Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029157.1

Orthogroup ID

OG0000833

Physical Location & Seq

Genomic Coordinates Reverse (-)

2396 .. 3103

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029157.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ctgccttggactatcctttccaaccatgctggacccgcaatttggaaacaacctctcgagttactttcctcccaagacaaagaagcagtcaaacccggagatgataaatcaagcaatagaccaccgttgatagaggagatcaccatcccatcagtctccaaactctcaaaatcaggtgtcaagttcttgcccgcaagtactatttcaaccatctctttggatgctaagacttgctcattttacctcccgagtacaagcttagatgggaacatagaggtgatcctgagaaacttggtggccaacgaggcatcaactgcatcggggccattggtttttactcgctacaccaagttgatgaacggaatcatagacaccgaggaggacgctaagttgcttagagagaagggtatcatcttgaaccatttgaagagtgatgaagaagtggcaaagctgttcaatggcatgagcaggtccattagattgaccaaagtgcccttcttggataaggcaatcaaagatgccaacaagtattaccatggtagatggaaggtgaagatgaagaagtctttgaaaacttatgtgttaggttcttggcaatttctggcttcgatcgctaccatttttctcctgctcttgatgacattggaagcattttgctcagtctatagctgcagtcgcatgtttcatatcaacaccactaataaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

235

Amino Acids

26.23

Weight (kDa)

