RchiOBHm_Chr5g0046471

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000833
Physical Location & Seq
Reverse (-)
42547767 .. 42549081
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32446

Sequence Viewer

Length: 1152 bp
ATGCAGATTTACAAAGTGGCTGCAGCTAAACAAACCCAAAAGCAGCTCCAGCTCAAAACCCTCACATTCCAGCACCCTGTTGACCAATTGACGAGGTCCGAGCTGAGGATTCGTGCTTGTTACCACAAGTACTTGGAGGTTAGTAGTGAGACTTTGGGGTGGATGATGGCCATTGATGCTTCGTTTTTCCTCGAAATCCTCCAAGTCTATGAGGTCCAAGAAGGCCCAAGAGTTTCTTCAAGGATGGCGCATTTGGTTGACCATGCAGGAAGGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAACCAAATCCCACGATTTGTTTTGAAAAAAGTGTTGAAGTTTAAGCTCCCAGCGTTGGAATGTGCCAAAGATAAGCTTCTTTCCATGTTTATGGGATTGTGCAAAGAGCTCTCCCCATTCAAGATGAATGACGAAGACATGCCAAATATGGGAGTGAATATCCAATTCTCGAGTTGTTTTCACTTGCTGGACTTCTTGTACCGCTTGATCACCCCCAAGTTAGTAGCCGAGCCATCGGAAATCACAAAAGCCGTGGGATATGAGGCCGCACAACAACAGAAGGGAAAATCATCAGTTAATTCGAATTTTGTCAAACAATTTCTGAAGCAGATCACCATCCCATCAGTCTCCGATCTCTCAAAATCTGGTGTCAAGTTCTTGGCCGGCGGAATTAGAATTTCAGACATCTCTTTCAATGCTGAAACTAGCTCATTTACCCTCCCGATTACTAGCTTAGATGGGAACACAGGGGTGATCCTGAGAAACTTGGTGGCCTATGAAGCATCAAGTGTATCGGGGCCATTGGTTTTCACTCGCTACACCGAGTTGATGAACGGGATCATAGACACCGAGGAGGATGTCAAGTTGCTTAGAGAGAAGCGTATCATTGTGAACCATTTGAAGAGTGATGAAGAAGTGGCAAATCTGTCCAATGGCATGAGCAAGTCCATTAGATTGACCAAAGTGCCCTCCTTGGATAAGGTAATCGCAGATGCCAACGAGTATTACAATGGTAGATGGAAAGTGAAGATGAGGAAGTTTTTGAACACTTTAATGTGTATGATGTTGTTTGTATTAATCTTTATGACTTGTACTCCTAATTTAAATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

383

Amino Acids

43.39

Weight (kDa)

