Rh6DG010900

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000833
Physical Location & Seq
Forward (+)
1087322 .. 1088506
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG010900.1

Sequence Viewer

Length: 1185 bp
ATGGCTCATTTGTTTGACTATGCAAGAAGGAAGTCAGCGCATCATGCAATCCTTAGGGACTTGGTGATGCTTGAGAATCAAATCCCACTACTTGTTTTGAGAGAAGTGTTGGCATTTCAGTTACCAACGTTGGAATGCGCCGACGATATGCTCCTTTCCATGTTTATGGGACTATGCAAAGTGCTTTCCCCATTCAAGATGAATGATGAAGACATGCCAAAGATCCACGTGTCGAGCTGTTGTCACTTGCTAGACTTTTTGTACCACATGATCACCCCCAAATTAGAAGCTAGACCGTCCGAAATTCCGGAAGCCCAGGATGGTTCGGCCACACCACACGAGGGAAAATCTTCAGATAACTCGAATTTCGTCAAACAATTTCTGGAGGAGGTATGGAAGCTGCTATCGAATTGGAACAAAGGCCCGATACGTCTTCTGAAAAAAATTCTAATATCTCGACCTGTAAAAGTGATAAGAAAAGCTTGGACTATCCTCTCCAACCATCCTGGACTCGCAATTTTGAAACAACCTCTCAAGTTATTTTCCTCACAAGACAAAGAAGCAGTCAAATCCGAAGATGATAATTCGAGCAATAGACCGCCGTTGATAGAGGAGATCACCATCCCATCTGTCTCCGAACTCTCAAAATCAGGTGTCAAGTTCTTGCCCGCAAGGAGTATTTCAACCATCTCTTTCGATGCTAAAACTTGCTCATTTTACCTCCCTAGTACAAGCTTAGATGGGAACACAGAGGTGATCCTGAGAAACTTGGTGGCCTACGAGGCATCAACTGCATTGGGGCCATTGGTTTTTACTCGCTACACCGAGTTGATGAATGGGATCATAGACACCAAGGAGGATGCCAAATTGCTTAGAGAGAAAGGTATCATCTTGAACCATTTGAAGAGTGACGAAGAAGTGGCAAAGCTGTTCAATGGCATGAGCAAGTCCATTAGATTGACCAAAGTGCCCTTCTTGGACAAGGCAATCAAAGATGTCAACAAGTATTACAATGGTAGATGGAAGGTGAAGATGAGGAAGTCTCTGAAAACTTATGTGTTTGGTTCTTGGCAATTTCTGGCTTCGCTCGCTACCATTTTGCCCCTGCTCTTGATGACATTGGAAGCATTTTGCTCAGTCTATAGCTGCAGTCGCATGTTTCATATCAACACCACTAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

394

Amino Acids

44.68

Weight (kDa)

