RchiOBHm_Chr5g0046381

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000833
Physical Location & Seq
Forward (+)
42415821 .. 42417093
1273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32437

Sequence Viewer

Length: 975 bp
ATGATGGCCATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGAGGTCCAAGAAGGCCCAAGAGTTTCTTCAAGGATGGCGCATTTGGTTGACCATGCAGGAAGGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATCCCTCGATTTGTTTTGAAAAAAGTGTTGAAGTTTAAGCTCCCAGCATTGGAATGTGCCAAAGATAAGCTTCTTTCCATGTTTATGGGATTGTGCAAAGAGCTCTCCCCATTCAAGATGAATGACGAAGACATGCCAAATATGGGAGTGAATATCCAATTCTCGACAGTCAAACCCGAAGATGACAGTTCGAGCAATGGCATTAGCAAACCGCCGAAGATAGAGGAGATCACCATCCCATCAGTCTCCGATCTCTCAAAATCTTGTGTCAAGTTCTTGGCCGGCGGAATTAGAATTTCAGACATCTCTTTCAATACTGAAACTGGCTCATTTACCCTCCCGATTACTAGCTTAGATGGGAACACAGGGGTGATCCTGAGAAACTTGGTGGCCTATGAAGCATCAAGTGTATCGGGGCCATTGGTTTTCACTCGCTACACCGAGTTAATGAACAGGATCATAGACACCGAGGAGGATGTCAAGTTGCTTAGAGAGAAGCGTATCATCGTGAACCATTTGAAGAGTGATGAAGAAGTGGCAAATCTGTTCAATGGCATGAGCAAGTCCATTAGATTAACCAAAGTGCCCTCCTTGGATAAGGTAATCGCAGATGCCAACGGGTATTACAATGGTAGATGGAAAGTGAAGATGAGGAAGTTTTTGAACACTTTTGTGTATGGTTCCAAGCCGTTACTGGCTTTCCTCGCTGCCATTTTGCTCCTGCTCTTGATGACATTGCAAGCAGTCTGCTCAGTCTATAGGTGCAGTAGCATATTTCTTAGGCATATCAACACCACAGTCACCATTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

324

Amino Acids

36.29

Weight (kDa)

