGG 1 cut(s) 218
HgaI GACGC 3 cut(s) 203, 393, 890
HhaI GCGC 1 cut(s) 840
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 1 cut(s) 838
HinP1I GCGC 1 cut(s) 838
HincII GTYRAC 3 cut(s) 307, 493, 981
HindII GTYRAC 3 cut(s) 307, 493, 981
HinfI GANTC 6 cut(s) 167, 274, 334, 376, 597, 973
HpaII CCGG 1 cut(s) 218
HphI GGTGA 3 cut(s) 383, 657, 743
Hpy166II GTNNAC 4 cut(s) 307, 493, 740, 981
Hpy188I TCNGA 4 cut(s) 77, 89, 713, 915
Hpy188III TCNNGA 5 cut(s) 164, 218, 550, 673, 781
Hpy8I GTNNAC 4 cut(s) 307, 493, 740, 981
Hpy99I CGWCG 3 cut(s) 104, 409, 623
HpyAV CCTTC 4 cut(s) 31, 440, 673, 1039
HpyCH4III ACNGT 3 cut(s) 707, 920, 1037
HpyCH4V TGCA 6 cut(s) 191, 254, 524, 654, 815, 1144
HpyF10VI GCNNNNNNNGC 8 cut(s) 220, 401, 521, 803, 812, 1109, 1145, 1173
HpyF3I CTNAG 7 cut(s) 511, 530, 710, 782, 893, 1156, 1206
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 1 cut(s) 838
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 748
KspI CCGCGG 1 cut(s) 332
Kzo9I GATC 5 cut(s) 160, 423, 700, 748, 777
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 2 cut(s) 220, 437
Lsp1109I GCAGC 6 cut(s) 238, 266, 615, 876, 1099, 1154
LweI GCATC 4 cut(s) 391, 615, 815, 824
MaeI CTAG 4 cut(s) 380, 416, 729, 762
MaeIII GTNAC 1 cut(s) 480
MalI GATC 5 cut(s) 162, 425, 702, 750, 779
MboI GATC 5 cut(s) 160, 423, 700, 748, 777
MboII GAAGA 6 cut(s) 104, 455, 463, 937, 947, 1025
MfeI CAATTG 1 cut(s) 311
MhlI GDGCHC 3 cut(s) 99, 225, 722
MlsI TGGCCA 3 cut(s) 155, 944, 1093
MluCI AATT 5 cut(s) 311, 525, 909, 1061, 1095
MluNI TGGCCA 3 cut(s) 155, 944, 1093
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 3 cut(s) 451, 567, 588
MnlI CCTC 6 cut(s) 231, 481, 679, 765, 868, 871
Mox20I TGGCCA 3 cut(s) 155, 944, 1093
Mph1103I ATGCAT 1 cut(s) 817
MroI TCCGGA 1 cut(s) 217
MscI TGGCCA 3 cut(s) 155, 944, 1093
MseI TTAA 3 cut(s) 288, 954, 1050
MslI CAYNNNNRTG 1 cut(s) 848
Msp20I TGGCCA 3 cut(s) 155, 944, 1093
MspA1I CMGCKG 1 cut(s) 331
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 359, 1004
MunI CAATTG 1 cut(s) 311
MvaI CCWGG 2 cut(s) 359, 1004
MvnI CGCG 2 cut(s) 331, 838
MwoI GCNNNNNNNGC 8 cut(s) 220, 401, 521, 803, 812, 1109, 1145, 1173
NdeII GATC 5 cut(s) 160, 423, 700, 748, 777
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 1 cut(s) 439
NmeAIII GCCGAG 1 cut(s) 795
NmuCI GTSAC 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 817
NspV TTCGAA 1 cut(s) 41
PaeR7I CTCGAG 1 cut(s) 548
PciSI GCTCTTC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 773
PfeI GAWTC 5 cut(s) 167, 274, 334, 597, 973
PflMI CCANNNNNTGG 1 cut(s) 607
PkrI GCNGC 7 cut(s) 253, 256, 330, 630, 891, 1114, 1169
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PpuMI RGGWCCY 1 cut(s) 688
Psp124BI GAGCTC 2 cut(s) 99, 225
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 2 cut(s) 357, 1002
PspGI CCWGG 2 cut(s) 357, 1002
PspN4I GGNNCC 1 cut(s) 439
PspPI GGNCC 3 cut(s) 197, 688, 1000
PspPPI RGGWCCY 1 cut(s) 688
PsrI GAACNNNNNNTAC 2 cut(s) 1013, 1045
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 3 cut(s) 242, 356, 741
RsaNI GTAC 3 cut(s) 241, 355, 740
RseI CAYNNNNRTG 1 cut(s) 848
SacI GAGCTC 2 cut(s) 99, 225
SacII CCGCGG 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 3 cut(s) 288, 954, 1050
SatI GCNGC 7 cut(s) 252, 255, 329, 629, 890, 1113, 1168
Sau3AI GATC 5 cut(s) 160, 423, 700, 748, 777
Sau96I GGNCC 3 cut(s) 197, 688, 1000
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 359, 1004
SduI GDGCHC 3 cut(s) 99, 225, 722
SfaNI GCATC 4 cut(s) 391, 615, 815, 824
SfcI CTRYAG 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 548
Sfr303I CCGCGG 1 cut(s) 332
SfuI TTCGAA 1 cut(s) 41
SgrBI CCGCGG 1 cut(s) 332
SinI GGWCC 3 cut(s) 197, 688, 1000
SlaI CTCGAG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 848
SmlI CTYRAG 3 cut(s) 287, 323, 548
SmoI CTYRAG 3 cut(s) 287, 323, 548
Sse9I AATT 5 cut(s) 311, 525, 909, 1061, 1095
SsiI CCGC 4 cut(s) 329, 331, 615, 1170
SspMI CTAG 4 cut(s) 380, 416, 729, 762
SstI GAGCTC 2 cut(s) 99, 225
StyD4I CCNGG 2 cut(s) 357, 1002
TaaI ACNGT 3 cut(s) 707, 920, 1037
TaqI TCGA 7 cut(s) 41, 99, 549, 595, 699, 776, 971
TasI AATT 5 cut(s) 311, 525, 909, 1061, 1095
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 5 cut(s) 167, 274, 334, 597, 973
Tru1I TTAA 3 cut(s) 288, 954, 1050
Tru9I TTAA 3 cut(s) 288, 954, 1050
TscAI CASTG 4 cut(s) 139, 163, 287, 850
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 6 cut(s) 251, 254, 628, 889, 1112, 1167
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 4 cut(s) 692, 816, 869, 948
TspGWI ACGGA 2 cut(s) 115, 887
TspRI CASTG 4 cut(s) 139, 163, 287, 850
Van91I CCANNNNNTGG 1 cut(s) 607
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 3 cut(s) 197, 688, 1000
XapI RAATTY 1 cut(s) 1061
XhoI CTCGAG 1 cut(s) 548
XspI CTAG 4 cut(s) 380, 416, 729, 762
Zsp2I ATGCAT 1 cut(s) 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.