9.11

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 12 - 371 1.6e-68 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 2 cut(s) 599, 669
AclI AACGTT 1 cut(s) 128
AclWI GGATC 3 cut(s) 217, 751, 848
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 3 cut(s) 303, 364, 444
AcuI CTGAAG 1 cut(s) 336
AcvI CACGTG 1 cut(s) 229
AfaI GTAC 2 cut(s) 263, 730
AfiI CCNNNNNNNGG 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 6 cut(s) 196, 523, 684, 895, 904, 934
AjnI CCWGG 2 cut(s) 315, 505
AjuI GAANNNNNNNTTGG 2 cut(s) 956, 988
AleI CACNNNNGTG 1 cut(s) 752
AluBI AGCT 7 cut(s) 237, 290, 400, 482, 735, 928, 1146
AluI AGCT 7 cut(s) 237, 290, 400, 482, 735, 928, 1146
Alw26I GTCTC 2 cut(s) 637, 1047
AlwI GGATC 3 cut(s) 217, 751, 848
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 4 cut(s) 327, 421, 774, 800
ApeKI GCWGC 2 cut(s) 400, 1146
ApoI RAATTY 3 cut(s) 303, 364, 444
ArsI GACNNNNNNTTYG 2 cut(s) 549, 581
Asp700I GAANNNNTTC 1 cut(s) 349
AspLEI GCGC 2 cut(s) 40, 140
AspS9I GGNCC 2 cut(s) 422, 800
AsuHPI GGTGA 5 cut(s) 76, 265, 610, 766, 1039
AxyI CCTNAGG 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 972
BauI CACGAG 1 cut(s) 338
BbrPI CACGTG 1 cut(s) 229
BbsI GAAGAC 2 cut(s) 216, 425
BbvI GCAGC 2 cut(s) 387, 1133
BccI CCATC 7 cut(s) 314, 510, 629, 634, 695, 734, 1014
BceAI ACGGC 1 cut(s) 586
BciT130I CCWGG 2 cut(s) 317, 507
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 637, 1047
BfaI CTAG 3 cut(s) 251, 291, 726
BfmI CTRYAG 2 cut(s) 1141, 1147
BglI GCCNNNNNGGC 1 cut(s) 782
BisI GCNGC 2 cut(s) 401, 1147
BlsI GCNGC 2 cut(s) 402, 1148
Bme1390I CCNGG 2 cut(s) 317, 507
BmgT120I GGNCC 2 cut(s) 422, 800
BmiI GGNNCC 1 cut(s) 801
BmrFI CCNGG 2 cut(s) 317, 507
BmsI GCATC 5 cut(s) 49, 57, 688, 794, 850
BpiI GAAGAC 2 cut(s) 216, 425
BplI GAGNNNNNCTC 2 cut(s) 1027, 1059
BpmI CTGGAG 1 cut(s) 404
BpuEI CTTGAG 2 cut(s) 92, 518
BsaAI YACGTR 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 620
BsaJI CCNNGG 2 cut(s) 315, 852
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 620
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 2 cut(s) 317, 507
BseDI CCNNGG 2 cut(s) 315, 852
BseGI GGATG 4 cut(s) 325, 502, 621, 865
BseJI GATNNNNATC 1 cut(s) 620
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 2 cut(s) 752, 1149
BseRI GAGGAG 2 cut(s) 401, 626
BseSI GKGCMC 1 cut(s) 972
BseXI GCAGC 2 cut(s) 387, 1133
BshFI GGCC 4 cut(s) 329, 423, 776, 802
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 2 cut(s) 71, 183
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 637, 1047
BsmFI GGGAC 2 cut(s) 71, 183
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 4 cut(s) 329, 423, 776, 802
Bsp1286I GDGCHC 1 cut(s) 972
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 5 cut(s) 222, 270, 615, 756, 840
BspACI CCGC 2 cut(s) 599, 669
BspANI GGCC 4 cut(s) 329, 423, 776, 802
BspCNI CTCAG 2 cut(s) 753, 1148