9.18

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 364 9e-77 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 520, 585, 705
AclWI GGATC 2 cut(s) 787, 884
AcoI YGGCCR 2 cut(s) 168, 699
AcsI RAATTY 2 cut(s) 622, 714
AcuI CTGAAG 1 cut(s) 662
AfaI GTAC 3 cut(s) 131, 518, 1132
AfiI CCNNNNNNNGG 3 cut(s) 105, 373, 467
AgsI TTSAA 7 cut(s) 240, 343, 355, 439, 733, 940, 1084
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
AleI CACNNNNGTG 1 cut(s) 788
AluBI AGCT 9 cut(s) 26, 46, 52, 103, 364, 394, 427, 747, 771
AluI AGCT 9 cut(s) 26, 46, 52, 103, 364, 394, 427, 747, 771
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 2 cut(s) 143, 670
AlwI GGATC 2 cut(s) 787, 884
Ama87I CYCGRG 1 cut(s) 487
AoxI GGCC 6 cut(s) 168, 223, 582, 699, 810, 836
ApeKI GCWGC 3 cut(s) 20, 23, 43
ApoI RAATTY 2 cut(s) 622, 714
AseI ATTAAT 1 cut(s) 1115
AspLEI GCGC 2 cut(s) 250, 283
AspS9I GGNCC 4 cut(s) 96, 214, 224, 836
AsuHPI GGTGA 4 cut(s) 319, 520, 643, 802
AsuII TTCGAA 1 cut(s) 620
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 2 cut(s) 96, 214
AxyI CCTNAGG 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 1008
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 429
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 7, 35, 55
BccI CCATC 7 cut(s) 160, 238, 559, 662, 667, 770, 1050
BceAI ACGGC 1 cut(s) 554
BclI TGATCA 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 143, 670
BfaI CTAG 2 cut(s) 744, 768
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 4 cut(s) 21, 24, 44, 585
BlsI GCNGC 4 cut(s) 22, 25, 45, 586
BmcAI AGTACT 1 cut(s) 131
Bme18I GGWCC 2 cut(s) 96, 214
BmeT110I CYCGRG 1 cut(s) 487
BmgT120I GGNCC 4 cut(s) 96, 214, 224, 836
BmiI GGNNCC 1 cut(s) 837
BmsI GCATC 5 cut(s) 166, 292, 300, 830, 1021
BpiI GAAGAC 1 cut(s) 459
BpmI CTGGAG 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 104
Bpu14I TTCGAA 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 335
BsaBI GATNNNNATC 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 570, 888, 1011
BsaXI ACNNNNNCTCC 2 cut(s) 1117, 1147
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 373, 467
Bse118I RCCGGY 1 cut(s) 701
Bse21I CCTNAGG 1 cut(s) 296
Bse8I GATNNNNATC 1 cut(s) 653
BseDI CCNNGG 3 cut(s) 570, 888, 1011
BseGI GGATG 4 cut(s) 168, 249, 654, 901
BseJI GATNNNNATC 1 cut(s) 653
BseLI CCNNNNNNNGG 3 cut(s) 105, 373, 467
BseMII CTCAG 2 cut(s) 95, 788
BseRI GAGGAG 1 cut(s) 905
BseSI GKGCMC 1 cut(s) 1008
BseXI GCAGC 3 cut(s) 7, 35, 55
BseYI CCCAGC 1 cut(s) 367
BshFI GGCC 6 cut(s) 170, 225, 584, 701, 812, 838
BsiHKAI GWGCWC 1 cut(s) 429
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 1 cut(s) 702
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 3 cut(s) 105, 373, 467
BsmAI GTCTC 2 cut(s) 143, 670
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 6 cut(s) 170, 225, 584, 701, 812, 838
BsoBI CYCGRG 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 620
Bsp1286I GDGCHC 2 cut(s) 429, 1008
Bsp143I GATC 5 cut(s) 525, 648, 670, 792, 876
BspACI CCGC 3 cut(s) 520, 585, 705
BspANI GGCC 6 cut(s) 170, 225, 584, 701, 812, 838
BspCNI CTCAG 2 cut(s) 96, 789
BspLI GGNNCC 1 cut(s) 837
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 2 cut(s) 787, 884
