Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Forward (+)

42242049 .. 42242423

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG317000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCCATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGAGGTCCAAGAAGGCCCAAGAGTTTCTTCAAGGATGGCGCATTTGGTTGACCATGCAGGAAGGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATCCCTCGATTTGTTTTGAAAAAAGTGTTGAAGTTTAAGCTCCCAGCATTGGAATGTGCCAAAGATAAGCTTCTTTCCATGTTTATGGGATTGTGCAAAGAGCTCTCCCCATTCAAGATGAATGACGAAGACATGCCAAATATGGGAGTGAATATCCAATTCTCGAGTTGTTTTCACTTGCTGGACTTCTTGTACCGCCTGATCACCCCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

124

Amino Acids

14.28

Weight (kDa)

7.77

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	1 - 123	8.3e-18	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	208, 302
AgsI	TTSAA	4 cut(s)	75, 178, 190, 274
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	3 cut(s)	199, 229, 262
AluI	AGCT	3 cut(s)	199, 229, 262
Alw21I	GWGCWC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	2 cut(s)	3, 58
AspLEI	GCGC	2 cut(s)	85, 118
AspS9I	GGNCC	2 cut(s)	49, 59
AsuHPI	GGTGA	2 cut(s)	154, 355
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	264
BccI	CCATC	1 cut(s)	73
BclI	TGATCA	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	49, 59
BmsI	GCATC	2 cut(s)	127, 135
BpiI	GAAGAC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 302
Bse21I	CCTNAGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	208, 302
BseYI	CCCAGC	1 cut(s)	202
BshFI	GGCC	2 cut(s)	5, 60
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	208, 302
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	5, 60
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	5, 60
BssMI	GATC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	85, 118
BstKTI	GATC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 122
BstNSI	RCATGY	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	294
BstXI	CCANNNNNNTGG	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	5, 60
BtsCI	GGATG	1 cut(s)	84
CfoI	GCGC	2 cut(s)	85, 118
Cfr13I	GGNCC	2 cut(s)	49, 59
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	4 cut(s)	98, 122, 238, 292
CviJI	RGCY	5 cut(s)	5, 60, 199, 229, 262
CviKI_1	RGCY	5 cut(s)	5, 60, 199, 229, 262
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	4 cut(s)	101, 125, 241, 295
FaiI	YATR	7 cut(s)	45, 99, 123, 239, 245, 293, 302
FalI	AAGNNNNNCTT	4 cut(s)	55, 87, 213, 245
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	4 cut(s)	97, 121, 237, 291
FbaI	TGATCA	1 cut(s)	360
FokI	GGATG	1 cut(s)	91
FriOI	GRGCYC	1 cut(s)	264
GlaI	GCGC	2 cut(s)	84, 117
GsaI	CCCAGC	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	5, 60
HhaI	GCGC	2 cut(s)	85, 118
Hin1II	CATG	4 cut(s)	101, 125, 241, 295
Hin6I	GCGC	2 cut(s)	83, 116
HinP1I	GCGC	2 cut(s)	83, 116
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	227
HphI	GGTGA	2 cut(s)	154, 355
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	274, 322
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	50, 99
HpyCH4V	TGCA	3 cut(s)	101, 125, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 122
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	4 cut(s)	101, 125, 241, 295
HspAI	GCGC	2 cut(s)	83, 116
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	4 cut(s)	87, 216, 326, 371
LweI	GCATC	2 cut(s)	127, 135
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	2 cut(s)	63, 299
MhlI	GDGCHC	1 cut(s)	264
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	317, 370
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	35, 40, 44, 174
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	2 cut(s)	211, 242
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	11, 122
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	4 cut(s)	101, 125, 241, 295
NspI	RCATGY	1 cut(s)	295
PaeR7I	CTCGAG	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	49, 59
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	211, 242
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	2 cut(s)	49, 59
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	4 cut(s)	51, 201, 231, 264
SfaNI	GCATC	2 cut(s)	127, 135
Sfr274I	CTCGAG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	211, 242
SmlI	CTYRAG	2 cut(s)	149, 322
SmoI	CTYRAG	2 cut(s)	149, 322
Sse9I	AATT	2 cut(s)	317, 370
SsiI	CCGC	1 cut(s)	355
SstI	GAGCTC	1 cut(s)	264
TaqI	TCGA	3 cut(s)	27, 166, 323
TasI	AATT	2 cut(s)	317, 370
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.