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 801
BspMAI CTGCAG 1 cut(s) 1151
BspPI GGATC 3 cut(s) 217, 751, 848
BssECI CCNNGG 2 cut(s) 315, 852
BssMI GATC 5 cut(s) 222, 270, 615, 756, 840
BssSI CACGAG 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 852
Bst2BI CACGAG 1 cut(s) 338
Bst2UI CCWGG 2 cut(s) 317, 507
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 899
BstAPI GCANNNNNTGC 1 cut(s) 791
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 669, 1089
BstDEI CTNAG 5 cut(s) 53, 736, 761, 872, 1135
BstF5I GGATG 4 cut(s) 325, 502, 621, 865
BstHHI GCGC 2 cut(s) 40, 140
BstKTI GATC 5 cut(s) 225, 273, 618, 759, 843
BstMAI GTCTC 2 cut(s) 637, 1047
BstMBI GATC 5 cut(s) 222, 270, 615, 756, 840
BstMWI GCNNNNNNNGC 5 cut(s) 44, 782, 791, 1088, 1152
BstNI CCWGG 2 cut(s) 317, 507
BstNSI RCATGY 2 cut(s) 217, 1159
BstSCI CCNGG 2 cut(s) 315, 505
BstSFI CTRYAG 2 cut(s) 1141, 1147
BstSLI GKGCMC 1 cut(s) 972
BstV1I GCAGC 2 cut(s) 387, 1133
BstV2I GAAGAC 2 cut(s) 216, 425
BstX2I RGATCY 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 1 cut(s) 222
Bsu36I CCTNAGG 1 cut(s) 53
BsuRI GGCC 4 cut(s) 329, 423, 776, 802
BtsCI GGATG 4 cut(s) 325, 502, 621, 865
Cac8I GCNNGC 2 cut(s) 669, 1089
CfoI GCGC 2 cut(s) 40, 140
Cfr13I GGNCC 2 cut(s) 422, 800
Csp6I GTAC 2 cut(s) 262, 729
CviAII CATG 6 cut(s) 44, 160, 214, 268, 940, 1156
CviQI GTAC 2 cut(s) 262, 729
DdeI CTNAG 5 cut(s) 53, 736, 761, 872, 1135
DpnI GATC 5 cut(s) 224, 272, 617, 758, 842
DpnII GATC 5 cut(s) 222, 270, 615, 756, 840
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
Eco130I CCWWGG 1 cut(s) 852
Eco57I CTGAAG 1 cut(s) 336
Eco72I CACGTG 1 cut(s) 229
Eco81I CCTNAGG 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 315, 505
EcoT14I CCWWGG 1 cut(s) 852
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 6 cut(s) 47, 163, 217, 271, 943, 1159
FalI AAGNNNNNCTT 2 cut(s) 466, 498
FaqI GGGAC 2 cut(s) 71, 183
FatI CATG 6 cut(s) 43, 159, 213, 267, 939, 1155
FauI CCCGC 1 cut(s) 676
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 401, 1147
FokI GGATG 4 cut(s) 332, 489, 608, 872
Fsp4HI GCNGC 2 cut(s) 401, 1147
FspBI CTAG 3 cut(s) 251, 291, 726
GlaI GCGC 2 cut(s) 39, 139
GluI GCNGC 2 cut(s) 401, 1147
GsuI CTGGAG 1 cut(s) 404
HaeIII GGCC 4 cut(s) 329, 423, 776, 802
HapII CCGG 1 cut(s) 308
HhaI GCGC 2 cut(s) 40, 140
Hin1II CATG 6 cut(s) 47, 163, 217, 271, 943, 1159
Hin6I GCGC 2 cut(s) 38, 138
HinP1I GCGC 2 cut(s) 38, 138
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HindIII AAGCTT 2 cut(s) 480, 733
HinfI GANTC 2 cut(s) 76, 510
HpaII CCGG 1 cut(s) 308
HphI GGTGA 5 cut(s) 76, 265, 610, 766, 1039
Hpy166II GTNNAC 1 cut(s) 1000
Hpy188I TCNGA 6 cut(s) 301, 355, 438, 574, 637, 1047
Hpy188III TCNNGA 7 cut(s) 196, 308, 383, 456, 760, 892, 1111
Hpy8I GTNNAC 1 cut(s) 1000
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 21, 982, 1018
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 3 cut(s) 128, 228, 430