BspT104I TTCGAA 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 701
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 3 cut(s) 570, 888, 1011
BssMI GATC 5 cut(s) 525, 648, 670, 792, 876
BssT1I CCWWGG 1 cut(s) 1011
Bst6I CTCTTC 1 cut(s) 935
BstBI TTCGAA 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 5 cut(s) 104, 296, 772, 797, 908
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 4 cut(s) 168, 249, 654, 901
BstHHI GCGC 2 cut(s) 250, 283
BstKTI GATC 5 cut(s) 528, 651, 673, 795, 879
BstMAI GTCTC 2 cut(s) 143, 670
BstMBI GATC 5 cut(s) 525, 648, 670, 792, 876
BstMWI GCNNNNNNNGC 4 cut(s) 49, 176, 287, 818
BstNSI RCATGY 1 cut(s) 460
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 1008
BstV1I GCAGC 3 cut(s) 7, 35, 55
BstV2I GAAGAC 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 409
Bsu36I CCTNAGG 1 cut(s) 296
BsuRI GGCC 6 cut(s) 170, 225, 584, 701, 812, 838
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 4 cut(s) 168, 249, 654, 901
Cac8I GCNNGC 1 cut(s) 703
CfoI GCGC 2 cut(s) 250, 283
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 4 cut(s) 96, 214, 224, 836
Csp6I GTAC 3 cut(s) 130, 517, 1131
CspCI CAANNNNNGTGG 2 cut(s) 552, 587
CviAII CATG 5 cut(s) 263, 287, 403, 457, 976
CviQI GTAC 3 cut(s) 130, 517, 1131
DdeI CTNAG 5 cut(s) 104, 296, 772, 797, 908
DpnI GATC 5 cut(s) 527, 650, 672, 794, 878
DpnII GATC 5 cut(s) 525, 648, 670, 792, 876
DraI TTTAAA 1 cut(s) 1143
EaeI YGGCCR 2 cut(s) 168, 699
Eam1104I CTCTTC 1 cut(s) 935
EarI CTCTTC 1 cut(s) 935
EciI GGCGGA 1 cut(s) 720
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 1011
Eco24I GRGCYC 1 cut(s) 429
Eco47I GGWCC 2 cut(s) 96, 214
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 662
Eco81I CCTNAGG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 1011
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 1011
FaeI CATG 5 cut(s) 266, 290, 406, 460, 979
FalI AAGNNNNNCTT 4 cut(s) 220, 252, 378, 410
FaqI GGGAC 1 cut(s) 314
FatI CATG 5 cut(s) 262, 286, 402, 456, 975
FbaI TGATCA 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 21, 24, 44, 585
FokI GGATG 4 cut(s) 175, 256, 641, 908
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 4 cut(s) 21, 24, 44, 585
FspBI CTAG 2 cut(s) 744, 768
GlaI GCGC 2 cut(s) 249, 282
GluI GCNGC 4 cut(s) 21, 24, 44, 585
GsaI CCCAGC 1 cut(s) 371
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 6 cut(s) 170, 225, 584, 701, 812, 838
HapII CCGG 1 cut(s) 702
HhaI GCGC 2 cut(s) 250, 283
Hin1II CATG 5 cut(s) 266, 290, 406, 460, 979
Hin6I GCGC 2 cut(s) 248, 281
HinP1I GCGC 2 cut(s) 248, 281
HincII GTYRAC 2 cut(s) 82, 259
HindII GTYRAC 2 cut(s) 82, 259
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 702
HphI GGTGA 4 cut(s) 319, 520, 643, 802
Hpy166II GTNNAC 3 cut(s) 82, 259, 931
Hpy188I TCNGA 5 cut(s) 100, 556, 642, 670, 721
Hpy188III TCNNGA 4 cut(s) 439, 487, 760, 796
Hpy8I GTNNAC 3 cut(s) 82, 259, 931
HpyAV CCTTC 3 cut(s) 215, 264, 592
HpyCH4V TGCA 5 cut(s) 4, 23, 266, 290, 420
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 176, 287, 818
HpyF3I CTNAG 5 cut(s) 104, 296, 772, 797, 908
Hsp92II CATG 5 cut(s) 266, 290, 406, 460, 979