9.4

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02645
fragaria_vesca	FvH4_6g29070
malus_domestica	MD17G1218100.v1.1 MD17G1218200.v1.1 MD17G1218300.v1.1
prunus_persica	Prupe.3G093800_v2.0.a1
pyrus_communis	pycom17g22240 pycom17g22260 pycom17g22300
rosa_chinensis	RchiOBHm_Chr2g0134191 RchiOBHm_Chr2g0134241 RchiOBHm_Chr5g0045721 RchiOBHm_Chr5g0045921 RchiOBHm_Chr5g0046291 RchiOBHm_Chr5g0046301 RchiOBHm_Chr5g0046381 RchiOBHm_Chr5g0046471 RchiOBHm_Chr6g0251731 RchiOBHm_Chr6g0251751
rosa_laevigata	RLG00000015433 RLG00000015434 RLG00000015437 RLG00000019380 RLG00000019381 RLG00000033594 RLG00000034373
rosa_multiflora	Rmu_co8204744.1_g000001 Rmu_sc0000418.1_g000019 Rmu_sc0001035.1_g000018 Rmu_sc0001382.1_g000037 Rmu_sc0001782.1_g000010 Rmu_sc0002879.1_g000003 Rmu_sc0029157.1_g000002 Rmu_ssc0000213.1_g000105 Rmu_ssc0000213.1_g000108
rosa_roxburghii	Rroxscaffold_1G00035530 Rroxscaffold_2G00110460 Rroxscaffold_2G00110480 Rroxscaffold_7G00216440 Rroxscaffold_7G00216460
rosa_rugosa	Rorug02G0314800 Rorug02G0315100 Rorug05G0503500 Rorug05G0503700
rosa_samantha	Rh2BG374000 Rh2BG374200 Rh2CG351600 Rh2CG351800 Rh2DG390800 Rh2DG391300 Rh5AG308800 Rh5BG313900 Rh5BG314000 Rh5BG315900 Rh5BG317000 Rh5BG317800 Rh6AG014100 Rh6AG014300 Rh6BG012700 Rh6BG012900 Rh6DG010900
rosa_wichuraiana	Rw0G003610 Rw0G021180 Rw2G029970 Rw2G030010 Rw5G028730 Rw5G028780 Rw6G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AciI	CCGC	2 cut(s)	36, 192
AclWI	GGATC	1 cut(s)	274
AcoI	YGGCCR	1 cut(s)	297
AfaI	GTAC	2 cut(s)	199, 253
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	5 cut(s)	207, 418, 427, 457, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	3 cut(s)	258, 451, 669
AluI	AGCT	3 cut(s)	258, 451, 669
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	274
Ama87I	CYCGRG	2 cut(s)	56, 247
AoxI	GGCC	2 cut(s)	297, 323
ApeKI	GCWGC	1 cut(s)	669
ArsI	GACNNNNNNTTYG	4 cut(s)	24, 56, 72, 104
AspS9I	GGNCC	3 cut(s)	32, 323, 471
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	3 cut(s)	133, 289, 562
AvaI	CYCGRG	2 cut(s)	56, 247
AvaII	GGWCC	2 cut(s)	32, 471
BaeGI	GKGCMC	1 cut(s)	495
BalI	TGGCCA	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	5 cut(s)	152, 157, 218, 257, 537
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	160
BfmI	CTRYAG	2 cut(s)	664, 670
BfuAI	ACCTGC	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	671
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	2 cut(s)	32, 471
BmeT110I	CYCGRG	2 cut(s)	56, 247
BmgT120I	GGNCC	3 cut(s)	32, 323, 471
BmiI	GGNNCC	2 cut(s)	34, 324
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	4 cut(s)	211, 317, 326, 508
BpuMI	CCSGG	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	5, 375, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	143
BseDI	CCNNGG	3 cut(s)	5, 375, 535
BseGI	GGATG	2 cut(s)	144, 226
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	275, 672
BseRI	GAGGAG	2 cut(s)	149, 392
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	656
Bsh1285I	CGRYCG	1 cut(s)	612
BshFI	GGCC	2 cut(s)	299, 325
BsiEI	CGRYCG	1 cut(s)	612
BsiHKCI	CYCGRG	2 cut(s)	56, 247
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	299, 325
BsoBI	CYCGRG	2 cut(s)	56, 247
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	138, 279, 609
Bsp19I	CCATGG	1 cut(s)	535
BspACI	CCGC	2 cut(s)	36, 192
BspANI	GGCC	2 cut(s)	299, 325
BspCNI	CTCAG	2 cut(s)	276, 671
BspLI	GGNNCC	2 cut(s)	34, 324
BspMAI	CTGCAG	1 cut(s)	674
BspMI	ACCTGC	1 cut(s)	459
BspPI	GGATC	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	5, 375, 535
BssMI	GATC	3 cut(s)	138, 279, 609
BssT1I	CCWWGG	2 cut(s)	5, 535
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	6 cut(s)	225, 259, 284, 387, 395, 658
BstDSI	CCRYGG	1 cut(s)	535
BstF5I	GGATG	2 cut(s)	144, 226
BstKTI	GATC	3 cut(s)	141, 282, 612
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	138, 279, 609
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 305, 314, 611, 675
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	2 cut(s)	664, 670
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	656
BstXI	CCANNNNNNTGG	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	299, 325
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	144, 226
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	32, 323, 471
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	198, 252
CviAII	CATG	4 cut(s)	26, 463, 536, 679
CviJI	RGCY	6 cut(s)	258, 299, 325, 451, 605, 669
CviKI_1	RGCY	6 cut(s)	258, 299, 325, 451, 605, 669
CviQI	GTAC	2 cut(s)	198, 252
DdeI	CTNAG	6 cut(s)	225, 259, 284, 387, 395, 658
DpnI	GATC	3 cut(s)	140, 281, 611
DpnII	GATC	3 cut(s)	138, 279, 609
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco130I	CCWWGG	2 cut(s)	5, 535
Eco47I	GGWCC	2 cut(s)	32, 471
Eco88I	CYCGRG	2 cut(s)	56, 247
EcoT14I	CCWWGG	2 cut(s)	5, 535
ErhI	CCWWGG	2 cut(s)	5, 535
FaeI	CATG	4 cut(s)	29, 466, 539, 682
FaiI	YATR	9 cut(s)	27, 272, 368, 464, 537, 579, 666, 680, 687
FatI	CATG	4 cut(s)	25, 462, 535, 678
FauI	CCCGC	2 cut(s)	43, 199
Fnu4HI	GCNGC	1 cut(s)	670
FokI	GGATG	2 cut(s)	131, 233
Fsp4HI	GCNGC	1 cut(s)	670
GluI	GCNGC	1 cut(s)	670
HaeIII	GGCC	2 cut(s)	299, 325
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	4 cut(s)	29, 466, 539, 682
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	3 cut(s)	133, 289, 562
Hpy188III	TCNNGA	5 cut(s)	56, 247, 283, 415, 634
HpyAV	CCTTC	3 cut(s)	397, 505, 541
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	317, 672
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 305, 314, 611, 675
HpyF3I	CTNAG	6 cut(s)	225, 259, 284, 387, 395, 658
Hsp92II	CATG	4 cut(s)	29, 466, 539, 682
Kzo9I	GATC	3 cut(s)	138, 279, 609
LpnPI	CCDG	7 cut(s)	15, 109, 159, 296, 454, 587, 641
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	4 cut(s)	211, 317, 326, 508
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	3 cut(s)	140, 281, 611
MboI	GATC	3 cut(s)	138, 279, 609
MboII	GAAGA	4 cut(s)	439, 449, 565, 571
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	39, 596
MluNI	TGGCCA	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	8 cut(s)	63, 79, 127, 254, 268, 298, 370, 373
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	5 cut(s)	35, 305, 314, 611, 675
NciI	CCSGG	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	535
NdeII	GATC	3 cut(s)	138, 279, 609
NlaIII	CATG	4 cut(s)	29, 466, 539, 682
NlaIV	GGNNCC	2 cut(s)	34, 324
NspI	RCATGY	1 cut(s)	682
PaeR7I	CTCGAG	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	671
Ple19I	CGATCG	1 cut(s)	612
PspN4I	GGNNCC	2 cut(s)	34, 324
PspPI	GGNCC	3 cut(s)	32, 323, 471
PstI	CTGCAG	1 cut(s)	674
PvuI	CGATCG	1 cut(s)	612
RsaI	GTAC	2 cut(s)	199, 253
RsaNI	GTAC	2 cut(s)	198, 252
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	1 cut(s)	670
Sau3AI	GATC	3 cut(s)	138, 279, 609
Sau96I	GGNCC	3 cut(s)	32, 323, 471
ScaI	AGTACT	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	4 cut(s)	211, 317, 326, 508
SfcI	CTRYAG	2 cut(s)	664, 670
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	32, 471
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	39, 596
SsiI	CCGC	2 cut(s)	36, 192
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	2 cut(s)	5, 535
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	57, 608
TasI	AATT	2 cut(s)	39, 596
TatI	WGTACW	2 cut(s)	197, 251
TfiI	GAWTC	1 cut(s)	363
TseI	GCWGC	1 cut(s)	669
TspDTI	ATGAA	4 cut(s)	371, 450, 572, 674
TspGWI	ACGGA	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	32, 471
XceI	RCATGY	1 cut(s)	682
XhoI	CTCGAG	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.