Rmu_co8204744.1_g000001

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8204744.1
OG0000833
Physical Location & Seq
Forward (+)
1 .. 450
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8204744.1_g000001.1.cds

Sequence Viewer

Length: 364 bp
caatgctgaaactggctcatttaccctcccgattactagcttagatgggaacacaggagtgatcctgagaaacttggtggcctatgaagcatcaagtgtatcggggccattggttttcactcgctacaccgagttaatgaacgggatcatagacaccgaggaggatgtcaagttgcttagagagaagcgtatcatcgtgaaccatttgaagagtgatgaagaagtggcaaatctgttcaatggcatgagcaagtccattagattgaccaaagtgccctccttggataaggccgttactggctttcctcgctgccattttgctcctgctcttgatgacattgcaagcagtctgctcagtctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

120

Amino Acids

13.08

Weight (kDa)

5.31

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 56, 153
AgsI TTSAA 2 cut(s) 209, 239
AleI CACNNNNGTG 1 cut(s) 57
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 2 cut(s) 56, 153
AoxI GGCC 3 cut(s) 79, 105, 289
ApeKI GCWGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 105
BaeGI GKGCMC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 297
BccI CCATC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 276
BfaI CTAG 1 cut(s) 37
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 157, 280
Bse1I ACTGG 2 cut(s) 17, 302
Bse3DI GCAATG 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 157, 280
BseGI GGATG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 17, 302
BseRI GAGGAG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 1 cut(s) 297
BshFI GGCC 3 cut(s) 81, 107, 291
BsnI GGCC 3 cut(s) 81, 107, 291
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 61, 145
BspANI GGCC 3 cut(s) 81, 107, 291
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 2 cut(s) 56, 153
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 2 cut(s) 17, 302
BssECI CCNNGG 2 cut(s) 157, 280
BssMI GATC 2 cut(s) 61, 145
BssT1I CCWWGG 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 4 cut(s) 41, 66, 177, 354
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 2 cut(s) 64, 148
BstMBI GATC 2 cut(s) 61, 145
BstMWI GCNNNNNNNGC 2 cut(s) 87, 307
BstSFI CTRYAG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 81, 107, 291
BtsCI GGATG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 105
CviAII CATG 1 cut(s) 245
CviJI RGCY 6 cut(s) 16, 40, 81, 107, 291, 301
CviKI_1 RGCY 6 cut(s) 16, 40, 81, 107, 291, 301
DdeI CTNAG 4 cut(s) 41, 66, 177, 354
DpnI GATC 2 cut(s) 63, 147
DpnII GATC 2 cut(s) 61, 145
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 1 cut(s) 248
FaiI YATR 4 cut(s) 85, 150, 246, 362
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 1 cut(s) 37
GluI GCNGC 1 cut(s) 311
HaeIII GGCC 3 cut(s) 81, 107, 291
Hin1II CATG 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 200
Hpy188III TCNNGA 4 cut(s) 29, 65, 197, 330
Hpy8I GTNNAC 1 cut(s) 200
HpyCH4V TGCA 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 307
HpyF3I CTNAG 4 cut(s) 41, 66, 177, 354
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 2 cut(s) 61, 145
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 4 cut(s) 40, 78, 283, 337
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 1 cut(s) 99
MaeI CTAG 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 293
MalI GATC 2 cut(s) 63, 147
MboI GATC 2 cut(s) 61, 145
MboII GAAGA 2 cut(s) 221, 231
MhlI GDGCHC 1 cut(s) 277
MnlI CCTC 5 cut(s) 36, 152, 155, 287, 316
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 87, 307
NdeII GATC 2 cut(s) 61, 145
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 106
OliI CACNNNNGTG 1 cut(s) 57
PkrI GCNGC 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 2 cut(s) 61, 145
Sau96I GGNCC 1 cut(s) 105
SduI GDGCHC 1 cut(s) 277
SetI ASST 1 cut(s) 42
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 57
SspMI CTAG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 280
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 100, 153, 232
XspI CTAG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.