HspAI GCGC 2 cut(s) 248, 281
KroI GCCGGC 1 cut(s) 701
KroNI GCCGGC 1 cut(s) 703
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 5 cut(s) 525, 648, 670, 792, 876
LmnI GCTCC 2 cut(s) 51, 369
Lsp1109I GCAGC 3 cut(s) 7, 35, 55
LweI GCATC 5 cut(s) 166, 292, 300, 830, 1021
MaeI CTAG 2 cut(s) 744, 768
MaeIII GTNAC 1 cut(s) 119
MalI GATC 5 cut(s) 527, 650, 672, 794, 878
MboI GATC 5 cut(s) 525, 648, 670, 792, 876
MboII GAAGA 5 cut(s) 228, 464, 952, 962, 1078
MfeI CAATTG 1 cut(s) 86
MhlI GDGCHC 2 cut(s) 429, 1008
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 8 cut(s) 86, 482, 616, 622, 635, 708, 714, 1138
MluNI TGGCCA 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 354
Mox20I TGGCCA 1 cut(s) 170
MroNI GCCGGC 1 cut(s) 701
MscI TGGCCA 1 cut(s) 170
MseI TTAA 5 cut(s) 360, 615, 1091, 1115, 1142
MslI CAYNNNNRTG 3 cut(s) 407, 788, 1091
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 1 cut(s) 702
MunI CAATTG 1 cut(s) 86
MwoI GCNNNNNNNGC 4 cut(s) 49, 176, 287, 818
NaeI GCCGGC 1 cut(s) 703
NdeII GATC 5 cut(s) 525, 648, 670, 792, 876
NgoMIV GCCGGC 1 cut(s) 701
NlaIII CATG 5 cut(s) 266, 290, 406, 460, 979
NlaIV GGNNCC 1 cut(s) 837
NmeAIII GCCGAG 1 cut(s) 571
NspI RCATGY 1 cut(s) 460
NspV TTCGAA 1 cut(s) 620
OliI CACNNNNGTG 1 cut(s) 788
PaeR7I CTCGAG 1 cut(s) 487
PdiI GCCGGC 1 cut(s) 703
PfeI GAWTC 1 cut(s) 109
PflFI GACNNNGTC 1 cut(s) 94
PkrI GCNGC 4 cut(s) 22, 25, 45, 586
PshBI ATTAAT 1 cut(s) 1115
Psp124BI GAGCTC 1 cut(s) 429
PspFI CCCAGC 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 837
PspPI GGNCC 4 cut(s) 96, 214, 224, 836
PstI CTGCAG 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 94
RsaI GTAC 3 cut(s) 131, 518, 1132
RsaNI GTAC 3 cut(s) 130, 517, 1131
RseI CAYNNNNRTG 3 cut(s) 407, 788, 1091
SacI GAGCTC 1 cut(s) 429
SaqAI TTAA 5 cut(s) 360, 615, 1091, 1115, 1142
SatI GCNGC 4 cut(s) 21, 24, 44, 585
Sau3AI GATC 5 cut(s) 525, 648, 670, 792, 876
Sau96I GGNCC 4 cut(s) 96, 214, 224, 836
ScaI AGTACT 1 cut(s) 131
SduI GDGCHC 2 cut(s) 429, 1008
SfaNI GCATC 5 cut(s) 166, 292, 300, 830, 1021
SfcI CTRYAG 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 487
SfuI TTCGAA 1 cut(s) 620
SinI GGWCC 2 cut(s) 96, 214
SlaI CTCGAG 1 cut(s) 487
SmiI ATTTAAAT 1 cut(s) 1143
SmiMI CAYNNNNRTG 3 cut(s) 407, 788, 1091
SmlI CTYRAG 2 cut(s) 314, 487
SmoI CTYRAG 2 cut(s) 314, 487
Sse9I AATT 8 cut(s) 86, 482, 616, 622, 635, 708, 714, 1138
SsiI CCGC 3 cut(s) 520, 585, 705
SspMI CTAG 2 cut(s) 744, 768
SstI GAGCTC 1 cut(s) 429
StyI CCWWGG 1 cut(s) 1011
SwaI ATTTAAAT 1 cut(s) 1143
TaqI TCGA 3 cut(s) 192, 488, 620
TasI AATT 8 cut(s) 86, 482, 616, 622, 635, 708, 714, 1138
TatI WGTACW 2 cut(s) 129, 1130
TauI GCSGC 1 cut(s) 587
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 5 cut(s) 360, 615, 1091, 1115, 1142
Tru9I TTAA 5 cut(s) 360, 615, 1091, 1115, 1142
TseI GCWGC 3 cut(s) 20, 23, 43
TspDTI ATGAA 4 cut(s) 458, 831, 884, 963
Tth111I GACNNNGTC 1 cut(s) 94
VpaK11BI GGWCC 2 cut(s) 96, 214
VspI ATTAAT 1 cut(s) 1115
XapI RAATTY 2 cut(s) 622, 714
XceI RCATGY 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 487
XspI CTAG 2 cut(s) 744, 768
ZrmI AGTACT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.