8.96

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 297 3.3e-65 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 374, 447
AclWI GGATC 2 cut(s) 529, 626
AcoI YGGCCR 2 cut(s) 6, 441
AcsI RAATTY 1 cut(s) 456
AfiI CCNNNNNNNGG 2 cut(s) 211, 305
AgsI TTSAA 8 cut(s) 78, 181, 193, 277, 475, 682, 712, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AleI CACNNNNGTG 2 cut(s) 530, 833
AluBI AGCT 4 cut(s) 202, 232, 265, 513
AluI AGCT 4 cut(s) 202, 232, 265, 513
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 2 cut(s) 529, 626
AoxI GGCC 5 cut(s) 6, 61, 441, 552, 578
ApeKI GCWGC 1 cut(s) 869
ApoI RAATTY 1 cut(s) 456
AspLEI GCGC 2 cut(s) 88, 121
AspS9I GGNCC 3 cut(s) 52, 62, 578
AsuHPI GGTGA 4 cut(s) 157, 385, 544, 955
AvaII GGWCC 1 cut(s) 52
AxyI CCTNAGG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 750
BalI TGGCCA 1 cut(s) 8
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 856
BccI CCATC 5 cut(s) 76, 404, 409, 512, 792
BceAI ACGGC 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 1 cut(s) 919
BisI GCNGC 1 cut(s) 870
BlsI GCNGC 1 cut(s) 871
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 52, 62, 578
BmiI GGNNCC 2 cut(s) 579, 844
BmsI GCATC 5 cut(s) 4, 130, 138, 572, 763
BpiI GAAGAC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 630, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 305
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 490, 861
Bse21I CCTNAGG 1 cut(s) 134
Bse3DI GCAATG 2 cut(s) 364, 896
Bse8I GATNNNNATC 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 630, 753
BseGI GGATG 3 cut(s) 87, 396, 643
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 2 cut(s) 211, 305
BseMI GCAATG 2 cut(s) 364, 896
BseMII CTCAG 2 cut(s) 530, 927
BseNI ACTGG 2 cut(s) 490, 861
BseRI GAGGAG 2 cut(s) 401, 647
BseSI GKGCMC 1 cut(s) 750
BseXI GCAGC 1 cut(s) 856
BseYI CCCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 946
BshFI GGCC 5 cut(s) 8, 63, 443, 554, 580
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 211, 305
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 5 cut(s) 8, 63, 443, 554, 580
Bsp1286I GDGCHC 2 cut(s) 267, 750
Bsp143I GATC 4 cut(s) 390, 412, 534, 618
BspACI CCGC 2 cut(s) 374, 447
BspANI GGCC 5 cut(s) 8, 63, 443, 554, 580
BspCNI CTCAG 2 cut(s) 531, 926
BspLI GGNNCC 2 cut(s) 579, 844
BspPI GGATC 2 cut(s) 529, 626
BsrDI GCAATG 2 cut(s) 364, 896
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 2 cut(s) 490, 861
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 2 cut(s) 630, 753
BssMI GATC 4 cut(s) 390, 412, 534, 618
BssT1I CCWWGG 1 cut(s) 753
Bst4CI ACNGT 3 cut(s) 331, 350, 961
Bst6I CTCTTC 1 cut(s) 677
BstC8I GCNNGC 2 cut(s) 445, 903
BstDEI CTNAG 7 cut(s) 134, 514, 539, 650, 913, 941, 972
BstF5I GGATG 3 cut(s) 87, 396, 643
BstHHI GCGC 2 cut(s) 88, 121
BstKTI GATC 4 cut(s) 393, 415, 537, 621
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 4 cut(s) 390, 412, 534, 618
BstMWI GCNNNNNNNGC 4 cut(s) 14, 125, 560, 866
BstNSI RCATGY 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 919
BstSLI GKGCMC 1 cut(s) 750
BstV1I GCAGC 1 cut(s) 856
BstV2I GAAGAC 1 cut(s) 297
BstXI CCANNNNNNTGG 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 134
BsuRI GGCC 5 cut(s) 8, 63, 443, 554, 580
BtsCI GGATG 3 cut(s) 87, 396, 643
Cac8I GCNNGC 2 cut(s) 445, 903
CfoI GCGC 2 cut(s) 88, 121
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 3 cut(s) 52, 62, 578
CviAII CATG 5 cut(s) 101, 125, 241, 295, 718
DdeI CTNAG 7 cut(s) 134, 514, 539, 650, 913, 941, 972
DpnI GATC 4 cut(s) 392, 414, 536, 620
DpnII GATC 4 cut(s) 390, 412, 534, 618
EaeI YGGCCR 2 cut(s) 6, 441
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
EciI GGCGGA 1 cut(s) 462
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 753