HpyCH4V TGCA 5 cut(s) 23, 47, 177, 794, 1149
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 782, 791, 1088, 1152
HpyF3I CTNAG 5 cut(s) 53, 736, 761, 872, 1135
HpySE526I ACGT 3 cut(s) 128, 228, 430
Hsp92II CATG 6 cut(s) 47, 163, 217, 271, 943, 1159
HspAI GCGC 2 cut(s) 38, 138
Kpn2I TCCGGA 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 5 cut(s) 222, 270, 615, 756, 840
LmnI GCTCC 1 cut(s) 156
Lsp1109I GCAGC 2 cut(s) 387, 1133
LweI GCATC 5 cut(s) 49, 57, 688, 794, 850
MaeI CTAG 3 cut(s) 251, 291, 726
MaeII ACGT 3 cut(s) 128, 228, 430
MaeIII GTNAC 3 cut(s) 120, 242, 908
MalI GATC 5 cut(s) 224, 272, 617, 758, 842
MboI GATC 5 cut(s) 222, 270, 615, 756, 840
MboII GAAGA 7 cut(s) 221, 342, 425, 587, 916, 926, 1042
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 972
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 2 cut(s) 111, 522
MroI TCCGGA 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 349
MslI CAYNNNNRTG 2 cut(s) 164, 752
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 2 cut(s) 317, 507
Mva1269I GAATGC 1 cut(s) 140
MvaI CCWGG 2 cut(s) 317, 507
MwoI GCNNNNNNNGC 5 cut(s) 44, 782, 791, 1088, 1152
NdeII GATC 5 cut(s) 222, 270, 615, 756, 840
NlaIII CATG 6 cut(s) 47, 163, 217, 271, 943, 1159
NlaIV GGNNCC 1 cut(s) 801
NmuCI GTSAC 2 cut(s) 242, 908
NspI RCATGY 2 cut(s) 217, 1159
OliI CACNNNNGTG 1 cut(s) 752
PctI GAATGC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 2 cut(s) 402, 1148
PleI GAGTC 1 cut(s) 504
PmaCI CACGTG 1 cut(s) 229
PmlI CACGTG 1 cut(s) 229
PpsI GAGTC 1 cut(s) 504
Ppu21I YACGTR 1 cut(s) 229
Psp1406I AACGTT 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 315, 505
PspCI CACGTG 1 cut(s) 229
PspGI CCWGG 2 cut(s) 315, 505
PspN4I GGNNCC 1 cut(s) 801
PspPI GGNCC 2 cut(s) 422, 800
PstI CTGCAG 1 cut(s) 1151
PsuI RGATCY 1 cut(s) 222
RsaI GTAC 2 cut(s) 263, 730
RsaNI GTAC 2 cut(s) 262, 729
RseI CAYNNNNRTG 2 cut(s) 164, 752
SatI GCNGC 2 cut(s) 401, 1147
Sau3AI GATC 5 cut(s) 222, 270, 615, 756, 840
Sau96I GGNCC 2 cut(s) 422, 800
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 2 cut(s) 317, 507
SduI GDGCHC 1 cut(s) 972
SfaNI GCATC 5 cut(s) 49, 57, 688, 794, 850
SfcI CTRYAG 2 cut(s) 1141, 1147
SmiMI CAYNNNNRTG 2 cut(s) 164, 752
SmlI CTYRAG 2 cut(s) 71, 533
SmoI CTYRAG 2 cut(s) 71, 533
SsiI CCGC 2 cut(s) 599, 669
SspMI CTAG 3 cut(s) 251, 291, 726
StyD4I CCNGG 2 cut(s) 315, 505
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 3 cut(s) 131, 231, 433
TaqI TCGA 6 cut(s) 233, 362, 407, 457, 587, 696
TatI WGTACW 1 cut(s) 728
TfiI GAWTC 1 cut(s) 76
TseFI GTSAC 2 cut(s) 242, 908
TseI GCWGC 2 cut(s) 400, 1146
Tsp45I GTSAC 2 cut(s) 242, 908
TspDTI ATGAA 4 cut(s) 215, 222, 848, 1151
XapI RAATTY 3 cut(s) 303, 364, 444
XceI RCATGY 2 cut(s) 217, 1159
XmnI GAANNNNTTC 1 cut(s) 349
XspI CTAG 3 cut(s) 251, 291, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.