Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Forward (+)

42342871 .. 42343047

Gene Structure 177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGAAAGTGAAGATGAGGAGTTTTTGAACACTTTTGTGTATGGTTCCAAGCCGTTACTGGCTTTCCTCGCTGCCATTTTGCTCCTGCTCTTGATGACATTGCAAGCAGTCTGCTCAGTCTATAGGTGCAGTAGCATATTTCTTAGGCATATCAACACCACAGTCACCATTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

58

Amino Acids

6.54

Weight (kDa)

4.96

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	28
AleI	CACNNNNGTG	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	115, 143, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	105
CviJI	RGCY	2 cut(s)	52, 62
CviKI_1	RGCY	2 cut(s)	52, 62
DdeI	CTNAG	3 cut(s)	115, 143, 174
FaiI	YATR	4 cut(s)	42, 123, 137, 150
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HphI	GGTGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	103, 129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	115, 143, 174
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	2 cut(s)	44, 98
Lsp1109I	GCAGC	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	54, 163
MboII	GAAGA	1 cut(s)	23
MnlI	CCTC	2 cut(s)	10, 77
MslI	CAYNNNNRTG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	163
OliI	CACNNNNGTG	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	35
SatI	GCNGC	1 cut(s)	72
SetI	ASST	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	121
SgeI	CNNG	6 cut(s)	61, 71, 80, 97, 103, 116
SmiMI	CAYNNNNRTG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.