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 265
Eco81I CCTNAGG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 753
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 753
FaeI CATG 5 cut(s) 104, 128, 244, 298, 721
FalI AAGNNNNNCTT 4 cut(s) 58, 90, 216, 248
FaqI GGGAC 1 cut(s) 152
FatI CATG 5 cut(s) 100, 124, 240, 294, 717
Fnu4HI GCNGC 1 cut(s) 870
FokI GGATG 3 cut(s) 94, 383, 650
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 870
FspBI CTAG 1 cut(s) 510
GlaI GCGC 2 cut(s) 87, 120
GluI GCNGC 1 cut(s) 870
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 5 cut(s) 8, 63, 443, 554, 580
HapII CCGG 1 cut(s) 444
HhaI GCGC 2 cut(s) 88, 121
Hin1II CATG 5 cut(s) 104, 128, 244, 298, 721
Hin6I GCGC 2 cut(s) 86, 119
HinP1I GCGC 2 cut(s) 86, 119
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 230
HpaII CCGG 1 cut(s) 444
HphI GGTGA 4 cut(s) 157, 385, 544, 955
Hpy166II GTNNAC 2 cut(s) 97, 673
Hpy188I TCNGA 2 cut(s) 412, 463
Hpy188III TCNNGA 6 cut(s) 277, 325, 502, 538, 670, 889
Hpy8I GTNNAC 2 cut(s) 97, 673
HpyAV CCTTC 2 cut(s) 53, 102
HpyCH4III ACNGT 3 cut(s) 331, 350, 961
HpyCH4V TGCA 5 cut(s) 104, 128, 258, 901, 927
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 125, 560, 866
HpyF3I CTNAG 7 cut(s) 134, 514, 539, 650, 913, 941, 972
Hsp92II CATG 5 cut(s) 104, 128, 244, 298, 721
HspAI GCGC 2 cut(s) 86, 119
KroI GCCGGC 1 cut(s) 443
KroNI GCCGGC 1 cut(s) 445
Kzo9I GATC 4 cut(s) 390, 412, 534, 618
LmnI GCTCC 2 cut(s) 207, 885
LpnPI CCDG 9 cut(s) 90, 219, 457, 471, 513, 551, 601, 842, 896
Lsp1109I GCAGC 1 cut(s) 856
LweI GCATC 5 cut(s) 4, 130, 138, 572, 763
MaeI CTAG 1 cut(s) 510
MaeIII GTNAC 2 cut(s) 852, 961
MalI GATC 4 cut(s) 392, 414, 536, 620
MboI GATC 4 cut(s) 390, 412, 534, 618
MboII GAAGA 7 cut(s) 66, 302, 353, 391, 694, 704, 820
MhlI GDGCHC 2 cut(s) 267, 750
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 3 cut(s) 320, 450, 456
MluNI TGGCCA 1 cut(s) 8
Mox20I TGGCCA 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 443
MscI TGGCCA 1 cut(s) 8
MseI TTAA 3 cut(s) 198, 608, 737
MslI CAYNNNNRTG 4 cut(s) 214, 245, 530, 833
Msp20I TGGCCA 1 cut(s) 8
MspI CCGG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 14, 125, 560, 866
NaeI GCCGGC 1 cut(s) 445
NdeII GATC 4 cut(s) 390, 412, 534, 618
NgoMIV GCCGGC 1 cut(s) 443
NlaIII CATG 5 cut(s) 104, 128, 244, 298, 721
NlaIV GGNNCC 2 cut(s) 579, 844
NmuCI GTSAC 1 cut(s) 961
NspI RCATGY 1 cut(s) 298
OliI CACNNNNGTG 2 cut(s) 530, 833
PdiI GCCGGC 1 cut(s) 445
PkrI GCNGC 1 cut(s) 871
Psp124BI GAGCTC 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 579, 844
PspPI GGNCC 3 cut(s) 52, 62, 578
RseI CAYNNNNRTG 4 cut(s) 214, 245, 530, 833
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 3 cut(s) 198, 608, 737
SatI GCNGC 1 cut(s) 870
Sau3AI GATC 4 cut(s) 390, 412, 534, 618
Sau96I GGNCC 3 cut(s) 52, 62, 578
SduI GDGCHC 2 cut(s) 267, 750
SetI ASST 7 cut(s) 54, 204, 234, 267, 515, 765, 926
SfaNI GCATC 5 cut(s) 4, 130, 138, 572, 763
SfcI CTRYAG 1 cut(s) 919
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 4 cut(s) 214, 245, 530, 833
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 3 cut(s) 320, 450, 456
SsiI CCGC 2 cut(s) 374, 447
SspMI CTAG 1 cut(s) 510
SstI GAGCTC 1 cut(s) 267
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 3 cut(s) 331, 350, 961
TaqI TCGA 4 cut(s) 30, 169, 326, 353
TasI AATT 3 cut(s) 320, 450, 456
Tru1I TTAA 3 cut(s) 198, 608, 737
Tru9I TTAA 3 cut(s) 198, 608, 737
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 1 cut(s) 869
Tsp45I GTSAC 1 cut(s) 961
TspDTI ATGAA 4 cut(s) 296, 573, 626, 705
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 456
XceI RCATGY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.